Embryonic lethal abnormal vision proteins and adenine and uridine-rich element mRNAs after global cerebral ischemia and reperfusion in the rat.

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Many previous studies investigated ribosome molecular biology, but mRNA regulatory mechanisms after brain ischemia have been less studied. Here we investigated the embryonic lethal abnormal vision/Hu isoforms HuR, HuB, HuC, and HuD, as well as expression of mRNAs containing adenine and rich uridine elements following global ischemia in rat brain. Proteomics of embryonic lethal abnormal vision immunoprecipitations or polysomes isolated from rat hippocampal CA1 and CA3 from controls or following 10 min ischemia plus 8 h of reperfusion showed distinct sets of mRNA-binding proteins, suggesting differential mRNA regulation in each condition. Notably, HuB, HuC, and HuD were undetectable in NIC CA1. At 8 h reperfusion, polysome-associated mRNAs contained 46.1% of ischemia-upregulated mRNAs containing adenine and rich uridine elements in CA3, but only 18.7% in CA1. Since mRNAs containing adenine and rich uridine elements regulation are important to several cellular stress responses, our results suggest CA1 is disadvantaged compared to CA3 in coping with ischemic stress, and this is expected to be an important contributing factor to CA1 selective vulnerability. (Data are available via ProteomeXchange identifier PXD004078 and GEO Series accession number GSE82146).", "claims": [{"id": "claim-target-result", "statement": "The paper reports that CA1 is disadvantaged compared with CA3 in coping with ischemic stress, suggesting a contribution to CA1 selective vulnerability. It does not specify a statistical method in the provided text. The source data are available through ProteomeXchange identifier PXD004078 and GEO Series accession number GSE82146.", "kind": "qualitative", "target": null, "evidence": [{"asset": "source:pmid:27381823", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "Notably, HuB, HuC, and HuD were undetectable in NIC CA1."}, {"asset": "source:pmid:27381823", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "At 8 h reperfusion, polysome-associated mRNAs contained 46.1% of ischemia-upregulated mRNAs containing adenine and rich uridine elements in CA3, but only 18.7% in CA1."}, {"asset": "source:pmid:27381823", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "Since mRNAs containing adenine and rich uridine elements regulation are important to several cellular stress responses, our results suggest CA1 is disadvantaged compared to CA3 in coping with ischemic stress, and this is expected to be an important contributing factor to CA1 selective vulnerability."}, {"asset": "source:pmid:27381823", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "(Data are available via ProteomeXchange identifier PXD004078 and GEO Series accession number GSE82146)."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "partial", "objective": "The paper reports that CA1 is disadvantaged compared with CA3 in coping with ischemic stress, suggesting a contribution to CA1 selective vulnerability. 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