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pmid:26193361

Proteomic Characterisation of the Salt Gland-Enriched Tissues of the Mangrove Tree Species Avicennia officinalis.

Wee-Kee Tan · Teck-Kwang Lim · Chiang-Shiong Loh · Prakash Kumar · Qingsong Lin

PloS one · 2015 doi:10.1371/journal.pone.0133386

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Experiment

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Analysis

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title
Proteomic Characterisation of the Salt Gland-Enriched Tissues of the Mangrove Tree Species Avicennia officinalis.
doi
10.1371/journal.pone.0133386
pmid
26193361
authors array · 5 items
[0]
Wee-Kee Tan
[1]
Teck-Kwang Lim
[2]
Chiang-Shiong Loh
[3]
Prakash Kumar
[4]
Qingsong Lin
journal
PloS one
year
2015
abstract
Plant salt glands are nature's desalination devices that harbour potentially useful information pertaining to salt and water transport during secretion. As part of the program toward deciphering secretion mechanisms in salt glands, we used shotgun proteomics to compare the protein profiles of salt gland-enriched (isolated epidermal peels) and salt gland-deprived (mesophyll) tissues of the mangrove species Avicennia officinalis. The purpose of the work is to identify proteins that are present in the salt gland-enriched tissues. An average of 2189 and 977 proteins were identified from the epidermal peel and mesophyll tissues, respectively. Among these, 2188 proteins were identified in salt gland-enriched tissues and a total of 1032 selected proteins were categorized by Gene Ontology (GO) analysis. This paper reports for the first time the proteomic analysis of salt gland-enriched tissues of a mangrove tree species. Candidate proteins that may play a role in the desalination process of the mangrove salt glands and their potential localization were identified. Information obtained from this study paves the way for future proteomic research aiming at elucidating the molecular mechanism underlying secretion in plant salt glands. The data have been deposited to the ProteomeXchange with identifier PXD000771.
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Identified proteins for each biological replicate were selected based on a false discovery rate (FDR) of < 1%.
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sections[4] "Sample preparation and LC-MS/MS analysis" paragraph 5
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Identified proteins for each biological replicate were selected based on a false discovery rate (FDR) of < 1%.
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The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository with the dataset identifier PXD000771.
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sections[10] "Data Availability" paragraph 2
quote
The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository with the dataset identifier PXD000771.
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The study used nwCompare to identify proteins found in salt gland-enriched epidermal peels but not mesophyll, yielding 2,188 salt gland-enriched proteins, with the underlying proteomics data deposited in ProteomeXchange under PXD000771.
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https://doi.org/10.1371/journal.pone.0133386
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Proteomic characterisation of the salt gland-enriched tissues of the mangrove tree species Avicennia officinalis
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Number of proteins identified from adaxial (upper) epidermal peels and mesophyll tissues of the leaves of A. officinalis.
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Results
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Table 1
caption
Number of proteins identified from adaxial (upper) epidermal peels and mesophyll tissues of the leaves of A. officinalis.
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[1]
Average no. of proteins identified (±SE)
[1] array · 2 items
[0]
Epidermal peels
[1]
2189 ± 128
[2] array · 2 items
[0]
Mesophyll tissues
[1]
977 ± 150
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Selected list of proteins identified from salt gland-enriched epidermal tissues of A. officinalis.These proteins are identified in the epidermal tissues but not in the mesophyll tissues of A. officinalis and only those that are present in two out of the three biological replicates are selected for further anlaysis. The full list of proteins is presented in S8 Table.
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Table 2
caption
Selected list of proteins identified from salt gland-enriched epidermal tissues of A. officinalis.These proteins are identified in the epidermal tissues but not in the mesophyll tissues of A. officinalis and only those that are present in two out of the three biological replicates are selected for further anlaysis. The full list of proteins is presented in S8 Table.
rows array · 117 items
[0] array · 9 items
[0]
[1]
[2]
[3]
[4]
Unused ProtScore*
[5]
% Coverage #
[6]
Peptides (95%) ^
[7]
[8]
[1] array · 15 items
[0]
No.
[1]
gi Acession No.
[2]
Swiss-Prot ID
[3]
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[4]
T1
[5]
T2
[6]
T3
[7]
T1
[8]
T2
[9]
T3
[10]
T1
[11]
T2
[12]
T3
[13]
Protein Description
[14]
Species
[2] array · 15 items
[0]
1
[1]
gi|3912949
[2]
O49996
[3]
CL15843.Contig3_All
[4]
2.27
[5]
8.00
[6]
12.21
[7]
42.90
[8]
34.30
[9]
52.70
[10]
6
[11]
5
[12]
9
[13]
14-3-3-like protein D
[14]
Nicotiana tabacum
[3] array · 15 items
[0]
2
[1]
gi|224136700
[2]
Q9LT08
[3]
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[4]
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[5]
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[6]
4.36
[7]
32.10
[8]
33.00
[9]
22.10
[10]
6
[11]
4
[12]
3
[13]
26S proteasome non-ATPase regulatory subunit 14
[14]
Arabidopsis thaliana
[4] array · 15 items
[0]
3
[1]
gi|3914467
[2]
P93768
[3]
Unigene16875_All
[4]
2.00
[5]
2.00
[6]
0.36
[7]
30.30
[8]
30.30
[9]
30.30
[10]
1
[11]
1
[12]
1
[13]
26S proteasome non-ATPase regulatory subunit 3
[14]
Nicotiana tabacum
[5] array · 15 items
[0]
4
[1]
gi|350538091
[2]
O04059
[3]
CL2261.Contig1_All
[4]
7.52
[5]
11.08
[6]
6.18
[7]
22.30
[8]
19.20
[9]
20.80
[10]
5
[11]
6
[12]
3
[13]
3,4-dihydroxy-2-butanone kinase
[14]
Solanum lycopersicum
[6] array · 15 items
[0]
5
[1]
gi|255584390
[2]
Q9LVM1
[3]
CL12689.Contig2_All
[4]
0.91
[5]
2.66
[6]
2.00
[7]
8.90
[8]
13.80
[9]
15.40
[10]
2
[11]
1
[12]
1
[13]
ABC transporter B family member 25
[14]
Arabidopsis thaliana
[7] array · 15 items
[0]
6
[1]
gi|255552969
[2]
Q9M1H3
[3]
Unigene32800_All
[4]
4.88
[5]
5.62
[6]
2.01
[7]
18.40
[8]
17.60
[9]
18.20
[10]
4
[11]
3
[12]
1
[13]
ABC transporter F family member 4
[14]
Arabidopsis thaliana
[8] array · 15 items
[0]
7
[1]
gi|296090419
[2]
Q7PC87
[3]
CL4209.Contig1_All
[4]
4.00
[5]
2.01
[6]
21.16
[7]
44.40
[8]
46.80
[9]
53.60
[10]
8
[11]
10
[12]
13
[13]
ABC transporter G family member 34
[14]
Arabidopsis thaliana
[9] array · 15 items
[0]
8
[1]
gi|359484370
[2]
Q8RXE7
[3]
Unigene4379_All
[4]
4.83
[5]
2.00
[6]
2.18
[7]
19.20
[8]
15.10
[9]
13.60
[10]
3
[11]
1
[12]
1
[13]
ADP-ribosylation factor GTPase-activating protein AGD14
[14]
Arabidopsis thaliana
[10] array · 15 items
[0]
9
[1]
gi|255546541
[2]
Q56YU0
[3]
CL13289.Contig1_All
[4]
3.08
[5]
4.09
[6]
6.02
[7]
21.10
[8]
25.90
[9]
19.70
[10]
3
[11]
3
[12]
3
[13]
Aldehyde dehydrogenase family 2 member C4
[14]
Arabidopsis thaliana
[11] array · 15 items
[0]
10
[1]
gi|297823651
[2]
Q0PGJ6
[3]
CL5791.Contig3_All
[4]
4.87
[5]
8.40
[6]
9.74
[7]
39.20
[8]
47.70
[9]
52.30
[10]
6
[11]
7
[12]
7
[13]
Aldo-keto reductase family 4 member C9
[14]
Arabidopsis thaliana
[12] array · 15 items
[0]
11
[1]
gi|50345961
[2]
Q7XSQ9
[3]
CL16514.Contig4_All
[4]
4.00
[5]
4.01
[6]
6.03
[7]
39.50
[8]
43.00
[9]
36.00
[10]
12
[11]
12
[12]
22
[13]
Aquaporin PIP1-2
[14]
Oryza sativa subsp. japonica
[13] array · 15 items
[0]
12
[1]
gi|17940742
[2]
Q7XLR1
[3]
Unigene32737_All
[4]
4.00
[5]
2.09
[6]
2.00
[7]
29.60
[8]
33.70
[9]
27.60
[10]
7
[11]
5
[12]
4
[13]
Aquaporin PIP2-6
[14]
Oryza sativa subsp. japonica
[14] array · 15 items
[0]
13
[1]
gi|255541428
[2]
[3]
CL8427.Contig3_All
[4]
4.09
[5]
4.00
[6]
2.00
[7]
16.40
[8]
11.60
[9]
6.20
[10]
4
[11]
2
[12]
1
[13]
Arsenical pump-driving atpase
[14]
Ricinus communis
[15] array · 15 items
[0]
14
[1]
gi|2493046
[2]
Q40089
[3]
CL7437.Contig2_All
[4]
6.89
[5]
5.65
[6]
12.70
[7]
26.10
[8]
46.80
[9]
53.70
[10]
4
[11]
5
[12]
9
[13]
ATP synthase subunit delta'
[14]
Ipomoea batatas
[16] array · 15 items
[0]
15
[1]
gi|225454791
[2]
[3]
Unigene6969_All
[4]
3.38
[5]
4.00
[6]
1.54
[7]
47.10
[8]
40.20
[9]
14.90
[10]
2
[11]
2
[12]
1
[13]
ATPase family AAA domain-containing protein 3-B
[14]
Vitis vinifera
[17] array · 15 items
[0]
16
[1]
gi|224145672
[2]
P28583
[3]
CL274.Contig2_All
[4]
2.39
[5]
1.27
[6]
1.27
[7]
15.50
[8]
22.00
[9]
17.40
[10]
1
[11]
1
[12]
1
[13]
Calcium-dependent protein kinase SK5
[14]
Glycine max
[18] array · 15 items
[0]
17
[1]
gi|225466204
[2]
Q9CAL3
[3]
CL14803.Contig3_All
[4]
4.96
[5]
4.87
[6]
8.92
[7]
18.60
[8]
22.90
[9]
23.10
[10]
3
[11]
3
[12]
5
[13]
Cysteine-rich receptor-like protein kinase 2
[14]
Arabidopsis thaliana
[19] array · 15 items
[0]
18
[1]
gi|225452304
[2]
Q93ZC9
[3]
Unigene4267_All
[4]
2.33
[5]
3.39
[6]
4.71
[7]
12.10
[8]
11.20
[9]
34.00
[10]
1
[11]
2
[12]
3
[13]
Glucuronokinase 1
[14]
Arabidopsis thaliana
[20] array · 15 items
[0]
19
[1]
gi|225445585
[2]
[3]
CL12018.Contig2_All
[4]
3.12
[5]
2.33
[6]
2.04
[7]
16.20
[8]
15.80
[9]
12.00
[10]
3
[11]
1
[12]
1
[13]
GTPase-activating protein gyp7-like
[14]
Vitis vinifera
[21] array · 15 items
[0]
20
[1]
gi|351721140
[2]
O64477
[3]
Unigene30402_All
[4]
2.03
[5]
2.92
[6]
3.18
[7]
10.10
[8]
14.00
[9]
11.90
[10]
1
[11]
2
[12]
2
[13]
G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
[14]
Arabidopsis thaliana
[22] array · 15 items
[0]
21
[1]
gi|296081939
[2]
F4JMJ1
[3]
CL2876.Contig1_All
[4]
13.17
[5]
7.78
[6]
18.76
[7]
40.10
[8]
32.60
[9]
41.30
[10]
11
[11]
7
[12]
10
[13]
Heat shock 70 kDa protein 17
[14]
Arabidopsis thaliana
[23] array · 15 items
[0]
22
[1]
gi|224099789
[2]
Q9SKY8
[3]
CL2714.Contig2_All
[4]
4.14
[5]
2.01
[6]
2.44
[7]
17.60
[8]
4.20
[9]
9.10
[10]
2
[11]
1
[12]
1
[13]
Heat shock 70 kDa protein 8
[14]
Arabidopsis thaliana
[24] array · 15 items
[0]
23
[1]
gi|45331281
[2]
P09189
[3]
CL2270.Contig3_All
[4]
6.03
[5]
4.34
[6]
8.12
[7]
56.00
[8]
52.10
[9]
59.00
[10]
32
[11]
33
[12]
41
[13]
Heat shock cognate 70 kDa protein
[14]
Petunia hybrida
[25] array · 15 items
[0]
24
[1]
gi|240255879
[2]
[3]
CL2610.Contig2_All
[4]
4.06
[5]
4.00
[6]
6.00
[7]
44.80
[8]
44.80
[9]
63.20
[10]
2
[11]
2
[12]
3
[13]
Heat shock factor binding protein
[14]
Arabidopsis thaliana
[26] array · 15 items
[0]
25
[1]
gi|356540381
[2]
Q43468
[3]
CL13990.Contig2_All
[4]
2.09
[5]
6.00
[6]
2.03
[7]
53.40
[8]
52.30
[9]
40.40
[10]
4
[11]
4
[12]
3
[13]
Heat shock protein STI
[14]
Glycine max
[27] array · 15 items
[0]
26
[1]
gi|359473854
[2]
[3]
Unigene32812_All
[4]
2.14
[5]
2.09
[6]
4.00
[7]
28.70
[8]
25.30
[9]
14.30
[10]
2
[11]
1
[12]
2
[13]
hsp70 nucleotide exchange factor FES1
[14]
Vitis vinifera
[28] array · 15 items
[0]
27
[1]
gi|297793865
[2]
Q9FM19
[3]
Unigene2776_All
[4]
3.72
[5]
3.91
[6]
9.97
[7]
32.20
[8]
40.10
[9]
40.80
[10]
6
[11]
7
[12]
11
[13]
Hypersensitive-induced response protein 1
[14]
Arabidopsis thaliana
[29] array · 15 items
[0]
28
[1]
gi|255576916
[2]
O48788
[3]
Unigene6256_All
[4]
3.02
[5]
2.41
[6]
2.00
[7]
27.50
[8]
27.50
[9]
24.40
[10]
4
[11]
4
[12]
2
[13]
Inactive receptor kinase At2g26730
[14]
Arabidopsis thaliana
[30] array · 15 items
[0]
29
[1]
gi|2208908
[2]
Q96303
[3]
CL8176.Contig2_All
[4]
12.13
[5]
12.15
[6]
4.64
[7]
18.10
[8]
17.50
[9]
21.40
[10]
9
[11]
8
[12]
7
[13]
Inorganic phosphate transporter 1–4
[14]
Arabidopsis thaliana
[31] array · 15 items
[0]
30
[1]
gi|357440961
[2]
Q8GYF4
[3]
CL8176.Contig4_All
[4]
6.32
[5]
6.68
[6]
10.07
[7]
19.80
[8]
18.50
[9]
22.20
[10]
7
[11]
6
[12]
6
[13]
Inorganic phosphate transporter 1–5
[14]
Arabidopsis thaliana
[32] array · 15 items
[0]
31
[1]
gi|297740564
[2]
C0LGE0
[3]
CL3330.Contig3_All
[4]
20.94
[5]
18.55
[6]
25.32
[7]
29.50
[8]
26.70
[9]
31.40
[10]
13
[11]
12
[12]
17
[13]
LRR receptor-like serine/threonine-protein kinase At1g07650
[14]
Arabidopsis thaliana
[33] array · 15 items
[0]
32
[1]
gi|224112549
[2]
C0LGG9
[3]
Unigene4496_All
[4]
2.01
[5]
2.05
[6]
2.00
[7]
22.00
[8]
26.00
[9]
17.10
[10]
2
[11]
2
[12]
1
[13]
LRR receptor-like serine/threonine-protein kinase At1g53440
[14]
Arabidopsis thaliana
[34] array · 15 items
[0]
33
[1]
gi|359485959
[2]
C0LGH3
[3]
CL2732.Contig3_All
[4]
4.65
[5]
7.56
[6]
5.09
[7]
25.50
[8]
15.20
[9]
18.80
[10]
4
[11]
4
[12]
4
[13]
LRR receptor-like serine/threonine-protein kinase At1g56140
[14]
Arabidopsis thaliana
[35] array · 15 items
[0]
34
[1]
gi|359493576
[2]
C0LGQ5
[3]
Unigene30432_All
[4]
6.19
[5]
5.03
[6]
11.29
[7]
31.70
[8]
27.00
[9]
34.60
[10]
5
[11]
4
[12]
7
[13]
LRR receptor-like serine/threonine-protein kinase GSO1
[14]
Arabidopsis thaliana
[36] array · 15 items
[0]
35
[1]
gi|225444063
[2]
[3]
CL8211.Contig2_All
[4]
12.44
[5]
7.93
[6]
11.21
[7]
33.80
[8]
29.40
[9]
37.30
[10]
7
[11]
4
[12]
8
[13]
obg-like ATPase 1
[14]
Vitis vinifera
[37] array · 15 items
[0]
36
[1]
gi|13785471
[2]
Q9T074
[3]
CL2927.Contig4_All
[4]
22.73
[5]
13.53
[6]
24.38
[7]
36.50
[8]
26.90
[9]
40.80
[10]
17
[11]
8
[12]
16
[13]
Phosphoenolpyruvate carboxykinase [ATP]
[14]
Arabidopsis thaliana
[38] array · 15 items
[0]
37
[1]
gi|225442595
[2]
Q66GQ3
[3]
CL2133.Contig8_All
[4]
9.92
[5]
12.24
[6]
17.14
[7]
33.00
[8]
34.90
[9]
32.50
[10]
5
[11]
8
[12]
11
[13]
Protein disulfide isomerase-like 1–6
[14]
Arabidopsis thaliana
[39] array · 15 items
[0]
38
[1]
gi|225459342
[2]
Q69SA9
[3]
CL4543.Contig4_All
[4]
0.86
[5]
2.84
[6]
2.29
[7]
22.20
[8]
29.60
[9]
22.20
[10]
1
[11]
2
[12]
2
[13]
Protein disulfide isomerase-like 5–4
[14]
Oryza sativa subsp. japonica
[40] array · 15 items
[0]
39
[1]
gi|359494074
[2]
[3]
CL2740.Contig3_All
[4]
2.01
[5]
6.22
[6]
4.06
[7]
39.20
[8]
60.80
[9]
46.00
[10]
6
[11]
4
[12]
6
[13]
Protein grpE-like
[14]
Vitis vinifera
[41] array · 15 items
[0]
40
[1]
gi|45433315
[2]
P31569
[3]
CL4418.Contig4_All
[4]
4.00
[5]
1.76
[6]
3.06
[7]
29.60
[8]
30.10
[9]
23.60
[10]
6
[11]
5
[12]
6
[13]
Protein ycf2
[14]
Oenothera villaricae
[42] array · 15 items
[0]
41
[1]
gi|357445105
[2]
B9DFG5
[3]
Unigene196_All
[4]
2.00
[5]
6.02
[6]
7.52
[7]
22.80
[8]
20.10
[9]
41.40
[10]
6
[11]
4
[12]
4
[13]
PTI1-like tyrosine-protein kinase 3
[14]
Arabidopsis thaliana
[43] array · 15 items
[0]
42
[1]
gi|242064260
[2]
Q06572
[3]
CL6187.Contig3_All
[4]
4.00
[5]
4.01
[6]
2.00
[7]
10.10
[8]
32.40
[9]
26.30
[10]
2
[11]
3
[12]
1
[13]
Pyrophosphate-energized vacuolar membrane proton pump
[14]
Hordeum vulgare
[44] array · 15 items
[0]
43
[1]
gi|356526237
[2]
P31414
[3]
CL3527.Contig3_All
[4]
2.01
[5]
2.00
[6]
4.35
[7]
11.00
[8]
39.70
[9]
37.00
[10]
2
[11]
2
[12]
4
[13]
Pyrophosphate-energized vacuolar membrane proton pump 1
[14]
Arabidopsis thaliana
[45] array · 15 items
[0]
44
[1]
gi|359477316
[2]
Q42736
[3]
CL384.Contig14_All
[4]
4.08
[5]
10.48
[6]
2.04
[7]
18.90
[8]
21.00
[9]
21.80
[10]
6
[11]
6
[12]
6
[13]
Pyruvate, phosphate dikinase
[14]
Flaveria pringlei
[46] array · 15 items
[0]
45
[1]
gi|258678027
[2]
Q9M651
[3]
CL13915.Contig4_All
[4]
1.19
[5]
2.01
[6]
2.00
[7]
25.60
[8]
31.80
[9]
18.50
[10]
1
[11]
1
[12]
1
[13]
RAN GTPase-activating protein 2
[14]
Arabidopsis thaliana
[47] array · 15 items
[0]
46
[1]
gi|7672732
[2]
P43298
[3]
CL15187.Contig2_All
[4]
3.87
[5]
4.05
[6]
6.86
[7]
15.10
[8]
17.60
[9]
12.40
[10]
3
[11]
2
[12]
4
[13]
Receptor protein kinase TMK1
[14]
Arabidopsis thaliana
[48] array · 15 items
[0]
47
[1]
gi|224087891
[2]
Q9SCZ4
[3]
CL2320.Contig9_All
[4]
2.00
[5]
1.42
[6]
2.00
[7]
8.20
[8]
9.50
[9]
6.70
[10]
1
[11]
1
[12]
1
[13]
Receptor-like protein kinase FERONIA
[14]
Arabidopsis thaliana
[49] array · 15 items
[0]
48
[1]
gi|225427230
[2]
Q944A7
[3]
CL5141.Contig1_All
[4]
4.19
[5]
5.46
[6]
1.57
[7]
28.10
[8]
22.00
[9]
21.30
[10]
4
[11]
3
[12]
1
[13]
Serine/threonine-protein kinase At4g35230
[14]
Arabidopsis thaliana
[50] array · 15 items
[0]
49
[1]
gi|225426412
[2]
Q9FHD7
[3]
CL7376.Contig1_All
[4]
2.59
[5]
7.34
[6]
8.62
[7]
11.30
[8]
25.50
[9]
25.70
[10]
3
[11]
4
[12]
5
[13]
Serine/threonine-protein kinase At5g41260
[14]
Arabidopsis thaliana
[51] array · 15 items
[0]
50
[1]
gi|145327199
[2]
Q9CAR3
[3]
CL8777.Contig2_All
[4]
2.73
[5]
2.08
[6]
2.00
[7]
13.80
[8]
12.90
[9]
18.40
[10]
2
[11]
1
[12]
1
[13]
SNF1-related protein kinase regulatory subunit gamma-1-like
[14]
Arabidopsis thaliana
[52] array · 15 items
[0]
51
[1]
gi|194696644
[2]
Q84TI7
[3]
Unigene26174_All
[4]
2.57
[5]
2.20
[6]
2.51
[7]
24.30
[8]
38.60
[9]
37.10
[10]
1
[11]
1
[12]
1
[13]
Sodium transporter HKT1
[14]
Arabidopsis thaliana
[53] array · 15 items
[0]
52
[1]
gi|359495505
[2]
Q9LRB0
[3]
CL315.Contig4_All
[4]
2.00
[5]
0.74
[6]
2.00
[7]
11.60
[8]
17.60
[9]
6.80
[10]
1
[11]
1
[12]
1
[13]
Sphingoid long-chain bases kinase 1
[14]
Arabidopsis thaliana
[54] array · 15 items
[0]
53
[1]
gi|225443039
[2]
[3]
CL10751.Contig1_All
[4]
2.00
[5]
2.00
[6]
2.00
[7]
5.20
[8]
12.30
[9]
11.90
[10]
1
[11]
1
[12]
1
[13]
Uncharacterized membrane protein YMR155W
[14]
Vitis vinifera
[55] array · 15 items
[0]
54
[1]
gi|255542872
[2]
Q8LGG8
[3]
Unigene11881_All
[4]
0.73
[5]
1.41
[6]
2.00
[7]
12.00
[8]
16.40
[9]
22.00
[10]
1
[11]
2
[12]
2
[13]
Universal stress protein A-like protein
[14]
Arabidopsis thaliana
[56] array · 15 items
[0]
55
[1]
gi|255556366
[2]
Q8LGG8
[3]
Unigene2529_All
[4]
11.58
[5]
1.08
[6]
10.10
[7]
54.80
[8]
36.90
[9]
38.20
[10]
9
[11]
5
[12]
7
[13]
Universal stress protein A-like protein
[14]
Arabidopsis thaliana
[57] array · 15 items
[0]
56
[1]
gi|255554204
[2]
O23016
[3]
CL6704.Contig3_All
[4]
2.99
[5]
3.24
[6]
2.35
[7]
23.20
[8]
23.80
[9]
19.20
[10]
2
[11]
2
[12]
2
[13]
Voltage-gated potassium channel subunit beta
[14]
Arabidopsis thaliana
[58] array · 15 items
[0]
57
[1]
gi|357501685
[2]
Q9LHA4
[3]
CL3237.Contig3_All
[4]
9.72
[5]
1.48
[6]
12.15
[7]
18.50
[8]
22.50
[9]
21.70
[10]
6
[11]
6
[12]
6
[13]
V-type proton ATPase subunit d2
[14]
Arabidopsis thaliana
[59] array · 15 items
[0]
58
[1]
gi|225463325
[2]
Q9ZQX4
[3]
Unigene24187_All
[4]
8.32
[5]
11.16
[6]
9.34
[7]
43.90
[8]
50.00
[9]
38.50
[10]
5
[11]
7
[12]
6
[13]
V-type proton ATPase subunit F
[14]
Arabidopsis thaliana
[60] array · 15 items
[0]
59
[1]
gi|225432878
[2]
Q0WNY5
[3]
CL3494.Contig3_All
[4]
6.01
[5]
5.30
[6]
5.91
[7]
21.00
[8]
22.10
[9]
20.80
[10]
3
[11]
4
[12]
3
[13]
Wall-associated receptor kinase-like 18
[14]
Arabidopsis thaliana
[61] array · 15 items
[0]
60
[1]
gi|124221924
[2]
Q9LZM4
[3]
CL6319.Contig3_All
[4]
15.22
[5]
6.29
[6]
8.21
[7]
23.30
[8]
24.50
[9]
28.10
[10]
7
[11]
3
[12]
6
[13]
Wall-associated receptor kinase-like 20
[14]
Arabidopsis thaliana
[62] array · 15 items
[0]
61
[1]
gi|255569405
[2]
Q8RXN0
[3]
CL4681.Contig3_All
[4]
6.01
[5]
1.81
[6]
[7]
18.60
[8]
15.70
[9]
[10]
3
[11]
1
[12]
[13]
ABC transporter G family member 11
[14]
Arabidopsis thaliana
[63] array · 15 items
[0]
62
[1]
gi|171854675
[2]
P49608
[3]
CL2995.Contig26_All
[4]
2.00
[5]
2.00
[6]
[7]
29.80
[8]
14.60
[9]
[10]
1
[11]
1
[12]
[13]
Aconitate hydratase
[14]
Cucurbita maxima
[64] array · 15 items
[0]
63
[1]
gi|18076583
[2]
Q8S9L6
[3]
CL9653.Contig1_All
[4]
2.00
[5]
2.01
[6]
[7]
9.90
[8]
11.00
[9]
[10]
1
[11]
1
[12]
[13]
Cysteine-rich receptor-like protein kinase 29
[14]
Arabidopsis thaliana
[65] array · 15 items
[0]
64
[1]
gi|225445342
[2]
[3]
CL13252.Contig2_All
[4]
0.85
[5]
3.64
[6]
[7]
10.50
[8]
7.40
[9]
[10]
2
[11]
4
[12]
[13]
dnaJ homolog subfamily C member 13-like
[14]
Vitis vinifera
[66] array · 15 items
[0]
65
[1]
gi|255556438
[2]
Q9SEE5
[3]
Unigene35913_All
[4]
2.00
[5]
2.00
[6]
[7]
18.40
[8]
22.60
[9]
[10]
3
[11]
3
[12]
[13]
Galactokinase
[14]
Arabidopsis thaliana
[67] array · 15 items
[0]
66
[1]
gi|225463623
[2]
[3]
CL14543.Contig1_All
[4]
3.87
[5]
1.70
[6]
[7]
18.30
[8]
9.00
[9]
[10]
3
[11]
2
[12]
[13]
Glycerol kinase isoform 1
[14]
Vitis vinifera
[68] array · 15 items
[0]
67
[1]
gi|359497728
[2]
Q9ASS4
[3]
CL4159.Contig1_All
[4]
2.22
[5]
3.37
[6]
[7]
21.00
[8]
24.50
[9]
[10]
3
[11]
3
[12]
[13]
Inactive leucine-rich repeat receptor-like protein kinase At5g48380
[14]
Arabidopsis thaliana
[69] array · 15 items
[0]
68
[1]
gi|255552774
[2]
O04567
[3]
Unigene22230_All
[4]
1.41
[5]
0.55
[6]
[7]
8.60
[8]
19.50
[9]
[10]
1
[11]
2
[12]
[13]
Inactive receptor kinase At1g27190
[14]
Arabidopsis thaliana
[70] array · 15 items
[0]
69
[1]
gi|255586379
[2]
Q9LVM0
[3]
CL2318.Contig1_All
[4]
2.00
[5]
3.46
[6]
[7]
13.80
[8]
17.10
[9]
[10]
1
[11]
2
[12]
[13]
Inactive receptor kinase At5g58300
[14]
Arabidopsis thaliana
[71] array · 15 items
[0]
70
[1]
gi|225423806
[2]
Q9LI83
[3]
CL3370.Contig1_All
[4]
2.00
[5]
1.61
[6]
[7]
8.90
[8]
8.20
[9]
[10]
1
[11]
1
[12]
[13]
Phospholipid-transporting ATPase 10
[14]
Arabidopsis thaliana
[72] array · 15 items
[0]
71
[1]
gi|359485026
[2]
Q03194
[3]
CL16623.Contig1_All
[4]
2.16
[5]
0.83
[6]
[7]
24.60
[8]
18.20
[9]
[10]
3
[11]
2
[12]
[13]
Plasma membrane ATPase 4
[14]
Nicotiana plumbaginifolia
[73] array · 15 items
[0]
72
[1]
gi|125535713
[2]
Q2QY12
[3]
Unigene37237_All
[4]
0.79
[5]
2.00
[6]
[7]
28.40
[8]
35.80
[9]
[10]
1
[11]
1
[12]
[13]
Plasma membrane-type calcium-transporting ATPase 4
[14]
Oryza sativa subsp. japonica
[74] array · 15 items
[0]
73
[1]
gi|225448277
[2]
Q9FY75
[3]
CL2807.Contig2_All
[4]
2.04
[5]
2.02
[6]
[7]
4.90
[8]
4.90
[9]
[10]
1
[11]
1
[12]
[13]
Potassium transporter 7
[14]
Arabidopsis thaliana
[75] array · 15 items
[0]
74
[1]
gi|147768303
[2]
Q2MHE4
[3]
CL2457.Contig4_All
[4]
3.92
[5]
1.82
[6]
[7]
29.10
[8]
12.60
[9]
[10]
2
[11]
1
[12]
[13]
Serine/threonine-protein kinase HT1
[14]
Arabidopsis thaliana
[76] array · 15 items
[0]
75
[1]
gi|255540259
[2]
Q8LBB2
[3]
CL2181.Contig2_All
[4]
4.97
[5]
3.84
[6]
[7]
22.30
[8]
25.40
[9]
[10]
3
[11]
2
[12]
[13]
SNF1-related protein kinase regulatory subunit gamma-1
[14]
Arabidopsis thaliana
[77] array · 15 items
[0]
76
[1]
gi|350535282
[2]
Q9LKW9
[3]
Unigene18167_All
[4]
2.00
[5]
2.00
[6]
[7]
21.30
[8]
12.60
[9]
[10]
1
[11]
1
[12]
[13]
Sodium/hydrogen exchanger 7
[14]
Arabidopsis thaliana
[78] array · 15 items
[0]
77
[1]
gi|224141283
[2]
Q8LGG8
[3]
CL2994.Contig3_All
[4]
2.00
[5]
2.20
[6]
[7]
16.60
[8]
14.90
[9]
[10]
1
[11]
1
[12]
[13]
Universal stress protein A-like protein
[14]
Arabidopsis thaliana
[79] array · 15 items
[0]
78
[1]
gi|285309967
[2]
O04916
[3]
CL2995.Contig22_All
[4]
4.00
[5]
[6]
5.01
[7]
22.90
[8]
[9]
22.40
[10]
2
[11]
[12]
4
[13]
Aconitate hydratase
[14]
Solanum tuberosum
[80] array · 15 items
[0]
79
[1]
gi|224119508
[2]
Q9SYG7
[3]
CL12585.Contig1_All
[4]
2.76
[5]
[6]
2.47
[7]
11.80
[8]
[9]
15.90
[10]
3
[11]
[12]
1
[13]
Aldehyde dehydrogenase family 7 member B4
[14]
Arabidopsis thaliana
[81] array · 15 items
[0]
80
[1]
gi|225438980
[2]
O64816
[3]
CL136.Contig4_All
[4]
0.37
[5]
[6]
1.44
[7]
15.20
[8]
[9]
27.50
[10]
1
[11]
[12]
1
[13]
Casein kinase II subunit alpha
[14]
Arabidopsis thaliana
[82] array · 15 items
[0]
81
[1]
gi|224056853
[2]
P46256
[3]
Unigene21704_All
[4]
6.08
[5]
[6]
5.67
[7]
31.00
[8]
[9]
36.80
[10]
8
[11]
[12]
10
[13]
Fructose-bisphosphate aldolase
[14]
Pisum sativum
[83] array · 15 items
[0]
82
[1]
gi|6563322
[2]
O04266
[3]
Unigene25085_All
[4]
2.04
[5]
[6]
2.00
[7]
39.40
[8]
[9]
37.30
[10]
6
[11]
[12]
6
[13]
GTP-binding protein SAR1A
[14]
Brassica campestris
[84] array · 15 items
[0]
83
[1]
gi|224113157
[2]
O81832
[3]
CL3993.Contig2_All
[4]
2.01
[5]
[6]
2.00
[7]
12.80
[8]
[9]
13.90
[10]
2
[11]
[12]
2
[13]
G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290
[14]
Arabidopsis thaliana
[85] array · 15 items
[0]
84
[1]
gi|225435578
[2]
Q39202
[3]
CL16541.Contig3_All
[4]
2.53
[5]
[6]
2.29
[7]
16.80
[8]
[9]
17.30
[10]
2
[11]
[12]
2
[13]
G-type lectin S-receptor-like serine/threonine-protein kinase RLK1
[14]
Arabidopsis thaliana
[86] array · 15 items
[0]
85
[1]
gi|406870037
[2]
P09189
[3]
CL2270.Contig2_All
[4]
2.78
[5]
[6]
3.55
[7]
76.20
[8]
[9]
78.10
[10]
5
[11]
[12]
8
[13]
Heat shock cognate 70 kDa protein
[14]
Petunia hybrida
[87] array · 15 items
[0]
86
[1]
gi|1708314
[2]
P51819
[3]
CL1535.Contig1_All
[4]
1.79
[5]
[6]
5.80
[7]
47.20
[8]
[9]
41.60
[10]
24
[11]
[12]
29
[13]
Heat shock protein 83
[14]
Ipomoea nil
[88] array · 15 items
[0]
87
[1]
gi|359493983
[2]
C0LGN2
[3]
Unigene56808_All
[4]
5.42
[5]
[6]
2.00
[7]
18.20
[8]
[9]
19.20
[10]
3
[11]
[12]
1
[13]
Leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840
[14]
Arabidopsis thaliana
[89] array · 15 items
[0]
88
[1]
gi|225447810
[2]
C0LGH2
[3]
CL11120.Contig8_All
[4]
2.53
[5]
[6]
2.00
[7]
24.50
[8]
[9]
25.20
[10]
1
[11]
[12]
1
[13]
LRR receptor-like serine/threonine-protein kinase At1g56130
[14]
Arabidopsis thaliana
[90] array · 15 items
[0]
89
[1]
gi|255571730
[2]
C0LGT6
[3]
CL11164.Contig3_All
[4]
0.92
[5]
[6]
6.30
[7]
26.80
[8]
[9]
23.60
[10]
1
[11]
[12]
3
[13]
LRR receptor-like serine/threonine-protein kinase EFR
[14]
Arabidopsis thaliana
[91] array · 15 items
[0]
90
[1]
gi|255546773
[2]
P98204
[3]
CL587.Contig1_All
[4]
2.00
[5]
[6]
0.48
[7]
12.80
[8]
[9]
18.50
[10]
1
[11]
[12]
1
[13]
Phospholipid-transporting ATPase 1
[14]
Arabidopsis thaliana
[92] array · 15 items
[0]
91
[1]
gi|224095202
[2]
Q9C660
[3]
Unigene8986_All
[4]
2.00
[5]
[6]
2.00
[7]
18.90
[8]
[9]
23.00
[10]
1
[11]
[12]
1
[13]
Proline-rich receptor-like protein kinase PERK10
[14]
Arabidopsis thaliana
[93] array · 15 items
[0]
92
[1]
gi|356526137
[2]
Q9LK03
[3]
CL14215.Contig2_All
[4]
2.00
[5]
[6]
2.00
[7]
26.50
[8]
[9]
20.00
[10]
1
[11]
[12]
1
[13]
Proline-rich receptor-like protein kinase PERK2
[14]
Arabidopsis thaliana
[94] array · 15 items
[0]
93
[1]
gi|302783030
[2]
Q67UF5
[3]
CL3927.Contig4_All
[4]
3.39
[5]
[6]
2.00
[7]
27.70
[8]
[9]
28.40
[10]
3
[11]
[12]
4
[13]
Protein disulfide isomerase-like 2–3
[14]
Oryza sativa subsp. japonica
[95] array · 15 items
[0]
94
[1]
gi|296088320
[2]
Q35638
[3]
Unigene54779_All
[4]
1.52
[5]
[6]
1.17
[7]
29.00
[8]
[9]
21.40
[10]
1
[11]
[12]
1
[13]
Rac-like GTP-binding protein RHO1
[14]
Pisum sativum
[96] array · 15 items
[0]
95
[1]
gi|359479658
[2]
[3]
CL6981.Contig1_All
[4]
2.51
[5]
[6]
4.04
[7]
23.10
[8]
[9]
20.90
[10]
2
[11]
[12]
2
[13]
Serine/threonine-protein kinase BUD32 homolog
[14]
Vitis vinifera
[97] array · 15 items
[0]
96
[1]
gi|386870491
[2]
P11796
[3]
Unigene31392_All
[4]
4.00
[5]
[6]
6.00
[7]
48.70
[8]
[9]
37.60
[10]
3
[11]
[12]
5
[13]
Superoxide dismutase [Mn]
[14]
Nicotiana plumbaginifolia
[98] array · 15 items
[0]
97
[1]
gi|359496003
[2]
[3]
CL13681.Contig2_All
[4]
1.00
[5]
[6]
1.40
[7]
7.00
[8]
[9]
24.70
[10]
1
[11]
[12]
1
[13]
Transaldolase-like
[14]
Vitis vinifera
[99] array · 15 items
[0]
98
[1]
gi|224113019
[2]
O82702
[3]
Unigene35531_All
[4]
1.55
[5]
[6]
2.09
[7]
67.50
[8]
[9]
48.10
[10]
12
[11]
[12]
9
[13]
V-type proton ATPase subunit G 1
[14]
Nicotiana tabacum
[100] array · 15 items
[0]
99
[1]
gi|44917147
[2]
O49996
[3]
Unigene34923_All
[4]
[5]
2.00
[6]
6.00
[7]
[8]
45.20
[9]
62.10
[10]
[11]
3
[12]
10
[13]
14-3-3-like protein D
[14]
Nicotiana tabacum
[101] array · 15 items
[0]
100
[1]
gi|225465653
[2]
[3]
CL3375.Contig1_All
[4]
[5]
1.80
[6]
1.22
[7]
[8]
30.60
[9]
9.60
[10]
[11]
1
[12]
1
[13]
26S proteasome non-ATPase regulatory subunit 1
[14]
Vitis vinifera
[102] array · 15 items
[0]
101
[1]
gi|225451255
[2]
[3]
Unigene49648_All
[4]
[5]
2.02
[6]
4.00
[7]
[8]
23.30
[9]
52.40
[10]
[11]
1
[12]
2
[13]
26S proteasome non-ATPase regulatory subunit 11 isoform 2
[14]
Vitis vinifera
[103] array · 15 items
[0]
102
[1]
gi|225427157
[2]
Q8LPK2
[3]
CL12866.Contig4_All
[4]
[5]
2.92
[6]
2.01
[7]
[8]
12.80
[9]
19.40
[10]
[11]
2
[12]
1
[13]
ABC transporter B family member 2
[14]
Arabidopsis thaliana
[104] array · 15 items
[0]
103
[1]
gi|296085461
[2]
Q8LPJ4
[3]
CL6385.Contig3_All
[4]
[5]
2.93
[6]
6.88
[7]
[8]
15.00
[9]
22.90
[10]
[11]
4
[12]
4
[13]
ABC transporter E family member 2
[14]
Arabidopsis thaliana
[105] array · 15 items
[0]
104
[1]
gi|2493046
[2]
Q40089
[3]
CL7437.Contig3_All
[4]
[5]
10.51
[6]
7.86
[7]
[8]
56.90
[9]
53.40
[10]
[11]
9
[12]
7
[13]
ATP synthase subunit delta'
[14]
Ipomoea batatas
[106] array · 15 items
[0]
105
[1]
gi|267631890
[2]
P28582
[3]
Unigene22237_All
[4]
[5]
2.88
[6]
8.71
[7]
[8]
28.90
[9]
28.90
[10]
[11]
4
[12]
6
[13]
Calcium-dependent protein kinase
[14]
Daucus carota
[107] array · 15 items
[0]
106
[1]
gi|11131745
[2]
P93508
[3]
Unigene55350_All
[4]
[5]
0.54
[6]
1.17
[7]
[8]
18.30
[9]
8.70
[10]
[11]
1
[12]
1
[13]
Calreticulin
[14]
Ricinus communis
[108] array · 15 items
[0]
107
[1]
gi|255566201
[2]
[3]
CL6055.Contig2_All
[4]
[5]
3.95
[6]
3.92
[7]
[8]
34.30
[9]
40.70
[10]
[11]
2
[12]
2
[13]
Co-chaperone protein HscB
[14]
Ricinus communis
[109] array · 15 items
[0]
108
[1]
gi|225462922
[2]
Q8W207
[3]
CL6827.Contig1_All
[4]
[5]
1.23
[6]
2.00
[7]
[8]
12.10
[9]
23.20
[10]
[11]
1
[12]
2
[13]
COP9 signalosome complex subunit 2
[14]
Arabidopsis thaliana
[110] array · 15 items
[0]
109
[1]
gi|225430043
[2]
Q08298
[3]
CL6583.Contig2_All
[4]
[5]
6.00
[6]
4.00
[7]
[8]
33.60
[9]
15.20
[10]
[11]
3
[12]
4
[13]
Dehydration-responsive protein RD22
[14]
Arabidopsis thaliana
[111] array · 15 items
[0]
110
[1]
gi|359477103
[2]
P22242
[3]
Unigene33129_All
[4]
[5]
8.04
[6]
5.58
[7]
[8]
19.70
[9]
37.50
[10]
[11]
4
[12]
3
[13]
Desiccation-related protein PCC13-62
[14]
Craterostigma plantagineum
[112] array · 15 items
[0]
111
[1]
gi|224120498
[2]
P21616
[3]
CL3527.Contig4_All
[4]
[5]
2.00
[6]
4.00
[7]
[8]
56.90
[9]
55.60
[10]
[11]
1
[12]
2
[13]
Pyrophosphate-energized vacuolar membrane proton pump
[14]
Vigna radiata var. radiata
[113] array · 15 items
[0]
112
[1]
gi|255562954
[2]
Q2MHE4
[3]
Unigene13016_All
[4]
[5]
3.03
[6]
7.85
[7]
[8]
13.30
[9]
22.20
[10]
[11]
1
[12]
4
[13]
Serine/threonine-protein kinase HT1
[14]
Arabidopsis thaliana
[114] array · 15 items
[0]
113
[1]
gi|225580057
[2]
Q9XIC7
[3]
CL10222.Contig1_All
[4]
[5]
1.66
[6]
1.00
[7]
[8]
16.50
[9]
25.90
[10]
[11]
1
[12]
2
[13]
Somatic embryogenesis receptor kinase 2
[14]
Arabidopsis thaliana
[115] array · 15 items
[0]
114
[1]
gi|75326539
[2]
Q75VR1
[3]
CL1554.Contig12_All
[4]
[5]
2.74
[6]
1.33
[7]
[8]
10.30
[9]
15.30
[10]
[11]
2
[12]
1
[13]
Two pore calcium channel protein 1A
[14]
Nicotiana tabacum
[116] array · 15 items
[0]
115
[1]
gi|148907059
[2]
Q9LHA4
[3]
CL3237.Contig1_All
[4]
[5]
7.19
[6]
1.74
[7]
[8]
20.50
[9]
25.90
[10]
[11]
6
[12]
4
[13]
V-type proton ATPase subunit d2
[14]
Arabidopsis thaliana
row_count
117
column_count
15
numeric_cells
1347
header_rows
2
locator
section[5]/table-wrap[2]#pone.0133386.t002
gaps array · 2 items
[0]
asset:data:geo:PXD000771 not downloaded
[1]
asset:data:geo:PXD000771 licence not read
analysis object · 4 fields
state
partial
methods array · 1 item
[0] object · 10 fields
id
method-1
family
null
specific
null
label
False discovery rate (FDR)
dsl_operations array · 0 items
missing_operations array · 0 items
expressible
null
parameters object · 0 fields
data_shapes array · 0 items
evidence object · 3 fields
score
1
band
verbatim
quote
Identified proteins for each biological replicate were selected based on a false discovery rate (FDR) of < 1%.
targets array · 0 items
gaps array · 1 item
[0]
method.reader_named_unmapped
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
availability_state
owned
tier_unlocked
R1
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
blocked
tier
R4
blocking_axis
method
blocked_on
method:not_determinable
axes object · 3 fields
method object · 5 fields
tier
R4
expressible
false
required_operations array · 0 items
missing_operations array · 0 items
basis
The reader quoted the method the paper names (False discovery rate (FDR)), but the corpus's method extractor could not map it onto a DSL operation, so the method is published but not expressible.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 1 item
[0]
PXD000771
resolved_accessions array · 1 item
[0]
PXD000771
statements array · 1 item
[0]
The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository with the dataset identifier PXD000771.
basis
The paper names PXD000771 in ProteomeXchange Consortium and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 0 items
assets array · 4 items
[0]
source:pmid:26193361
[1]
data:geo:PXD000771
[2]
asset:table:pmid:26193361:1
[3]
asset:table:pmid:26193361:2
steps array · 1 item
[0]
run_analysis
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:PXD000771
gaps array · 1 item
[0]
method:not_determinable
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-10-31T18:24:13Z
independence
same_provider
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
8
usage object · 3 fields
prompt_tokens
76637
completion_tokens
2781
cached_tokens
1544
human_critique
null
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:26193361
type
paper
label
pmid:26193361
[1] object · 3 fields
id
source:pmid:26193361
type
manuscript
label
PMID 26193361 full text
[2] object · 3 fields
id
data:geo:PXD000771
type
dataset
label
GEO PXD000771
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:26193361
type
paper
label
pmid:26193361
[1] object · 3 fields
id
source:pmid:26193361
type
manuscript
label
PMID 26193361 full text
[2] object · 3 fields
id
data:geo:PXD000771
type
dataset
label
GEO PXD000771
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-26193361
type
extraction
used array · 1 item
[0]
source:pmid:26193361
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-PXD000771
type
accession_resolution
used array · 1 item
[0]
data:geo:PXD000771
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:26193361
parent_hash
sha256:e9d897ce92615a7c0cf132dbb57d04d808cd9fc405f96ce0702699313bfc4124
fork_of
null
generation
5
gaps array · 7 items
[0]
asset:data:geo:PXD000771 licence not read
[1]
asset:data:geo:PXD000771 not downloaded
[2]
execution.not_run
[3]
method.reader_named_unmapped
[4]
review.human_critique
[5]
review.independent_reader
[6]
review.machine_critique
assays array · 1 item
[0] object · 11 fields
role
data_generation
definition_id
mass_spectrometry
definition_version
99e1195c7d6f
definition_digest
null
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.99
evidence array · 4 items
[0]
Proteomic Characterisation of the Salt Gland-Enriched
[1]
s. This paper reports for the first time the proteomic analysis of salt gland-enriched tissues of a
[2]
n mechanisms in salt glands, we used shotgun proteomics to compare the protein profiles of salt glan
[3]
ounds in the samples. Sample preparation and LC-MS/MS analysis Each sample (300μg) was reduced by
order_basis
paper_text_order:0
id
assay:1
Complete file 
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:26193361", "kind": "science-record", "revision": 6, "content_hash": "sha256:4d707eb912a57d3a30feb2f7193fa317221a59fbeda969b9583da7fd2c3d4e19", "created_at": "2026-11-01T15:40:09Z", "updated_at": "2026-11-01T21:20:01Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Proteomic Characterisation of the Salt Gland-Enriched Tissues of the Mangrove Tree Species Avicennia officinalis.", "doi": "10.1371/journal.pone.0133386", "pmid": "26193361", "authors": ["Wee-Kee Tan", "Teck-Kwang Lim", "Chiang-Shiong Loh", "Prakash Kumar", "Qingsong Lin"], "journal": "PloS one", "year": 2015, "abstract": "Plant salt glands are nature's desalination devices that harbour potentially useful information pertaining to salt and water transport during secretion. As part of the program toward deciphering secretion mechanisms in salt glands, we used shotgun proteomics to compare the protein profiles of salt gland-enriched (isolated epidermal peels) and salt gland-deprived (mesophyll) tissues of the mangrove species Avicennia officinalis. The purpose of the work is to identify proteins that are present in the salt gland-enriched tissues. An average of 2189 and 977 proteins were identified from the epidermal peel and mesophyll tissues, respectively. Among these, 2188 proteins were identified in salt gland-enriched tissues and a total of 1032 selected proteins were categorized by Gene Ontology (GO) analysis. This paper reports for the first time the proteomic analysis of salt gland-enriched tissues of a mangrove tree species. Candidate proteins that may play a role in the desalination process of the mangrove salt glands and their potential localization were identified. Information obtained from this study paves the way for future proteomic research aiming at elucidating the molecular mechanism underlying secretion in plant salt glands. The data have been deposited to the ProteomeXchange with identifier PXD000771.", "claims": [{"id": "claim-method", "statement": "Identified proteins for each biological replicate were selected based on a false discovery rate (FDR) of < 1%.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:26193361", "locator": "sections[4] \"Sample preparation and LC-MS/MS analysis\" paragraph 5", "quote": "Identified proteins for each biological replicate were selected based on a false discovery rate (FDR) of < 1%."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository with the dataset identifier PXD000771.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:26193361", "locator": "sections[10] \"Data Availability\" paragraph 2", "quote": "The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository with the dataset identifier PXD000771."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": "The study used nwCompare to identify proteins found in salt gland-enriched epidermal peels but not mesophyll, yielding 2,188 salt gland-enriched proteins, with the underlying proteomics data deposited in ProteomeXchange under PXD000771.", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:26193361"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:PXD000771"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:PXD000771"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:26193361", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1371/journal.pone.0133386", "sha256": "sha256:6157b9b36a01a97174d03e47ab847749a08580c547cee7a5c06e40504a2660f5", "bytes": 36754, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.1371/journal.pone.0133386", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC4508094", "source": "europe_pmc_fulltext", "coverage": "whole_body", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:PXD000771", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=PXD000771", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "PXD000771", "version": null, "note": "The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository with the dataset identifier PXD000771.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository with the dataset identifier PXD000771.", "access_statement_kind": "data_availability_statement", "sample_accessions": [], "sample_count": null, "group_sizes": null, "group_sizes_basis": null, "platform": null, "taxon": null, "title": "Proteomic characterisation of the salt gland-enriched tissues of the mangrove tree species Avicennia officinalis", "resolution_checked_at": "2026-10-31T18:35:55Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "asset:table:pmid:26193361:1", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:4a047fb0a98584f74f99587cbaf77672a9448f0ca1caa11fc275c60f7671fc41", "bytes": 400, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[5]/table-wrap[1]#pone.0133386.t001", "version": null, "note": "Number of proteins identified from adaxial (upper) epidermal peels and mesophyll tissues of the leaves of A. officinalis.", "structure": {"pmcid": "PMC4508094", "section_index": 5, "section_title": "Results", "row_count": 3, "column_count": 2}, "table": {"label": "Table 1", "caption": "Number of proteins identified from adaxial (upper) epidermal peels and mesophyll tissues of the leaves of A. officinalis.", "rows": [["", "Average no. of proteins identified (±SE)"], ["Epidermal peels", "2189 ± 128"], ["Mesophyll tissues", "977 ± 150"]], "row_count": 3, "column_count": 2, "numeric_cells": 2, "header_rows": 1, "locator": "section[5]/table-wrap[1]#pone.0133386.t001"}}, {"id": "asset:table:pmid:26193361:2", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:7ac2f9e3d0309441a3b7b233a281577955decbb1d67e2a2a5961fd407365f3c5", "bytes": 19687, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[5]/table-wrap[2]#pone.0133386.t002", "version": null, "note": "Selected list of proteins identified from salt gland-enriched epidermal tissues of A. officinalis.These proteins are identified in the epidermal tissues but not in the mesophyll tissues of A. officinalis and only those that are present in two out of the three biological replicates are selected for further anlaysis. The full list of proteins is presented in S8 Table.", "structure": {"pmcid": "PMC4508094", "section_index": 5, "section_title": "Results", "row_count": 117, "column_count": 15}, "table": {"label": "Table 2", "caption": "Selected list of proteins identified from salt gland-enriched epidermal tissues of A. officinalis.These proteins are identified in the epidermal tissues but not in the mesophyll tissues of A. officinalis and only those that are present in two out of the three biological replicates are selected for further anlaysis. The full list of proteins is presented in S8 Table.", "rows": [["", "", "", "", "Unused ProtScore*", "% Coverage #", "Peptides (95%) ^", "", ""], ["No.", "gi Acession No.", "Swiss-Prot ID", "Contig No.", "T1", "T2", "T3", "T1", "T2", "T3", "T1", "T2", "T3", "Protein Description", "Species"], ["1", "gi|3912949", "O49996", "CL15843.Contig3_All", "2.27", "8.00", "12.21", "42.90", "34.30", "52.70", "6", "5", "9", "14-3-3-like protein D", "Nicotiana tabacum"], ["2", "gi|224136700", "Q9LT08", "CL5021.Contig4_All", "7.70", "3.95", "4.36", "32.10", "33.00", "22.10", "6", "4", "3", "26S proteasome non-ATPase regulatory subunit 14", "Arabidopsis thaliana"], ["3", "gi|3914467", "P93768", "Unigene16875_All", "2.00", "2.00", "0.36", "30.30", "30.30", "30.30", "1", "1", "1", "26S proteasome non-ATPase regulatory subunit 3", "Nicotiana tabacum"], ["4", "gi|350538091", "O04059", "CL2261.Contig1_All", "7.52", "11.08", "6.18", "22.30", "19.20", "20.80", "5", "6", "3", "3,4-dihydroxy-2-butanone kinase", "Solanum lycopersicum"], ["5", "gi|255584390", "Q9LVM1", "CL12689.Contig2_All", "0.91", "2.66", "2.00", "8.90", "13.80", "15.40", "2", "1", "1", "ABC transporter B family member 25", "Arabidopsis thaliana"], ["6", "gi|255552969", "Q9M1H3", "Unigene32800_All", "4.88", "5.62", "2.01", "18.40", "17.60", "18.20", "4", "3", "1", "ABC transporter F family member 4", "Arabidopsis thaliana"], ["7", "gi|296090419", "Q7PC87", "CL4209.Contig1_All", "4.00", "2.01", "21.16", "44.40", "46.80", "53.60", "8", "10", "13", "ABC transporter G family member 34", "Arabidopsis thaliana"], ["8", "gi|359484370", "Q8RXE7", "Unigene4379_All", "4.83", "2.00", "2.18", "19.20", "15.10", "13.60", "3", "1", "1", "ADP-ribosylation factor GTPase-activating protein AGD14", "Arabidopsis thaliana"], ["9", "gi|255546541", "Q56YU0", "CL13289.Contig1_All", "3.08", "4.09", "6.02", "21.10", "25.90", "19.70", "3", "3", "3", "Aldehyde dehydrogenase family 2 member C4", "Arabidopsis thaliana"], ["10", "gi|297823651", "Q0PGJ6", "CL5791.Contig3_All", "4.87", "8.40", "9.74", "39.20", "47.70", "52.30", "6", "7", "7", "Aldo-keto reductase family 4 member C9", "Arabidopsis thaliana"], ["11", "gi|50345961", "Q7XSQ9", "CL16514.Contig4_All", "4.00", "4.01", "6.03", "39.50", "43.00", "36.00", "12", "12", "22", "Aquaporin PIP1-2", "Oryza sativa subsp. japonica"], ["12", "gi|17940742", "Q7XLR1", "Unigene32737_All", "4.00", "2.09", "2.00", "29.60", "33.70", "27.60", "7", "5", "4", "Aquaporin PIP2-6", "Oryza sativa subsp. japonica"], ["13", "gi|255541428", "", "CL8427.Contig3_All", "4.09", "4.00", "2.00", "16.40", "11.60", "6.20", "4", "2", "1", "Arsenical pump-driving atpase", "Ricinus communis"], ["14", "gi|2493046", "Q40089", "CL7437.Contig2_All", "6.89", "5.65", "12.70", "26.10", "46.80", "53.70", "4", "5", "9", "ATP synthase subunit delta'", "Ipomoea batatas"], ["15", "gi|225454791", "", "Unigene6969_All", "3.38", "4.00", "1.54", "47.10", "40.20", "14.90", "2", "2", "1", "ATPase family AAA domain-containing protein 3-B", "Vitis vinifera"], ["16", "gi|224145672", "P28583", "CL274.Contig2_All", "2.39", "1.27", "1.27", "15.50", "22.00", "17.40", "1", "1", "1", "Calcium-dependent protein kinase SK5", "Glycine max"], ["17", "gi|225466204", "Q9CAL3", "CL14803.Contig3_All", "4.96", "4.87", "8.92", "18.60", "22.90", "23.10", "3", "3", "5", "Cysteine-rich receptor-like protein kinase 2", "Arabidopsis thaliana"], ["18", "gi|225452304", "Q93ZC9", "Unigene4267_All", "2.33", "3.39", "4.71", "12.10", "11.20", "34.00", "1", "2", "3", "Glucuronokinase 1", "Arabidopsis thaliana"], ["19", "gi|225445585", "", "CL12018.Contig2_All", "3.12", "2.33", "2.04", "16.20", "15.80", "12.00", "3", "1", "1", "GTPase-activating protein gyp7-like", "Vitis vinifera"], ["20", "gi|351721140", "O64477", "Unigene30402_All", "2.03", "2.92", "3.18", "10.10", "14.00", "11.90", "1", "2", "2", "G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130", "Arabidopsis thaliana"], ["21", "gi|296081939", "F4JMJ1", "CL2876.Contig1_All", "13.17", "7.78", "18.76", "40.10", "32.60", "41.30", "11", "7", "10", "Heat shock 70 kDa protein 17", "Arabidopsis thaliana"], ["22", "gi|224099789", "Q9SKY8", "CL2714.Contig2_All", "4.14", "2.01", "2.44", "17.60", "4.20", "9.10", "2", "1", "1", "Heat shock 70 kDa protein 8", "Arabidopsis thaliana"], ["23", "gi|45331281", "P09189", "CL2270.Contig3_All", "6.03", "4.34", "8.12", "56.00", "52.10", "59.00", "32", "33", "41", "Heat shock cognate 70 kDa protein", "Petunia hybrida"], ["24", "gi|240255879", "", "CL2610.Contig2_All", "4.06", "4.00", "6.00", "44.80", "44.80", "63.20", "2", "2", "3", "Heat shock factor binding protein", "Arabidopsis thaliana"], ["25", "gi|356540381", "Q43468", "CL13990.Contig2_All", "2.09", "6.00", "2.03", "53.40", "52.30", "40.40", "4", "4", "3", "Heat shock protein STI", "Glycine max"], ["26", "gi|359473854", "", "Unigene32812_All", "2.14", "2.09", "4.00", "28.70", "25.30", "14.30", "2", "1", "2", "hsp70 nucleotide exchange factor FES1", "Vitis vinifera"], ["27", "gi|297793865", "Q9FM19", "Unigene2776_All", "3.72", "3.91", "9.97", "32.20", "40.10", "40.80", "6", "7", "11", "Hypersensitive-induced response protein 1", "Arabidopsis thaliana"], ["28", "gi|255576916", "O48788", "Unigene6256_All", "3.02", "2.41", "2.00", "27.50", "27.50", "24.40", "4", "4", "2", "Inactive receptor kinase At2g26730", "Arabidopsis thaliana"], ["29", "gi|2208908", "Q96303", "CL8176.Contig2_All", "12.13", "12.15", "4.64", "18.10", "17.50", "21.40", "9", "8", "7", "Inorganic phosphate transporter 1–4", "Arabidopsis thaliana"], ["30", "gi|357440961", "Q8GYF4", "CL8176.Contig4_All", "6.32", "6.68", "10.07", "19.80", "18.50", "22.20", "7", "6", "6", "Inorganic phosphate transporter 1–5", "Arabidopsis thaliana"], ["31", "gi|297740564", "C0LGE0", "CL3330.Contig3_All", "20.94", "18.55", "25.32", "29.50", "26.70", "31.40", "13", "12", "17", "LRR receptor-like serine/threonine-protein kinase At1g07650", "Arabidopsis thaliana"], ["32", "gi|224112549", "C0LGG9", "Unigene4496_All", "2.01", "2.05", "2.00", "22.00", "26.00", "17.10", "2", "2", "1", "LRR receptor-like serine/threonine-protein kinase At1g53440", "Arabidopsis thaliana"], ["33", "gi|359485959", "C0LGH3", "CL2732.Contig3_All", "4.65", "7.56", "5.09", "25.50", "15.20", "18.80", "4", "4", "4", "LRR receptor-like serine/threonine-protein kinase At1g56140", "Arabidopsis thaliana"], ["34", "gi|359493576", "C0LGQ5", "Unigene30432_All", "6.19", "5.03", "11.29", "31.70", "27.00", "34.60", "5", "4", "7", "LRR receptor-like serine/threonine-protein kinase GSO1", "Arabidopsis thaliana"], ["35", "gi|225444063", "", "CL8211.Contig2_All", "12.44", "7.93", "11.21", "33.80", "29.40", "37.30", "7", "4", "8", "obg-like ATPase 1", "Vitis vinifera"], ["36", "gi|13785471", "Q9T074", "CL2927.Contig4_All", "22.73", "13.53", "24.38", "36.50", "26.90", "40.80", "17", "8", "16", "Phosphoenolpyruvate carboxykinase [ATP]", "Arabidopsis thaliana"], ["37", "gi|225442595", "Q66GQ3", "CL2133.Contig8_All", "9.92", "12.24", "17.14", "33.00", "34.90", "32.50", "5", "8", "11", "Protein disulfide isomerase-like 1–6", "Arabidopsis thaliana"], ["38", "gi|225459342", "Q69SA9", "CL4543.Contig4_All", "0.86", "2.84", "2.29", "22.20", "29.60", "22.20", "1", "2", "2", "Protein disulfide isomerase-like 5–4", "Oryza sativa subsp. japonica"], ["39", "gi|359494074", "", "CL2740.Contig3_All", "2.01", "6.22", "4.06", "39.20", "60.80", "46.00", "6", "4", "6", "Protein grpE-like", "Vitis vinifera"], ["40", "gi|45433315", "P31569", "CL4418.Contig4_All", "4.00", "1.76", "3.06", "29.60", "30.10", "23.60", "6", "5", "6", "Protein ycf2", "Oenothera villaricae"], ["41", "gi|357445105", "B9DFG5", "Unigene196_All", "2.00", "6.02", "7.52", "22.80", "20.10", "41.40", "6", "4", "4", "PTI1-like tyrosine-protein kinase 3", "Arabidopsis thaliana"], ["42", "gi|242064260", "Q06572", "CL6187.Contig3_All", "4.00", "4.01", "2.00", "10.10", "32.40", "26.30", "2", "3", "1", "Pyrophosphate-energized vacuolar membrane proton pump", "Hordeum vulgare"], ["43", "gi|356526237", "P31414", "CL3527.Contig3_All", "2.01", "2.00", "4.35", "11.00", "39.70", "37.00", "2", "2", "4", "Pyrophosphate-energized vacuolar membrane proton pump 1", "Arabidopsis thaliana"], ["44", "gi|359477316", "Q42736", "CL384.Contig14_All", "4.08", "10.48", "2.04", "18.90", "21.00", "21.80", "6", "6", "6", "Pyruvate, phosphate dikinase", "Flaveria pringlei"], ["45", "gi|258678027", "Q9M651", "CL13915.Contig4_All", "1.19", "2.01", "2.00", "25.60", "31.80", "18.50", "1", "1", "1", "RAN GTPase-activating protein 2", "Arabidopsis thaliana"], ["46", "gi|7672732", "P43298", "CL15187.Contig2_All", "3.87", "4.05", "6.86", "15.10", "17.60", "12.40", "3", "2", "4", "Receptor protein kinase TMK1", "Arabidopsis thaliana"], ["47", "gi|224087891", "Q9SCZ4", "CL2320.Contig9_All", "2.00", "1.42", "2.00", "8.20", "9.50", "6.70", "1", "1", "1", "Receptor-like protein kinase FERONIA", "Arabidopsis thaliana"], ["48", "gi|225427230", "Q944A7", "CL5141.Contig1_All", "4.19", "5.46", "1.57", "28.10", "22.00", "21.30", "4", "3", "1", "Serine/threonine-protein kinase At4g35230", "Arabidopsis thaliana"], ["49", "gi|225426412", "Q9FHD7", "CL7376.Contig1_All", "2.59", "7.34", "8.62", "11.30", "25.50", "25.70", "3", "4", "5", "Serine/threonine-protein kinase At5g41260", "Arabidopsis thaliana"], ["50", "gi|145327199", "Q9CAR3", "CL8777.Contig2_All", "2.73", "2.08", "2.00", "13.80", "12.90", "18.40", "2", "1", "1", "SNF1-related protein kinase regulatory subunit gamma-1-like", "Arabidopsis thaliana"], ["51", "gi|194696644", "Q84TI7", "Unigene26174_All", "2.57", "2.20", "2.51", "24.30", "38.60", "37.10", "1", "1", "1", "Sodium transporter HKT1", "Arabidopsis thaliana"], ["52", "gi|359495505", "Q9LRB0", "CL315.Contig4_All", "2.00", "0.74", "2.00", "11.60", "17.60", "6.80", "1", "1", "1", "Sphingoid long-chain bases kinase 1", "Arabidopsis thaliana"], ["53", "gi|225443039", "", "CL10751.Contig1_All", "2.00", "2.00", "2.00", "5.20", 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"Arabidopsis thaliana"], ["59", "gi|225432878", "Q0WNY5", "CL3494.Contig3_All", "6.01", "5.30", "5.91", "21.00", "22.10", "20.80", "3", "4", "3", "Wall-associated receptor kinase-like 18", "Arabidopsis thaliana"], ["60", "gi|124221924", "Q9LZM4", "CL6319.Contig3_All", "15.22", "6.29", "8.21", "23.30", "24.50", "28.10", "7", "3", "6", "Wall-associated receptor kinase-like 20", "Arabidopsis thaliana"], ["61", "gi|255569405", "Q8RXN0", "CL4681.Contig3_All", "6.01", "1.81", "", "18.60", "15.70", "", "3", "1", "", "ABC transporter G family member 11", "Arabidopsis thaliana"], ["62", "gi|171854675", "P49608", "CL2995.Contig26_All", "2.00", "2.00", "", "29.80", "14.60", "", "1", "1", "", "Aconitate hydratase", "Cucurbita maxima"], ["63", "gi|18076583", "Q8S9L6", "CL9653.Contig1_All", "2.00", "2.01", "", "9.90", "11.00", "", "1", "1", "", "Cysteine-rich receptor-like protein kinase 29", "Arabidopsis thaliana"], ["64", "gi|225445342", "", "CL13252.Contig2_All", "0.85", "3.64", "", "10.50", 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