Proteome data of whole saliva which are associated with development of oral mucositis in head and neck cancer patients undergoing radiotherapy.

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Oral mucositis is a common and often treatment-limiting side effect of radiotherapy for head and neck cancer patients. In this dataset, we provide the complete proteome dataset (raw and search files) of the patients at baseline of radiotherapy treatment in patients undergoing radiotherapy analyzed by nano liquid chromatography coupled to mass spectrometry (LC-MS/MS). In the data set, 5323 tryptic peptides were identified which can be assigned to 487 distinct proteins (≥2 peptides). The MS data have been deposited to the ProteomeXchange (\"ProteomeXchange provides globally coordinated proteomics data submission and dissemination\" [1]) via the PRIDE partner repository with the dataset identifier PRIDE: PXD003230. The data are associated with the previously published work, \"Differences in the whole saliva baseline proteome profile associated with development of oral mucositis in head and neck cancer patients undergoing radiotherapy\" [2].", "claims": [{"id": "claim-data-access", "statement": "Data are within this article and deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PRIDE: PXD003230.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:27358911", "locator": "sections[1] \"p\" paragraph 1", "quote": "Data are within this article and deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PRIDE: PXD003230."}], "state": "complete"}, {"id": "claim-target-result", "statement": "The dataset contained 5323 tryptic peptides assigned to 487 distinct proteins (≥2 peptides), no statistical method was reported, and the source data are available through PRIDE under PXD003230.", "kind": "qualitative", "target": null, "evidence": [{"asset": "source:pmid:27358911", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "In the data set, 5323 tryptic peptides were identified which can be assigned to 487 distinct proteins (≥2 peptides)."}, {"asset": "source:pmid:27358911", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "The MS data have been deposited to the ProteomeXchange (“ProteomeXchange provides globally coordinated proteomics data submission and dissemination” [1]) via the PRIDE partner repository with the dataset identifier PRIDE: PXD003230."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "partial", "objective": "The dataset contained 5323 tryptic peptides assigned to 487 distinct proteins (≥2 peptides), no statistical method was reported, and the source data are available through PRIDE under PXD003230.", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:27358911"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "blocked", "blocked_on": "data:accession_absent", "description": "The GEO series accession resolves and its sample accessions are listed. 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