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pmid:27775574

Proteome and Peptidome of Vipera berus berus Venom.

Aleksandra Bocian · Małgorzata Urbanik · Konrad Hus · Andrzej Łyskowski · Vladimír Petrilla · Zuzana Andrejčáková · Monika Petrillová · Jaroslav Legath

Molecules (Basel, Switzerland) · 2016 doi:10.3390/molecules21101398

Paper

complete

Experiment

complete

Data

partial

Analysis

absent

Execution

absent

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Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
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pmid:27775574
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science-record
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sha256:f51474d231392db648f11787ef3eee0c72147ddf253afdca9764a695a8c8583f
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created_at
2026-11-01T15:40:21Z
updated_at
2026-11-01T18:48:25Z
generator object · 2 fields
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paper object · 10 fields
state
complete
title
Proteome and Peptidome of Vipera berus berus Venom.
doi
10.3390/molecules21101398
pmid
27775574
authors array · 8 items
[0]
Aleksandra Bocian
[1]
Małgorzata Urbanik
[2]
Konrad Hus
[3]
Andrzej Łyskowski
[4]
Vladimír Petrilla
[5]
Zuzana Andrejčáková
[6]
Monika Petrillová
[7]
Jaroslav Legath
journal
Molecules (Basel, Switzerland)
year
2016
abstract
Snake venom is a rich source of peptides and proteins with a wide range of actions. Many of the venom components are currently being tested for their usefulness in the treatment of many diseases ranging from neurological and cardiovascular to cancer. It is also important to constantly search for new proteins and peptides with properties not yet described. The venom of Vipera berus berus has hemolytic, proteolytic and cytotoxic properties, but its exact composition and the factors responsible for these properties are not known. Therefore, an attempt was made to identify proteins and peptides derived from this species venom by using high resolution two-dimensional electrophoresis and MALDI ToF/ToF mass spectrometry. A total of 11 protein classes have been identified mainly proteases but also l-amino acid oxidases, C-type lectin like proteins, cysteine-rich venom proteins and phospholipases A₂ and 4 peptides of molecular weight less than 1500 Da. Most of the identified proteins are responsible for the highly hemotoxic properties of the venom. Presence of venom phospholipases A₂ and l-amino acid oxidases cause moderate neuro-, myo- and cytotoxicity. All successfully identified peptides belong to the bradykinin-potentiating peptides family. The mass spectrometry data are available via ProteomeXchange with identifier PXD004958.
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Sample Availability: Samples are not available from the authors.
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sections[11] "Footnotes" paragraph 2
quote
Sample Availability: Samples are not available from the authors.
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complete
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claim-target-result
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The study identified 11 venom protein classes and four peptides; protein-group abundance was estimated using spot-volume percentages (%Vol) averaged across technical replicates and both isoelectrofocusing ranges, and the mass-spectrometry proteomics data were deposited via PRIDE in ProteomeXchange under identifier PXD004958.
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qualitative
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sections[0] "Abstract" paragraph 1
quote
A total of 11 protein classes have been identified mainly proteases but also l-amino acid oxidases, C-type lectin like proteins, cysteine-rich venom proteins and phospholipases A2 and 4 peptides of molecular weight less than 1500 Da.
[1] object · 3 fields
asset
source:pmid:27775574
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sections[6] "4. Materials and Methods" paragraph 5
quote
Percentage of proteins from different groups has been estimated in Image Master 2D Platinum software using %Vol (a ratio of the volume of a particular spot to the total volume of all spots present in the gel). The calculation has been done for each gel separately. The final result is an average of the spots %Vol determined from all gels including technical repeats as well as the different isoelectrofocusing separation range.
[2] object · 3 fields
asset
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sections[6] "4. Materials and Methods" paragraph 9
quote
The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE [39] partner repository with the dataset identifier PXD004958.
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The study identified 11 venom protein classes and four peptides; protein-group abundance was estimated using spot-volume percentages (%Vol) averaged across technical replicates and both isoelectrofocusing ranges, and the mass-spectrometry proteomics data were deposited via PRIDE in ProteomeXchange under identifier PXD004958.
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title
Proteome and peptidome of Vipera berus berus venom
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Composition of V. berus berus venom proteins.
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3
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2.1. Proteome
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Table 1
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Composition of V. berus berus venom proteins.
rows array · 44 items
[0] array · 7 items
[0]
Spot No. #
[1]
Identified Protein &
[2]
Accession *
[3]
Organism ¥
[4]
Mass (kDa) £
[5]
S ±
[6]
Peptide Sequence ≠
[1] array · 7 items
[0]
1
[1]
Angiotensin- like peptide 2
[2]
ANGT2_BOTJA
[3]
Bothrops jararaca
[4]
1.04
[5]
44
[6]
DRVYIHPF (1046.5816)
[2] array · 7 items
[0]
2
[1]
H3 metalloproteinase precursor 1
[2]
VM1H3_DEIAC
[3]
Vipera ammotydes ammotydes
[4]
70.7
[5]
48
[6]
NPCQIYYTPR (1311.7225)
[3] array · 7 items
[0]
3
[1]
l-amino acid oxidase
[2]
OXLA_BOTPC
[3]
Bothrops pictus
[4]
56.7
[5]
102
[6]
SAGQLYEESLR (1252.6349)
[4] array · 5 items
[0]
OXLA_BOTCO
[1]
Bothrops cotiara
[2]
1.8
[3]
49
[4]
NPLEECFR (1252.6575)
[5] array · 5 items
[0]
OXLA_MACLB
[1]
Macrovipera lebetina
[2]
12.5
[3]
58
[4]
PMF SC 40.2%
[6] array · 5 items
[0]
OXLA_BOTJR
[1]
Bothrops jararacussu
[2]
56.7
[3]
59
[4]
FWEDDGIHGGK (1260.6088)
[7] array · 5 items
[0]
OXLA_VIPBB
[1]
Vipera berus berus
[2]
10.3
[3]
68
[4]
ADDICNPLEECFR (1493.7661)
[8] array · 5 items
[0]
OXLA_BOTJA
[1]
Bothrops jararacussu
[2]
56.5
[3]
50
[4]
HIDDIFAYEK (1137.5991)
[9] array · 5 items
[0]
OXLA_BOTPC
[1]
Bothrops pictus
[2]
56.7
[3]
101
[4]
SAGQLYEESLR (1252.7064)
[10] array · 5 items
[0]
OXLA_BOTIN
[1]
Bothrops insularis
[2]
5.3
[3]
37
[4]
ADDKNPLEECFR (1493.7653)
[11] array · 7 items
[0]
4a
[1]
Serine protease VLSp-3
[2]
VSP3_MACLB
[3]
Macrovipera lebetina
[4]
29
[5]
25
[6]
TSTHIAPLSLPSSPPSVGSVCR (2250.4505)
[12] array · 7 items
[0]
4b
[1]
Snake venom serine protease nikobin
[2]
VSP_VIPNI
[3]
Vipera nikolskii
[4]
28.8
[5]
64
[6]
PMF SC 25.7%
[13] array · 2 items
[0]
53
[1]
CQGVHPELPAK (1235.6438)
[14] array · 2 items
[0]
55
[1]
VVCAGIWQGGK (1174.6110)
[15] array · 2 items
[0]
96
[1]
VILPDVPHCANIEIIK (1831.0636)
[16] array · 2 items
[0]
36
[1]
EYTMWDK (972.4713)
[17] array · 7 items
[0]
5
[1]
Beta- fibrinogenase brevinase
[2]
VSPB_GLOBL
[3]
Gloydius blomhoffi
[4]
26.3
[5]
56
[6]
VIGGDECNINEHR (1512.7806)
[18] array · 5 items
[0]
VSPBF_MACLB
[1]
Macrovipera lebetina
[2]
28.2
[3]
26
[4]
FFCLSSK (888.4284)
[19] array · 6 items
[0]
Thrombin-like enzyme crotalase
[1]
VSPCR_CROAD
[2]
Crotalus adamanteus
[3]
30.1
[4]
36
[5]
WDKDIMLIR (1189.6561)
[20] array · 6 items
[0]
Venom serine proteinase-like protein 2
[1]
VSP2_MACLB
[2]
Macrovipera lebetina
[3]
29.5
[4]
70
[5]
IMGWGTITTTK (1208.6420)
[21] array · 2 items
[0]
134
[1]
TLCAGILQGGIDSCK (1592.7767)
[22] array · 7 items
[0]
6
[1]
Cysteine rich venom protein
[2]
CRVP_VIPBE
[3]
Vipera berus
[4]
27.4
[5]
73
[6]
MEWYPEAAANAER (1537.6894)
[23] array · 2 items
[0]
53
[1]
PMF SC 24.7%
[24] array · 2 items
[0]
74
[1]
PMF SC 36.4%
[25] array · 2 items
[0]
51
[1]
KPEIQNEIIDLHNSLR (1919.0970)
[26] array · 7 items
[0]
7
[1]
Snake venom metalloproteinase VMP1
[2]
VM1V1_AGKPL
[3]
Agkistrodon piscivorus leucostoma
[4]
47.1
[5]
58
[6]
NPQCILNKPLR (1352.7017)
[27] array · 6 items
[0]
Zinc metalloproteinase/disintegrin
[1]
VM2L2_MACLB
[2]
Macrovipera lebetina
[3]
47.1
[4]
58
[5]
NPQCILNQPL (1352.7017)
[28] array · 7 items
[0]
8a
[1]
Snaclec rhinocetin submit beta
[2]
SLRB_BITRH
[3]
Bitis rhinoceros
[4]
18.7
[5]
59
[6]
TTDNQWLR (1033.6040)
[29] array · 7 items
[0]
8b
[1]
Snaclec A14
[2]
SLAE_MACLB
[3]
Macrovipera lebetina
[4]
18
[5]
39
[6]
TSADYVWIGLWNQR (1708.9104)
[30] array · 7 items
[0]
8c
[1]
Snaclec B6
[2]
SLB6_MACLB
[3]
Macrovipera lebetina
[4]
15.3
[5]
43
[6]
ANLVWIGLR (1041.6803)
[31] array · 7 items
[0]
8d
[1]
Snaclec echicetin subunit alpha
[2]
SLA_ECHCA
[3]
Echis carinatus
[4]
16.1
[5]
37
[6]
TWDEAEKFCNK (1427.6446)
[32] array · 7 items
[0]
8e
[1]
Snaclec 1
[2]
SL1_ECHCS
[3]
Echis carinatus sochureki
[4]
17.1
[5]
35
[6]
GSHLVSLHNIAEADFVVK (1936.0465)
[33] array · 7 items
[0]
8f
[1]
Snaclec rhodocetin subunit alpha
[2]
SLEA_CALRH
[3]
Calloselasma rhodostoma
[4]
15.9
[5]
47
[6]
TWEEAER (920.46147)
[34] array · 7 items
[0]
8f
[1]
Snaclec A13
[2]
SLAD_MACLB
[3]
Macrovipera lebetina
[4]
15.6
[5]
26
[6]
DQDCLPGWSFYEGHCYK (2161.9310)
[35] array · 7 items
[0]
8g
[1]
Snaclec jerdonibitin submit alpha
[2]
SLA_PROJR
[3]
Protobothrops jerdoni
[4]
18.1
[5]
45
[6]
TWEDAER (906.4700)
[36] array · 7 items
[0]
9
[1]
Acidic phospholipase ammodytin I1
[2]
PA2A1_VIPAA
[3]
Vipera ammodytes ammodytes
[4]
16.2
[5]
56
[6]
PMF SC 30.4%
[37] array · 6 items
[0]
Acidic phospholipase A2 PLA-1
[1]
PA2A1_ERIMA
[2]
Eristicophis macmahoni
[3]
14.3
[4]
58
[5]
PMF SC 36.4%
[38] array · 6 items
[0]
Acidic phospholipase A2 PL1
[1]
PA2A1_VIPRE
[2]
Viprea renardi
[3]
16.2
[4]
72
[5]
CCFVHDCCYGR (1533.4506)
[39] array · 7 items
[0]
10
[1]
Neutral phospholipase A2 ammodytoxin I2
[2]
PA2N_DABRR
[3]
Vipera ammodytes ammodytes
[4]
16.1
[5]
56
[6]
PMF SC 30%
[40] array · 7 items
[0]
11
[1]
Basic phospholipase A2 ammodytoxin C
[2]
PA2BA_VIPAA
[3]
Vipera ammodytes ammodytes
[4]
15.4
[5]
28
[6]
AAAICFR (808.4193)
[41] array · 6 items
[0]
Basic phospholipase A2 Pla2Vb
[1]
PA2B_VIPBB
[2]
Vipera berus berus
[3]
15.7
[4]
48
[5]
HICECDR (989.4389)
[42] array · 6 items
[0]
Basic phospholipase A2 vurtoxin
[1]
PA2B_VIPRE
[2]
Vipera renardi
[3]
16.4
[4]
31
[5]
YYPDFLCK (1105.5024)
[43] array · 6 items
[0]
Basic phospholipase A2
[1]
PA2B3_DABRR
[2]
Daboia russelii
[3]
14.4
[4]
142
[5]
CCFVHDCCYGNLPDCNPK (2315.8464)
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section[3]/table-wrap[1]#molecules-21-01398-t001
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Composition of the peptidome of V. berus berus venom.
structure object · 5 fields
pmcid
PMC6274168
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4
section_title
2.2. Peptidome
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5
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7
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label
Table 2
caption
Composition of the peptidome of V. berus berus venom.
rows array · 5 items
[0] array · 7 items
[0]
Parent Ion m/z
[1]
Identified Peptide &
[2]
Accession *
[3]
Organism ¥
[4]
Peptide Sequence ≠
[5]
Mass (Da) £
[6]
S ±
[1] array · 7 items
[0]
1072.5704
[1]
Bradykinin potentiating peptide D
[2]
gi 229282
[3]
Gloydius blomhoffii
[4]
EGLPPRPIPP
[5]
1072
[6]
14
[2] array · 7 items
[0]
1144.6198
[1]
Bradykinin-potentiating peptide S1,2,4
[2]
BPP4_BOTIN
[3]
Bothrops insularis
[4]
QGGPPRPQIPP + Deamidated (NQ)
[5]
1143
[6]
31
[3] array · 7 items
[0]
1166.5968
[1]
Bradykinin-potentiating peptide 11a
[2]
BP11A_CROVV
[3]
Crotalus viridis viridis
[4]
QGPSPRHPIPP + Gln→pyro-Glu (N-term Q); Deamidated (NQ)
[5]
1182
[6]
5
[4] array · 7 items
[0]
1182.5725
[1]
Bradykinin-potentiating peptide 10d
[2]
BPPAD_BOTCO
[3]
Bothrops cotiara
[4]
QNWPHPPMPP + Gln→pyro-Glu (N-term Q)
[5]
1200
[6]
9
locator
section[4]/table-wrap[1]#molecules-21-01398-t002
gaps array · 2 items
[0]
asset:data:geo:PXD004958 not downloaded
[1]
asset:data:geo:PXD004958 licence not read
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operations
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[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
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readiness object · 8 fields
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blocked
tier
R4
blocking_axis
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blocked_on
method:not_determinable
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R4
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false
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capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
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The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
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tier
R1
reachable
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[0]
PXD004958
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[0]
PXD004958
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Sample Availability: Samples are not available from the authors.
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The paper names PXD004958 in ProteomeXchange Consortium via the PRIDE partner repository and the accession resolves in the repository. No dataset was downloaded and no licence was read.
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imensional electrophoresis and MALDI ToF/ToF mass spectrometry. A total of 11 protein classes have been ide
[1]
bradykinin-potentiating peptides family. The mass spectrometry data are available via ProteomeXchange with
[2]
rotein identification based on MALDI ToF/ToF mass spectrometry were chosen. For the peptide analysis direct
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were chosen. For the peptide analysis direct mass spectrometry approach was used. Protein concentration was
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Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:27775574", "kind": "science-record", "revision": 5, "content_hash": "sha256:f51474d231392db648f11787ef3eee0c72147ddf253afdca9764a695a8c8583f", "created_at": "2026-11-01T15:40:21Z", "updated_at": "2026-11-01T18:48:25Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Proteome and Peptidome of Vipera berus berus Venom.", "doi": "10.3390/molecules21101398", "pmid": "27775574", "authors": ["Aleksandra Bocian", "Małgorzata Urbanik", "Konrad Hus", "Andrzej Łyskowski", "Vladimír Petrilla", "Zuzana Andrejčáková", "Monika Petrillová", "Jaroslav Legath"], "journal": "Molecules (Basel, Switzerland)", "year": 2016, "abstract": "Snake venom is a rich source of peptides and proteins with a wide range of actions. Many of the venom components are currently being tested for their usefulness in the treatment of many diseases ranging from neurological and cardiovascular to cancer. It is also important to constantly search for new proteins and peptides with properties not yet described. The venom of Vipera berus berus has hemolytic, proteolytic and cytotoxic properties, but its exact composition and the factors responsible for these properties are not known. Therefore, an attempt was made to identify proteins and peptides derived from this species venom by using high resolution two-dimensional electrophoresis and MALDI ToF/ToF mass spectrometry. A total of 11 protein classes have been identified mainly proteases but also l-amino acid oxidases, C-type lectin like proteins, cysteine-rich venom proteins and phospholipases A₂ and 4 peptides of molecular weight less than 1500 Da. Most of the identified proteins are responsible for the highly hemotoxic properties of the venom. Presence of venom phospholipases A₂ and l-amino acid oxidases cause moderate neuro-, myo- and cytotoxicity. All successfully identified peptides belong to the bradykinin-potentiating peptides family. The mass spectrometry data are available via ProteomeXchange with identifier PXD004958.", "claims": [{"id": "claim-data-access", "statement": "Sample Availability: Samples are not available from the authors.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:27775574", "locator": "sections[11] \"Footnotes\" paragraph 2", "quote": "Sample Availability: Samples are not available from the authors."}], "state": "complete"}, {"id": "claim-target-result", "statement": "The study identified 11 venom protein classes and four peptides; protein-group abundance was estimated using spot-volume percentages (%Vol) averaged across technical replicates and both isoelectrofocusing ranges, and the mass-spectrometry proteomics data were deposited via PRIDE in ProteomeXchange under identifier PXD004958.", "kind": "qualitative", "target": null, "evidence": [{"asset": "source:pmid:27775574", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "A total of 11 protein classes have been identified mainly proteases but also l-amino acid oxidases, C-type lectin like proteins, cysteine-rich venom proteins and phospholipases A2 and 4 peptides of molecular weight less than 1500 Da."}, {"asset": "source:pmid:27775574", "locator": "sections[6] \"4. 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This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:PXD004958"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:PXD004958"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:27775574", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.3390/molecules21101398", "sha256": "sha256:9fdd3dbb385a98d3e9a04c7c538a39daf1989ba2fc98afa3a70a5cebf6a1869b", "bytes": 38315, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.3390/molecules21101398", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC6274168", "source": "europe_pmc_fulltext", "coverage": "whole_body", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:PXD004958", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=PXD004958", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "PXD004958", "version": null, "note": "Sample Availability: Samples are not available from the authors.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Sample Availability: Samples are not available from the authors.", "access_statement_kind": "data_availability_statement", "sample_accessions": [], "sample_count": null, "group_sizes": null, "group_sizes_basis": null, "platform": null, "taxon": null, "title": "Proteome and peptidome of Vipera berus berus venom", "resolution_checked_at": "2026-10-31T18:35:55Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "asset:table:pmid:27775574:1", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:1691df6c00e6052206f2d2f58ad6319b500169eedad0f187f82d006f755f130e", "bytes": 4078, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[3]/table-wrap[1]#molecules-21-01398-t001", "version": null, "note": "Composition of V. berus berus venom proteins.", "structure": {"pmcid": "PMC6274168", "section_index": 3, "section_title": "2.1. 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