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pmid:26484292

Microarray expression profile of circular RNAs in human pancreatic ductal adenocarcinoma.

Shibin Qu · Wenjie Song · Xisheng Yang · Jianlin Wang · Ruohan Zhang · Zhuochao Zhang · Hongtao Zhang · Haimin Li

Genomics data · 2015 doi:10.1016/j.gdata.2015.07.017

Paper

complete

Experiment

partial

Data

partial

Analysis

partial

Execution

absent

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title
Microarray expression profile of circular RNAs in human pancreatic ductal adenocarcinoma.
doi
10.1016/j.gdata.2015.07.017
pmid
26484292
authors array · 8 items
[0]
Shibin Qu
[1]
Wenjie Song
[2]
Xisheng Yang
[3]
Jianlin Wang
[4]
Ruohan Zhang
[5]
Zhuochao Zhang
[6]
Hongtao Zhang
[7]
Haimin Li
journal
Genomics data
year
2015
abstract
Pancreatic ductal adenocarcinoma (PDAC) remains a common and deadly cancer. Despite numerous efforts, no reliable biomarker is available for daily clinical practice. Circular RNAs (circRNAs) are an abundant, stable and conserved class of RNA molecules that exhibit tissue/developmental-stage-specific expression (Salzman et al., 2012; Jeck et al., 2013; Memczak et al., 2013). CircRNAs play a crucial role in disease, especially in cancer, and provide new potential diagnostic and therapeutic targets for disease (Hansen et al., 2013; Qu et al., 2015).This research was designed to explore the expression profile of circRNAs in PDAC to serve as new diagnosis and treatment strategies for PDAC. Microarray and sample annotation data were deposited in Gene Expression Omnibus (GEO) under accession number GSE69362.
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CircRNAs differentially expressed between the two groups were conveniently estimated by fold-change filtering and Student's t-test.
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The circRNA expression signatures of PDAC were dysregulated; differentially expressed circRNAs were identified by fold-change filtering and Student's t-test, selecting circRNAs with fold changes ≥ 2.0 and p-values ≤ 0.05. The microarray and sample annotation data are available from GEO under accession number GSE69362.
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We have also revealed that the circRNA expression signatures of PDAC are dysregulated.
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sections[7] "Microarray and quality control" paragraph 2
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CircRNAs differentially expressed between the two groups were conveniently estimated by fold-change filtering and Student's t-test.
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CircRNAs exhibiting fold changes ≥ 2.0 and p-values ≤ 0.05 were selected as significantly differentially expressed circRNAs.
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The circRNA expression signatures of PDAC were dysregulated; differentially expressed circRNAs were identified by fold-change filtering and Student's t-test, selecting circRNAs with fold changes ≥ 2.0 and p-values ≤ 0.05. The microarray and sample annotation data are available from GEO under accession number GSE69362.
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Circular RNA Expression Profile of Pancreatic Ductal Adenocarcinoma Revealed by Microarray.
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