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pmid:26484261

Microarray analysis of Neosartorya fischeri using different carbon sources, petroleum asphaltenes and glucose-peptone.

Edna L Hernández-López · Shamayim T Ramírez-Puebla · Rafael Vazquez-Duhalt

Genomics data · 2015 doi:10.1016/j.gdata.2015.06.013

Paper

complete

Experiment

complete

Data

partial

Analysis

partial

Execution

absent

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title
Microarray analysis of Neosartorya fischeri using different carbon sources, petroleum asphaltenes and glucose-peptone.
doi
10.1016/j.gdata.2015.06.013
pmid
26484261
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Edna L Hernández-López
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Shamayim T Ramírez-Puebla
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Rafael Vazquez-Duhalt
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Genomics data
year
2015
abstract
Asphaltenes are considered as the most recalcitrant petroleum fraction and represent a big problem for the recovery, separation and processing of heavy oils and bitumens. Neosartorya fischeri is a saprophytic fungus that is able to grow using asphaltenes as the sole carbon source [1]. We performed transcription profiling using a custom designed microarray with the complete genome from N. fischeri NRRL 181 in order to identify genes related to the transformation of asphaltenes [1]. Data analysis was performed using the genArise software. Results showed that 287 genes were up-regulated and 118 were down-regulated. Here we describe experimental procedures and methods about our dataset (NCBI GEO accession number GSE68146) and describe the data analysis to identify different expression levels in N. fischeri using this recalcitrant carbon source.
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Neosartorya fischeri Comparative Transcriptome when the fungi uses a differente carbon source, petroleum asphaltenes or glucose-peptona
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Neosartorya fischeri is a saprophytic fungus that is able to grow using asphaltenes as the sole carbon source [1]. We performed transcription profiling using a custom designed microarray with the complete genome from N. fischeri NRRL 181 in order to identify genes related to the transformation of asphaltenes [1]. Data analysis was performed using the genArise software. Results showed that 287 genes were up-regulated and 118 were down-regulated. 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