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pmid:17932064
COXPRESdb: a database of coexpressed gene networks in mammals.
Takeshi Obayashi · Shinpei Hayashi · Masayuki Shibaoka · Motoshi Saeki · Hiroyuki Ohta · Kengo Kinoshita
Nucleic acids research · 2008 doi:10.1093/nar/gkm840
Paper
complete
Experiment
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Data
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Analysis
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Execution
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Complete file
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Coexpressed gene databases derived from publicly available GeneChip data are widely used in Arabidopsis research, but platforms that examine coexpression for higher mammals are rather limited. Therefore, we have constructed a new database, COXPRESdb (coexpressed gene database) (http://coxpresdb.hgc.jp), for coexpressed gene lists and networks in human and mouse. Coexpression data could be calculated for 19 777 and 21 036 genes in human and mouse, respectively, by using the GeneChip data in NCBI GEO. COXPRESdb enables analysis of the four types of coexpression networks: (i) highly coexpressed genes for every gene, (ii) genes with the same GO annotation, (iii) genes expressed in the same tissue and (iv) user-defined gene sets. When the networks became too big for the static picture on the web in GO networks or in tissue networks, we used Google Maps API to visualize them interactively. 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