{"data":{"sci_version": "1.0", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:28522612", "kind": "science-record", "revision": 4, "content_hash": "sha256:d9e7738ba3d5d50fc1783be42da91e704ba9d74b51b6ad3d18192c26e62d1588", "created_at": "2026-11-01T15:40:26Z", "updated_at": "2026-11-01T21:20:55Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "GenomeVIP: a cloud platform for genomic variant discovery and interpretation.", "doi": "10.1101/gr.211656.116", "pmid": "28522612", "authors": ["R Jay Mashl", "Adam D Scott", "Kuan-Lin Huang", "Matthew A Wyczalkowski", "Christopher J Yoon", "Beifang Niu", "Erin DeNardo", "Venkata D Yellapantula", "Robert E Handsaker", "Ken Chen", "Daniel C Koboldt", "Kai Ye", "David Fenyö", "Benjamin J Raphael", "Michael C Wendl", "Li Ding"], "journal": "Genome research", "year": 2017, "abstract": "Identifying genomic variants is a fundamental first step toward the understanding of the role of inherited and acquired variation in disease. The accelerating growth in the corpus of sequencing data that underpins such analysis is making the data-download bottleneck more evident, placing substantial burdens on the research community to keep pace. As a result, the search for alternative approaches to the traditional \"download and analyze\" paradigm on local computing resources has led to a rapidly growing demand for cloud-computing solutions for genomics analysis. Here, we introduce the Genome Variant Investigation Platform (GenomeVIP), an open-source framework for performing genomics variant discovery and annotation using cloud- or local high-performance computing infrastructure. GenomeVIP orchestrates the analysis of whole-genome and exome sequence data using a set of robust and popular task-specific tools, including VarScan, GATK, Pindel, BreakDancer, Strelka, and Genome STRiP, through a web interface. GenomeVIP has been used for genomic analysis in large-data projects such as the TCGA PanCanAtlas and in other projects, such as the ICGC Pilots, CPTAC, ICGC-TCGA DREAM Challenges, and the 1000 Genomes SV Project. Here, we demonstrate GenomeVIP's ability to provide high-confidence annotated somatic, germline, and de novo variants of potential biological significance using publicly available data sets.", "claims": [{"id": "claim-method", "statement": "Calculations of true-positive (TP) and false-positive (FP) rates, based on unmasked regions of a known synthetically generated tumor's “truth” set (Ewing et al. 2015), for multiple combinations of parameter sets for the individual, intersected, and combined filtered call sets, is plotted on receiver operating characteristic (ROC) curves (Fig. 4B).", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:28522612", "locator": "sections[30] \"Somatic\" paragraph 2", "quote": "Calculations of true-positive (TP) and false-positive (FP) rates, based on unmasked regions of a known synthetically generated tumor's “truth” set (Ewing et al. 2015), for multiple combinations of parameter sets for the individual, intersected, and combined filtered call sets, is plotted on receiver operating characteristic (ROC) curves (Fig. 4B)."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The GenomeVIP source code and associated scripts are freely available for academic use and are available through GitHub (https://github.com/ding-lab/GenomeVIP/) and as Supplemental Code. Users having Amazon Web Services (AWS) login credentials can launch a GenomeVIP server on the AWS cloud by instantiating server images located in the AWS public repository. GenomeVIP executes computations using a public run-time AWS image providing a nearly complete set of the required genomics software. Software packages on these images carry their own licensing and usage terms. For example, GenomeVIP requires users to provide the location of their own licensed copy of GATK (version 3.5 and higher supported). Installation of GenomeVIP on a local web server allows users to design and execute computations on a local high-performance compute cluster using local data or on Amazon's cloud using data stored at AWS; furthermore, GenomeVIP's internal configuration files may be edited manually to point to local versions of the tools on which GenomeVIP depends. GenomeVIP orchestrates many tools that are all upgraded independently, and these updates will be passed through to GenomeVIP users in the following ways: Tool updates not requiring user interface modification will be distributed in updated runtime images, but those requiring such modification will require an updated server image. Tool versions will accumulate rather than be replaced to preserve backward compatibility. Database updates will be managed similarly, although the user can alternatively specify the location of public or custom annotation VCFs that GenomeVIP can retrieve via FTP/HTTP or from Amazon cloud storage. Documentation, support, and further information is available through GitHub and the GenomeVIP home page at our Turnkey Variant Analysis Project website (http://tvap.genome.wustl.edu/tools/genomevip/).", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:28522612", "locator": "sections[32] \"Software availability\" paragraph 2", "quote": "The GenomeVIP source code and associated scripts are freely available for academic use and are available through GitHub (https://github.com/ding-lab/GenomeVIP/) and as Supplemental Code. Users having Amazon Web Services (AWS) login credentials can launch a GenomeVIP server on the AWS cloud by instantiating server images located in the AWS public repository. GenomeVIP executes computations using a public run-time AWS image providing a nearly complete set of the required genomics software. Software packages on these images carry their own licensing and usage terms. For example, GenomeVIP requires users to provide the location of their own licensed copy of GATK (version 3.5 and higher supported). Installation of GenomeVIP on a local web server allows users to design and execute computations on a local high-performance compute cluster using local data or on Amazon's cloud using data stored at AWS; furthermore, GenomeVIP's internal configuration files may be edited manually to point to local versions of the tools on which GenomeVIP depends. GenomeVIP orchestrates many tools that are all upgraded independently, and these updates will be passed through to GenomeVIP users in the following ways: Tool updates not requiring user interface modification will be distributed in updated runtime images, but those requiring such modification will require an updated server image. Tool versions will accumulate rather than be replaced to preserve backward compatibility. Database updates will be managed similarly, although the user can alternatively specify the location of public or custom annotation VCFs that GenomeVIP can retrieve via FTP/HTTP or from Amazon cloud storage. Documentation, support, and further information is available through GitHub and the GenomeVIP home page at our Turnkey Variant Analysis Project website (http://tvap.genome.wustl.edu/tools/genomevip/)."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "partial", "objective": null, "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:28522612"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "blocked", "blocked_on": "data:accession_absent", "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": [], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": [], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": ["step:obtain_source_data blocked on data:accession_absent"]}, "data": {"state": "partial", "assets": [{"id": "source:pmid:28522612", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1101/gr.211656.116", "sha256": "sha256:68a5280c0cf26a7c16fb54f8cd364429518c8780042b8a6e9e692d55be39705d", "bytes": 46530, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.1101/gr.211656.116", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC5538560", "source": "europe_pmc_fulltext", "coverage": "whole_body", "text_hash_scope": "rendered_section_body"}}, {"id": "asset:table:pmid:28522612:1", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:f936f26709c640aa6d8c948d8eec70b913b8ba918ccb2da8893779ba24496532", "bytes": 215, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[21]/table-wrap[1]#MASHLGR211656TB1", "version": null, "note": "Examples of large-scale projects utilizing GenomeVIP", "structure": {"pmcid": "PMC5538560", "section_index": 21, "section_title": "Use with big data", "row_count": 0, "column_count": 0}, "table": {"label": "Table 1.", "caption": "Examples of large-scale projects utilizing GenomeVIP", "rows": [], "row_count": 0, "column_count": 0, "numeric_cells": 0, "header_rows": 0, "locator": "section[21]/table-wrap[1]#MASHLGR211656TB1"}}, {"id": "asset:table:pmid:28522612:2", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:b5756a459816cb57954f542ae724b65946eb99186f06bea9b7622164f0dd1bfb", "bytes": 211, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[22]/table-wrap[1]#MASHLGR211656TB2", "version": null, "note": "Brief comparison of variant discovery frameworks", "structure": {"pmcid": "PMC5538560", "section_index": 22, "section_title": "Comparison to existing cloud pipelines", "row_count": 0, "column_count": 0}, "table": {"label": "Table 2.", "caption": "Brief comparison of variant discovery frameworks", "rows": [], "row_count": 0, "column_count": 0, "numeric_cells": 0, "header_rows": 0, "locator": "section[22]/table-wrap[1]#MASHLGR211656TB2"}}], "gaps": []}, "analysis": {"state": "partial", "methods": [{"id": "method-1", "family": null, "specific": null, "label": "receiver operating characteristic (ROC) curves", "dsl_operations": [], "missing_operations": [], "expressible": null, "parameters": {}, "data_shapes": [], "evidence": {"score": 1.0, "band": "verbatim", "quote": "Calculations of true-positive (TP) and false-positive (FP) rates, based on unmasked regions of a known synthetically generated tumor's “truth” set (Ewing et al. 2015), for multiple combinations of parameter sets for the individual, intersected, and combined filtered call sets, is plotted on receiver operating characteristic (ROC) curves (Fig. 4B)."}}], "targets": [], "gaps": ["method.reader_named_unmapped"]}, "capability": {"state": "complete", "requirements": [{"capability_id": "capability:computational_analysis", "label": "Computational analysis platform", "assay_families": ["meta_analysis", "machine_learning", "survival_analysis", "statistical_regression", "pca", "molecular_docking", "network_analysis", "differential_expression", "gwas"], "availability_state": "owned", "tier_unlocked": "R1", "candidate": "Automated Assays Laravel application and simulated adapters"}], "gaps": []}, "readiness": {"state": "blocked", "tier": "R4", "blocking_axis": "data", "blocked_on": "data:accession_absent", "axes": {"method": {"tier": "R4", "expressible": false, "required_operations": [], "missing_operations": [], "basis": "The reader quoted the method the paper names (receiver operating characteristic (ROC) curves), but the corpus's method extractor could not map it onto a DSL operation, so the method is published but not expressible."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R4", "reachable": false, "accessions": [], "resolved_accessions": [], "statements": ["The GenomeVIP source code and associated scripts are freely available for academic use and are available through GitHub (https://github.com/ding-lab/GenomeVIP/) and as Supplemental Code. Users having Amazon Web Services (AWS) login credentials can launch a GenomeVIP server on the AWS cloud by instantiating server images located in the AWS public repository. GenomeVIP executes computations using a public run-time AWS image providing a nearly complete set of the required genomics software. Software packages on these images carry their own licensing and usage terms. For example, GenomeVIP requires users to provide the location of their own licensed copy of GATK (version 3.5 and higher supported). Installation of GenomeVIP on a local web server allows users to design and execute computations on a local high-performance compute cluster using local data or on Amazon's cloud using data stored at AWS; furthermore, GenomeVIP's internal configuration files may be edited manually to point to local versions of the tools on which GenomeVIP depends. GenomeVIP orchestrates many tools that are all upgraded independently, and these updates will be passed through to GenomeVIP users in the following ways: Tool updates not requiring user interface modification will be distributed in updated runtime images, but those requiring such modification will require an updated server image. Tool versions will accumulate rather than be replaced to preserve backward compatibility. Database updates will be managed similarly, although the user can alternatively specify the location of public or custom annotation VCFs that GenomeVIP can retrieve via FTP/HTTP or from Amazon cloud storage. Documentation, support, and further information is available through GitHub and the GenomeVIP home page at our Turnkey Variant Analysis Project website (http://tvap.genome.wustl.edu/tools/genomevip/)."], "basis": "The paper names no accession to its source data, so the data has to come from the authors."}}, "can_run": {"dsl_operations": [], "assets": ["source:pmid:28522612", "asset:table:pmid:28522612:1", "asset:table:pmid:28522612:2"], "steps": ["run_analysis"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:None"]}, "gaps": ["data:accession_absent"]}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": null, "independence": "same_provider"}, "evidence_check": {"method": "verbatim", "availability": "verbatim"}, "calls": 0, "usage": {}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:28522612", "type": "paper", "label": "pmid:28522612"}, {"id": "source:pmid:28522612", "type": "manuscript", "label": "PMID 28522612 full text"}, {"id": "data:geo:None", "type": "dataset", "label": "GEO None"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:28522612", "type": "paper", "label": "pmid:28522612"}, {"id": "source:pmid:28522612", "type": "manuscript", "label": "PMID 28522612 full text"}, {"id": "data:geo:None", "type": "dataset", "label": "GEO None"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-28522612", "type": "extraction", "used": ["source:pmid:28522612"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-None", "type": "accession_resolution", "used": ["data:geo:None"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:28522612", "parent_hash": "sha256:2b14b8cdab62b649f1d0480d210a12e285e7fe8b6f1e4ebc43752177043b23d0", "fork_of": null, "generation": 3}, "gaps": ["execution.not_run", "method.reader_named_unmapped", "review.human_critique", "review.independent_reader", "review.machine_critique", "step:obtain_source_data blocked on data:accession_absent"]},"meta":{"api_version":"v1","automation_ladder_snapshot":"ba34b49490d9bfaf","automation_ladder_caveats":["Method extraction is rule-based and has no hand-judged accuracy sample. Evidence bands order textual support; method agreement intervals are null (n=0), never probabilities. Work-type validation does not validate methods.","Operation coverage describes only explicitly named methods. It does not prove a complete protocol, compatible parameters, successful compilation or re-execution. Unrecognised or ambiguous methods require review.","Data reachability is a textual accession or public-data statement. No dataset was downloaded or checked for access, completeness or licence.","Capabilities are planning states seeded from the dated equipment register. No bench ownership, completed quote or partner booking is inferred. Procurement counts are dependencies, not guaranteed replications or financial returns.","Tier and blocker counts are deterministic assessments of this corpus, not measured agreement. R3 is reserved for procurement; unresolved methods and data require human work (R4). The most restrictive axis wins, with capability, method, data as tie-breaks. Resolving one blocker can leave another at the same tier."],"engine":"corpus_engine","engine_provider":"rule_based_v1+lex99e1195c7d6f","run_id":"run-20261023T122449232913","source":"esearch","source_detail":"PubMed mirror biomed_pubmed (read-only)","run_status":"complete","imported_at":"2026-11-03T20:16:52+00:00","generated_at":"2026-11-04T01:36:23+00:00","total_papers":5529,"total_assays_tracked":29,"automatable_assay_families":6,"validated":true,"caveat_count":9,"blocking_caveats":5,"caveats":[{"code":"low_evidence_dominates","basis":["4,152 of 5,529 classifications (75.1%) matched no cue evidence and sit at the 0.05 floor.","34 of 230 data_only calls (14.8%) are in that group."],"claim":"Work type and confidence bands","gloss":"Most records were classified from their title and framing alone, with assay-cue coverage at zero.","detail":"Most classifications in this run rest on no matched evidence at all. At the evidence floor the work type comes from title framing and a fixed prior, not from anything in the paper, so the published work-type split should be read as a rough triage signal rather than a measured distribution. The impact is bounded but not removed: since 2026-10-23 the engine excludes floor-confidence records from the shortlist entirely and publishes them separately as held out, so the recommendation is unaffected even though the census is.","status":"unverified","severity":"high"},{"code":"runtime_is_modelled","basis":["Runtime is summed from published per-assay hour figures. Timing awaits the first executed replication.","4,407 of 5,529 records (79.7%) model to 0.00 hours because no assay was matched, which the ranking then reads as \"cheapest\".","0 of 10 shortlisted records carry a 0.00-hour estimate."],"claim":"Estimated replication runtime","gloss":"The hour figures are estimates built from assay mentions; timing awaits the first executed replication.","detail":"The hour figures are a cost model derived from the bench steps implied by each matched assay family. The first executed replication will supply measured timing. Records without an assay match currently receive a zero-hour model value.","status":"unverified","severity":"high"},{"code":"signal_score_without_citations","basis":["5,529 of 5,529 records (100.0%) have no citation count from the source metadata."],"claim":"Signal score","gloss":"The signal score uses publication-type weight because the mirror supplied zero citation counts.","detail":"The source supplied no citation counts for any record in this run, so the signal score is publication-type weight only. The citation term of the ranking is inert here, and the shortlist is ordered by publication type alone.","status":"unverified","severity":"high"},{"code":"abstract_absent","basis":["1,667 of 5,529 records (30.2%) carry no abstract at all."],"claim":"Evidence base for classification","gloss":"Some records contain a title and publication type only, defining the available classification evidence.","detail":"Where the mirror contains a title and publication types only, those fields define the classifier evidence. A methods section is required for fuller automated and human review.","status":"unverified","severity":"medium"},{"code":"classifier_agreement_measured","basis":["Published two-way decision agreement 77.7% (310 of 399 decidable records) from a stratified hand-check of 438 real records.","Three-way diagnostic agreement 73.9% (288 of 390 decidable records).","data_only agreement 75.2% (100 of 133 decidable).","48 record(s) could not be decided from title and abstract and were excluded from the denominator.","56 analysis-only records were published under another work type, so the data_only share is not an upper bound."],"claim":"Published automatable decision","gloss":"This figure has been checked against a human reading the same papers, so we know how often it is right.","detail":"The published automatable / not-automatable distribution comes from a rule-based classifier that was hand-checked against a fixed ground-truth definition. The agreement rates below are measured, not estimated. The three-way work type remains a diagnostic and is reported separately.","status":"measured","severity":"high"},{"code":"llm_comparison_not_measured","basis":["rule_based_v1+lex99e1195c7d6f produced 5,529 of 5,529 classifications.","Measured on 438 labelled records; these are RULE-BASED figures, not model results."],"claim":"Rule-based versus LLM agreement","gloss":"Every number here is the rule engine’s own. Model comparison begins when a working API credential is connected and measured.","detail":"The published two-way decision agreed with a human reading on 310 of 399 decidable records (77.7%). The diagnostic three-way label agreed on 288 of 390 decidable records (73.9%). Every percentage in this run belongs to the rule engine. Model comparison begins when a working API credential is connected and measured.","status":"not_measured","severity":"high"},{"code":"confidence_is_a_band","basis":["low band: 135 of 210 hand-judged records were correct, 64.3% [57.6, 70.5] (95% CI).","medium band: 80 of 104 hand-judged records were correct, 76.9% [68.0, 84.0] (95% CI).","high band: 73 of 76 hand-judged records were correct, 96.0% [89.0, 98.7] (95% CI).","A fitted calibrated probability was built, measured and withdrawn: it overstated held-out accuracy and reorders nothing."],"claim":"Confidence band and evidence score","gloss":"The confidence band carries a measured accuracy interval; 0.85 represents relative rank strength.","detail":"Confidence on this run is a BAND plus its measured accuracy interval. The number stored alongside each record is a monotone evidence score that orders records; 0.85 represents relative rank strength. A fitted probability was withdrawn after it overstated held-out accuracy. Threshold on the band.","status":"measured","severity":"medium"},{"code":"three_way_split_is_diagnostic","basis":["The corpus is published at the two-way decision: automatable or not-automatable. The three-way split (data_only / physical / mixed) is published as a diagnostic with its measured reliability attached, not as a claim, because the rule engine's `mixed` call cannot be defended.","The engine called 22 record(s) mixed; 10 matched the human judgement (45.5%, 95% CI 26.9-65.3).","The engine's `mixed` call is right on 10/22 hand-judged records (45.5%, 95% CI 26.9%-65.3%); a constant `physical` guess scores 36.4%.","The engine's `mixed` call does not reliably beat a constant `physical` guess on the hand-judged records it labels mixed.","The sign of that difference flips between two independent samples, so the three-way refinement is not demonstrably informative.","The mixed stratum contributes a disproportionate share of errors relative to its size.","At title-only depth the physical/mixed split collapses: a title says that work was done, not whether it was also analysed."],"claim":"The published decision is two-way","gloss":"The three-way split is shown for diagnosis only. The published split is two ways.","detail":"Count and filter the corpus on automatable versus not-automatable. The data_only / physical / mixed split remains an internal engine diagnostic because the mixed call has lower measured reliability.","status":"measured","severity":"medium"},{"code":"automatable_flag_unproven","basis":["6 of 29 assay families are marked automatable now: meta_analysis, machine_learning, survival_analysis, pca, molecular_docking, differential_expression.","The flag is a rule over assay family and work type; validation begins with the first executed replication.","It inherits the 75.2% data_only agreement rate, because the flag requires the record to be analysis-only."],"claim":"Automatable now","gloss":"This flag marks assay families the rules classify as data-only. The first executed replication will validate it.","detail":"This flag marks families the rules consider replicable from data alone. Its validity depends on the analysis-only classification and will be measured through an executed replication.","status":"unverified","severity":"medium"}],"confidence_policy":"band_with_measured_interval","confidence_contract":{"policy":"band_with_measured_interval","summary":"Confidence is reported as a BAND with a measured accuracy interval. The raw evidence score supplies monotone ordering. A fitted point estimate was withdrawn after it overstated held-out accuracy.","evidence_score":"A monotone evidence score in [0,1] built from cue mass, axis separation and text coverage. Use it to order records. Interpret 0.85 as relative rank strength.","confidence_band":"low | medium | high. Consumers threshold on this value.","band_accuracy":"Wilson 95% interval on the measured agreement of the hand-judged records in this band.","calibrated_confidence":"WITHDRAWN. Reintroduction requires held-out evidence demonstrating reliable estimates across every bin."},"band_accuracy":{"low":{"n":210,"low":0.576,"band":"low","high":0.7046,"agree":135,"accuracy":0.6429},"high":{"n":76,"low":0.8903,"band":"high","high":0.9865,"agree":73,"accuracy":0.9605},"medium":{"n":104,"low":0.6795,"band":"medium","high":0.8397,"agree":80,"accuracy":0.7692}},"provider":"rule_based_v1+lex99e1195c7d6f","lexicon_id":"99e1195c7d6f","contract_published_at":"2026-10-23T12:25:29.022232+00:00","confidence_is_band":true,"confidence_is_probability":false,"decision_taxonomy":"two_way","decidable_fraction_two_way":0.8854,"decidable_fraction_two_way_low":0.8565,"decidable_fraction_two_way_high":0.9143,"decidable_fraction_three_way":0.8586,"decidable_fraction_three_way_low":0.8287,"decidable_fraction_three_way_high":0.8884,"decidable_population":5529,"validation_sample_size":438,"three_way_cost_fraction":0.0268,"three_way_cost_records":148,"decision_counts":{"automatable":230,"not_automatable":5299},"decision_split":{"automatable":{"count":230,"share":0.04159884246699222},"not_automatable":{"count":5299,"share":0.9584011575330078}},"diagnostic_work_type_counts":{"mixed":24,"physical":5275,"data_only":230}}}