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pmid:26484133

Lysophosphatidic acid (LPA) 18:1 transcriptional regulation of primary human gingival fibroblasts.

D Roselyn Cerutis · Michael D Weston · Afolabi O Ogunleye · Timothy P McVaney · Takanari Miyamoto

Genomics data · 2014 doi:10.1016/j.gdata.2014.10.014

Paper

complete

Experiment

complete

Data

partial

Analysis

partial

Execution

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Lysophosphatidic acid (LPA) 18:1 transcriptional regulation of primary human gingival fibroblasts.
doi
10.1016/j.gdata.2014.10.014
pmid
26484133
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D Roselyn Cerutis
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Michael D Weston
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Afolabi O Ogunleye
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Timothy P McVaney
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Takanari Miyamoto
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Genomics data
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2014
abstract
The pleiotropic, bioactive lipid lysophosphatidic acid [(LPA), 1-acyl-sn-glycerol-3-phosphate] exerts critical regulatory actions in physiology and pathophysiology in many systems. It is present in normal bodily fluids, and is elevated in pathology (1). In vivo, "LPA" exists as distinct molecular species, each having a single fatty acid of varying chain length and degree of unsaturation covalently attached to the glycerol backbone via an acyl, alkyl, or alkenyl link. These species differ in affinities for the individual LPA receptors [(LPARs), LPA1-6] and coupling to G proteins (2). However, LPA 18:1 has been and continues to be the most commonly utilized species in reported studies. The actions of "LPA" remain poorly defined in oral biology and pathophysiology. Our laboratory has addressed this knowledge gap by studying in vitro the actions of the major human salivary LPA species [18:1, 18:0, and 16:0 (3)] in human oral cells (4-7). This includes gingival fibroblasts (GF), which our flow cytometry data from multiple donors found that they express LPA1-5 (6). We have also reported that these species are ten-fold elevated to pharmacologic levels in the saliva and gingival crevicular fluid obtained from patients with moderate-severe periodontitis (8). As the potential of LPA to regulate transcriptional activity had not been examined in the oral system, this study used whole human genome microarray analysis to test the hypothesis that LPA 18:1-treated human GF would show significant changes in gene transcripts relevant to their biology, wound-healing, and inflammatory responses. LPA 18:1 was found to significantly regulate a large, complex set of genes critical to GF biology in these categories and to periodontal disease. The raw data has been deposited at NCBI's GEO database as record GSE57496.
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LPA 18:1 significantly regulated a large, complex set of genes critical to gingival fibroblast biology and periodontal disease; differential expression was identified using Rosetta Resolver® at p ≤ 0.01 and a 2-fold difference threshold, and the raw data are available from NCBI GEO record GSE57496 at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE57496.
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LPA 18:1 was found to significantly regulate a large, complex set of genes critical to GF biology in these categories and to periodontal disease.
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LPA 18:1 significantly regulated a large, complex set of genes critical to gingival fibroblast biology and periodontal disease; differential expression was identified using Rosetta Resolver® at p ≤ 0.01 and a 2-fold difference threshold, and the raw data are available from NCBI GEO record GSE57496 at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE57496.
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Human gingival fibroblasts: control vs. lysophosphatidic acid (LPA 18:1)-treated
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Complete file
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It is present in normal bodily fluids, and is elevated in pathology (1). In vivo, \"LPA\" exists as distinct molecular species, each having a single fatty acid of varying chain length and degree of unsaturation covalently attached to the glycerol backbone via an acyl, alkyl, or alkenyl link. These species differ in affinities for the individual LPA receptors [(LPARs), LPA1-6] and coupling to G proteins (2). However, LPA 18:1 has been and continues to be the most commonly utilized species in reported studies. The actions of \"LPA\" remain poorly defined in oral biology and pathophysiology. Our laboratory has addressed this knowledge gap by studying in vitro the actions of the major human salivary LPA species [18:1, 18:0, and 16:0 (3)] in human oral cells (4-7). This includes gingival fibroblasts (GF), which our flow cytometry data from multiple donors found that they express LPA1-5 (6). We have also reported that these species are ten-fold elevated to pharmacologic levels in the saliva and gingival crevicular fluid obtained from patients with moderate-severe periodontitis (8). As the potential of LPA to regulate transcriptional activity had not been examined in the oral system, this study used whole human genome microarray analysis to test the hypothesis that LPA 18:1-treated human GF would show significant changes in gene transcripts relevant to their biology, wound-healing, and inflammatory responses. LPA 18:1 was found to significantly regulate a large, complex set of genes critical to GF biology in these categories and to periodontal disease. 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