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pmid:28422174

High expression of matrix metalloproteinases 16 is associated with the aggressive malignant behavior and poor survival outcome in colorectal carcinoma.

Shengwen Wu · Congchao Ma · Shaoyin Shan · Lei Zhou · Wenhui Li

Scientific reports · 2017 doi:10.1038/srep46531

Paper

complete

Experiment

complete

Data

partial

Analysis

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Execution

absent

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Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
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pmid:28422174
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2026-11-01T15:40:25Z
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paper object · 10 fields
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title
High expression of matrix metalloproteinases 16 is associated with the aggressive malignant behavior and poor survival outcome in colorectal carcinoma.
doi
10.1038/srep46531
pmid
28422174
authors array · 5 items
[0]
Shengwen Wu
[1]
Congchao Ma
[2]
Shaoyin Shan
[3]
Lei Zhou
[4]
Wenhui Li
journal
Scientific reports
year
2017
abstract
Recent evidence suggested an important role of matrix metalloproteinases 16 (MMP16) in the progression of several cancers. However, the contribution of MMP16 to colorectal cancer (CRC) remains elusive. In this study, we combined analyzed the MMP16 expression in The Cancer Genome Atlas (TCGA), GSE39582 database and in-house database. In TCGA and GSE39584 database, the log-rank test demonstrated that overall survival (OS) for patients with low MMP16 expression in tumor tissues was significantly higher than those with high expression (P < 0.05). In the validation cohort, high MMP16 expression was significantly correlated with N stage (P = 0.008) and lymphovascular invasion (P = 0.002). The 5-year OS and disease free survival (DFS) in high and low MMP16 expression groups were 66.0% and 80.6%, 54.3% and 72.8%, respectively. Univariate and multivariate analysis showed that high MMP16 expression was an independently prognosis factor for both OS and DFS (P < 0.05). Functional study found that silencing MMP16 expression could inhibit migration and invasion of colon cancer cells. In conclusion, high expression of MMP16 is associated with the aggressive malignant behavior and poor survival outcome of CRC patients. MMP16 can serve as an indicator of prognosis as well as a potential novel target for treatment of CRC patients.
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The survival curves were estimated by Kaplan-Meier analysis, and P values were calculated by log rank test.
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sections[18] "Statistical Analysis" paragraph 2
quote
The survival curves were estimated by Kaplan-Meier analysis, and P values were calculated by log rank test.
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Gene expression (RNA-Seq) data and corresponding clinical data of CRC samples were retrieved from TCGA database ((https://genome-cancer.ucsc.edu/) and GSE39582 database (https://www.ncbi.nlm.nih.gov/geo/).
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sections[10] "Patients in TCGA and GSE39582 database" paragraph 2
quote
Gene expression (RNA-Seq) data and corresponding clinical data of CRC samples were retrieved from TCGA database ((https://genome-cancer.ucsc.edu/) and GSE39582 database (https://www.ncbi.nlm.nih.gov/geo/).
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Using log-rank survival analysis of MMP16 expression in TCGA and GSE39582 cohorts, with findings validated in an in-house CRC cohort, the paper found that high MMP16 expression was associated with poorer survival outcomes.
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qualitative
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sections[0] "Abstract" paragraph 1
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In TCGA and GSE39584 database, the log-rank test demonstrated that overall survival (OS) for patients with low MMP16 expression in tumor tissues was significantly higher than those with high expression (P < 0.05).
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sections[0] "Abstract" paragraph 1
quote
In the validation cohort, high MMP16 expression was significantly correlated with N stage (P = 0.008) and lymphovascular invasion (P = 0.002).
[2] object · 3 fields
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source:pmid:28422174
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sections[0] "Abstract" paragraph 1
quote
The 5-year OS and disease free survival (DFS) in high and low MMP16 expression groups were 66.0% and 80.6%, 54.3% and 72.8%, respectively.
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sections[0] "Abstract" paragraph 1
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In conclusion, high expression of MMP16 is associated with the aggressive malignant behavior and poor survival outcome of CRC patients.
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Using log-rank survival analysis of MMP16 expression in TCGA and GSE39582 cohorts, with findings validated in an in-house CRC cohort, the paper found that high MMP16 expression was associated with poorer survival outcomes.
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GSM972402
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GSM972404
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570
taxon
Homo sapiens
title
Gene expression Classification of Colon Cancer defines six molecular subtypes with distinct clinical, molecular and survival characteristics [Expression]
resolution_checked_at
2026-11-01T15:39:54Z
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Clinical characteristics of patients with colorectal cancer in the TCGA, GSE39582 and validation cohort.
structure object · 5 fields
pmcid
PMC5396192
section_index
5
section_title
MMP16 expression in TCGA and GSE39582 database
row_count
30
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7
table object · 8 fields
label
Table 1
caption
Clinical characteristics of patients with colorectal cancer in the TCGA, GSE39582 and validation cohort.
rows array · 30 items
[0] array · 4 items
[0]
Variable
[1]
TCGA
[2]
GSE39582
[3]
Validation Cohort
[1] array · 6 items
[0]
N
[1]
%
[2]
N
[3]
%
[4]
N
[5]
%
[2] array · 7 items
[0]
Sex
[1]
[2]
[3]
[4]
[5]
[6]
[3] array · 7 items
[0]
Male
[1]
316
[2]
45.4
[3]
213
[4]
44.9
[5]
99
[6]
51.6
[4] array · 7 items
[0]
Female
[1]
263
[2]
54.6
[3]
261
[4]
55.1
[5]
93
[6]
48.4
[5] array · 7 items
[0]
Age
[1]
66
[2]
31–90
[3]
67
[4]
22–97
[5]
66
[6]
22–85
[6] array · 7 items
[0]
Grade
[1]
[2]
[3]
[4]
[5]
[6]
[7] array · 7 items
[0]
G1
[1]
/
[2]
/
[3]
/
[4]
/
[5]
88
[6]
45.8
[8] array · 7 items
[0]
G2
[1]
/
[2]
/
[3]
/
[4]
/
[5]
77
[6]
40.1
[9] array · 7 items
[0]
G3
[1]
/
[2]
/
[3]
/
[4]
/
[5]
27
[6]
14.1
[10] array · 7 items
[0]
T stage
[1]
[2]
[3]
[4]
[5]
[6]
[11] array · 7 items
[0]
T1/T2
[1]
115
[2]
19.9
[3]
52
[4]
11.0
[5]
46
[6]
24.0
[12] array · 7 items
[0]
T3/T4
[1]
462
[2]
79.8
[3]
418
[4]
88.2
[5]
146
[6]
76.0
[13] array · 7 items
[0]
TX
[1]
2
[2]
0.3
[3]
4
[4]
0.8
[5]
/
[6]
/
[14] array · 7 items
[0]
N stage
[1]
[2]
[3]
[4]
[5]
[6]
[15] array · 7 items
[0]
N0
[1]
323
[2]
55.8
[3]
283
[4]
59.7
[5]
110
[6]
57.3
[16] array · 7 items
[0]
N1
[1]
144
[2]
24.9
[3]
108
[4]
22.8
[5]
55
[6]
28.6
[17] array · 7 items
[0]
N2
[1]
108
[2]
18.7
[3]
78
[4]
16.5
[5]
27
[6]
14.1
[18] array · 7 items
[0]
Nx
[1]
4
[2]
0.7
[3]
1
[4]
1.1
[5]
/
[6]
/
[19] array · 7 items
[0]
M stage
[1]
[2]
[3]
[4]
[5]
[6]
[20] array · 7 items
[0]
M0
[1]
426
[2]
73.6
[3]
474
[4]
100
[5]
192
[6]
100
[21] array · 7 items
[0]
M1
[1]
83
[2]
14.3
[3]
/
[4]
/
[5]
/
[6]
/
[22] array · 7 items
[0]
Mx
[1]
70
[2]
12.1
[3]
/
[4]
/
[5]
/
[6]
/
[23] array · 7 items
[0]
Lymphovascular invasion
[1]
[2]
[3]
[4]
[5]
[6]
[24] array · 7 items
[0]
Negative
[1]
318
[2]
54.9
[3]
/
[4]
/
[5]
168
[6]
87.5
[25] array · 7 items
[0]
Positive
[1]
201
[2]
34.7
[3]
/
[4]
/
[5]
24
[6]
12.5
[26] array · 7 items
[0]
Unknown
[1]
60
[2]
10.4
[3]
/
[4]
/
[5]
/
[6]
/
[27] array · 7 items
[0]
Perineural invasion
[1]
[2]
[3]
[4]
[5]
[6]
[28] array · 7 items
[0]
Negative
[1]
/
[2]
/
[3]
/
[4]
/
[5]
164
[6]
85.4
[29] array · 7 items
[0]
Positive
[1]
/
[2]
/
[3]
/
[4]
/
[5]
28
[6]
14.6
locator
section[5]/table-wrap[1]#t1
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Association between MMP16 expression and clinic pathological factors in the validation cohort.
structure object · 5 fields
pmcid
PMC5396192
section_index
6
section_title
Validation of MMP16 expression in in-house database
row_count
28
column_count
6
table object · 8 fields
label
Table 2
caption
Association between MMP16 expression and clinic pathological factors in the validation cohort.
rows array · 28 items
[0] array · 5 items
[0]
Variable
[1]
n
[2]
MMP16 Expression
[3]
χ2 Value
[4]
P value
[1] array · 2 items
[0]
Low
[1]
High
[2] array · 6 items
[0]
Gender
[1]
[2]
[3]
[4]
0.021
[5]
0.885
[3] array · 6 items
[0]
Male
[1]
99
[2]
50
[3]
49
[4]
[5]
[4] array · 6 items
[0]
Female
[1]
93
[2]
46
[3]
47
[4]
[5]
[5] array · 6 items
[0]
Age
[1]
[2]
[3]
[4]
0.209
[5]
0.647
[6] array · 6 items
[0]
≦60
[1]
65
[2]
31
[3]
34
[4]
[5]
[7] array · 6 items
[0]
>60
[1]
127
[2]
65
[3]
62
[4]
[5]
[8] array · 6 items
[0]
T category
[1]
[2]
[3]
[4]
0.457
[5]
0.499
[9] array · 6 items
[0]
T1/2
[1]
46
[2]
21
[3]
25
[4]
[5]
[10] array · 6 items
[0]
T3/4
[1]
146
[2]
75
[3]
71
[4]
[5]
[11] array · 6 items
[0]
N stage
[1]
[2]
[3]
[4]
9.546
[5]
0.008
[12] array · 6 items
[0]
N0
[1]
110
[2]
64
[3]
46
[4]
[5]
[13] array · 6 items
[0]
N1
[1]
55
[2]
18
[3]
37
[4]
[5]
[14] array · 6 items
[0]
N2
[1]
27
[2]
14
[3]
13
[4]
[5]
[15] array · 6 items
[0]
Pathological grading
[1]
[2]
[3]
[4]
2.225
[5]
0.329
[16] array · 6 items
[0]
High
[1]
88
[2]
39
[3]
49
[4]
[5]
[17] array · 6 items
[0]
Moderate
[1]
77
[2]
43
[3]
34
[4]
[5]
[18] array · 6 items
[0]
Poor
[1]
27
[2]
14
[3]
13
[4]
[5]
[19] array · 6 items
[0]
Lymphovascular invasion
[1]
[2]
[3]
[4]
9.733
[5]
0.002
[20] array · 6 items
[0]
Negative
[1]
168
[2]
91
[3]
77
[4]
[5]
[21] array · 6 items
[0]
Positive
[1]
24
[2]
5
[3]
19
[4]
[5]
[22] array · 6 items
[0]
Perineural invasion
[1]
[2]
[3]
[4]
0.669
[5]
0.413
[23] array · 6 items
[0]
Negative
[1]
164
[2]
84
[3]
80
[4]
[5]
[24] array · 6 items
[0]
Positive
[1]
28
[2]
12
[3]
16
[4]
[5]
[25] array · 6 items
[0]
Ki67
[1]
[2]
[3]
[4]
0.637
[5]
0.425
[26] array · 6 items
[0]
Negative
[1]
55
[2]
30
[3]
25
[4]
[5]
[27] array · 6 items
[0]
Positive
[1]
137
[2]
66
[3]
71
[4]
[5]
locator
section[6]/table-wrap[1]#t2
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Univariate and multivariate Cox proportional hazards analysis of MMP16 expression and overall survival for patients with colorectal cancer in the validation cohort.
structure object · 5 fields
pmcid
PMC5396192
section_index
6
section_title
Validation of MMP16 expression in in-house database
row_count
11
column_count
5
table object · 8 fields
label
Table 3
caption
Univariate and multivariate Cox proportional hazards analysis of MMP16 expression and overall survival for patients with colorectal cancer in the validation cohort.
rows array · 11 items
[0] array · 3 items
[0]
Factor
[1]
Univariate analysis
[2]
Multivariate analysis
[1] array · 4 items
[0]
HR (95% CI)
[1]
P
[2]
HR (95% CI)
[3]
P
[2] array · 5 items
[0]
Gender
[1]
0.677 (0.403–1.136)
[2]
0.139
[3]
[4]
[3] array · 5 items
[0]
Age
[1]
1.148 (0.659–2.000)
[2]
0.625
[3]
[4]
[4] array · 5 items
[0]
Grade
[1]
1.909 (1.356–2.687)
[2]
<0.001
[3]
1.518 (1.045–2.205)
[4]
0.028
[5] array · 5 items
[0]
T category
[1]
7.152 (2.237–22.863)
[2]
0.001
[3]
4.273 (1.305–13.992)
[4]
0.016
[6] array · 5 items
[0]
N stage
[1]
3.765 (2.677–5.293)
[2]
<0.001
[3]
3.114 (2.069–4.685)
[4]
<0.001
[7] array · 5 items
[0]
Lymphovascular invasion
[1]
2.193 (1.182–4.069)
[2]
0.013
[3]
1.109 (0.585–2.103)
[4]
0.750
[8] array · 5 items
[0]
Perineural invasion
[1]
2.390 (1.329–4.299)
[2]
0.004
[3]
0.781 (0.406–1.503)
[4]
0.459
[9] array · 5 items
[0]
Tumor location
[1]
0.837 (0.491–1.427)
[2]
0.514
[3]
[4]
[10] array · 5 items
[0]
MMP16
[1]
1.992 (1.168–3.395)
[2]
0.011
[3]
1.938 (1.129–3.372)
[4]
0.038
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Univariate and multivariate Cox proportional hazards analysis of MMP16 expression and disease free survival for patients with colorectal cancer in the validation cohort.
structure object · 5 fields
pmcid
PMC5396192
section_index
6
section_title
Validation of MMP16 expression in in-house database
row_count
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column_count
5
table object · 8 fields
label
Table 4
caption
Univariate and multivariate Cox proportional hazards analysis of MMP16 expression and disease free survival for patients with colorectal cancer in the validation cohort.
rows array · 11 items
[0] array · 3 items
[0]
Factor
[1]
Univariate analysis
[2]
Multivariate analysis
[1] array · 4 items
[0]
HR (95% CI)
[1]
P
[2]
HR (95% CI)
[3]
P
[2] array · 5 items
[0]
Gender
[1]
0.787 (0.488–1.268)
[2]
0.325
[3]
[4]
[3] array · 5 items
[0]
Age
[1]
1.065 (0.641–1.770)
[2]
0.809
[3]
[4]
[4] array · 5 items
[0]
T category
[1]
4.054 (1.752–9.377)
[2]
0.001
[3]
2.736 (1.155–6.483)
[4]
0.022
[5] array · 5 items
[0]
N stage
[1]
3.259 (2.377–4.469)
[2]
<0.001
[3]
2.711 (1.881–3.907)
[4]
<0.001
[6] array · 5 items
[0]
Grade
[1]
1.941 (1.411–2.671)
[2]
<0.001
[3]
1.650 (1.171–2.325)
[4]
0.004
[7] array · 5 items
[0]
Lymphovascular invasion
[1]
2.165 (1.202–3.900)
[2]
0.010
[3]
1.139 (0.616–2.106)
[4]
0.677
[8] array · 5 items
[0]
Perineural invasion
[1]
1.969 (1.108–3.491)
[2]
0.021
[3]
0.771 (0.412–1.443)
[4]
0.416
[9] array · 5 items
[0]
Tumor location
[1]
0.726 (0.439–1.200)
[2]
0.211
[3]
[4]
[10] array · 5 items
[0]
MMP16
[1]
1.818 (1.118–2.955)
[2]
0.022
[3]
1.839 (1.122–3.016)
[4]
0.023
locator
section[6]/table-wrap[3]#t4
gaps array · 2 items
[0]
asset:data:geo:GSE39582 not downloaded
[1]
asset:data:geo:GSE39582 licence not read
analysis object · 4 fields
state
complete
methods array · 4 items
[0] object · 10 fields
id
method-1
family
survival_analysis
specific
kaplan_meier
label
Survival analysis
dsl_operations array · 1 item
[0]
survival_km
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
time_to_event_with_censoring
evidence object · 3 fields
score
1
band
verbatim
quote
The survival curves were estimated by Kaplan-Meier analysis, and P values were calculated by log rank test.
[1] object · 10 fields
id
method-2
family
survival_analysis
specific
cox_proportional_hazards
label
Survival analysis
dsl_operations array · 1 item
[0]
cox_ph
missing_operations array · 0 items
parameters object · 1 field
hazard_ratio
estimate the individual hazard ratio (HR) for the DFS and OS
data_shapes array · 1 item
[0]
time_to_event_with_censoring
evidence object · 3 fields
score
0.8
band
high
quote
Cox proportional hazards
[2] object · 10 fields
id
method-3
family
survival_analysis
specific
log_rank_test
label
Survival analysis
dsl_operations array · 1 item
[0]
logrank_test
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
time_to_event_with_censoring
evidence object · 3 fields
score
0.7
band
medium
quote
log-rank
[3] object · 10 fields
id
method-4
family
contingency_analysis
specific
chi_square
label
Categorical (contingency table) analysis
dsl_operations array · 1 item
[0]
chi_square_test
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
categorical_cross_tabulation
evidence object · 3 fields
score
0.8
band
high
quote
χ2
targets array · 0 items
gaps array · 0 items
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
true
required_operations array · 1 item
[0]
survival_km
missing_operations array · 0 items
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: kaplan_meier.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 1 item
[0]
GSE39582
resolved_accessions array · 1 item
[0]
GSE39582
statements array · 1 item
[0]
Gene expression (RNA-Seq) data and corresponding clinical data of CRC samples were retrieved from TCGA database ((https://genome-cancer.ucsc.edu/) and GSE39582 database (https://www.ncbi.nlm.nih.gov/geo/).
basis
The paper names GSE39582 in Gene Expression Omnibus (GEO), GSE39582 database and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 1 item
[0]
survival_km
assets array · 6 items
[0]
source:pmid:28422174
[1]
data:geo:GSE39582
[2]
asset:table:pmid:28422174:1
[3]
asset:table:pmid:28422174:2
[4]
asset:table:pmid:28422174:3
[5]
asset:table:pmid:28422174:4
steps array · 1 item
[0]
run_analysis
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE39582
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-10-31T18:30:53Z
independence
same_provider
evidence_check object · 2 fields
method
verbatim
availability
null
calls
8
usage object · 3 fields
prompt_tokens
48503
completion_tokens
3038
cached_tokens
2096
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:28422174
type
paper
label
pmid:28422174
[1] object · 3 fields
id
source:pmid:28422174
type
manuscript
label
PMID 28422174 full text
[2] object · 3 fields
id
data:geo:GSE39582
type
dataset
label
GEO GSE39582
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:28422174
type
paper
label
pmid:28422174
[1] object · 3 fields
id
source:pmid:28422174
type
manuscript
label
PMID 28422174 full text
[2] object · 3 fields
id
data:geo:GSE39582
type
dataset
label
GEO GSE39582
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-28422174
type
extraction
used array · 1 item
[0]
source:pmid:28422174
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE39582
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE39582
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:28422174
parent_hash
sha256:50a48f705bf0af304900607fe7cb8ed34ae5f8cba410cb26a8bcd919065bcac3
fork_of
null
gaps array · 6 items
[0]
asset:data:geo:GSE39582 licence not read
[1]
asset:data:geo:GSE39582 not downloaded
[2]
execution.not_run
[3]
review.human_critique
[4]
review.independent_reader
[5]
review.machine_critique
assays array · 2 items
[0] object · 11 fields
role
data_generation
definition_id
cell_culture
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.77
evidence array · 1 item
[0]
e Collection (Manassas, VA, USA). Cells were cultured in DMEM medium (Invitrogen, Carlsbad, CA, USA)
order_basis
paper_text_order:3605
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assay:1
[1] object · 11 fields
role
analysis
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survival_analysis
definition_version
f2132e96ae6c7a4e
required_operations array · 1 item
[0]
survival_km
support_state
supported
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
The survival curves were estimated by Kaplan-Meier analysis, and P values were calculated by log rank test.
order_basis
consumes_earlier_output
id
assay:2
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:28422174", "kind": "science-record", "revision": 8, "content_hash": "sha256:c5a08bbfda04463c55b1abfe3c7f5e0ec173bcf8430968c4ef00586fe0679e96", "created_at": "2026-11-01T15:40:25Z", "updated_at": "2026-11-01T22:42:58Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "High expression of matrix metalloproteinases 16 is associated with the aggressive malignant behavior and poor survival outcome in colorectal carcinoma.", "doi": "10.1038/srep46531", "pmid": "28422174", "authors": ["Shengwen Wu", "Congchao Ma", "Shaoyin Shan", "Lei Zhou", "Wenhui Li"], "journal": "Scientific reports", "year": 2017, "abstract": "Recent evidence suggested an important role of matrix metalloproteinases 16 (MMP16) in the progression of several cancers. However, the contribution of MMP16 to colorectal cancer (CRC) remains elusive. In this study, we combined analyzed the MMP16 expression in The Cancer Genome Atlas (TCGA), GSE39582 database and in-house database. In TCGA and GSE39584 database, the log-rank test demonstrated that overall survival (OS) for patients with low MMP16 expression in tumor tissues was significantly higher than those with high expression (P < 0.05). In the validation cohort, high MMP16 expression was significantly correlated with N stage (P = 0.008) and lymphovascular invasion (P = 0.002). The 5-year OS and disease free survival (DFS) in high and low MMP16 expression groups were 66.0% and 80.6%, 54.3% and 72.8%, respectively. Univariate and multivariate analysis showed that high MMP16 expression was an independently prognosis factor for both OS and DFS (P < 0.05). Functional study found that silencing MMP16 expression could inhibit migration and invasion of colon cancer cells. In conclusion, high expression of MMP16 is associated with the aggressive malignant behavior and poor survival outcome of CRC patients. MMP16 can serve as an indicator of prognosis as well as a potential novel target for treatment of CRC patients.", "claims": [{"id": "claim-method", "statement": "The survival curves were estimated by Kaplan-Meier analysis, and P values were calculated by log rank test.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:28422174", "locator": "sections[18] \"Statistical Analysis\" paragraph 2", "quote": "The survival curves were estimated by Kaplan-Meier analysis, and P values were calculated by log rank test."}], "state": "complete"}, {"id": "claim-data-access", "statement": "Gene expression (RNA-Seq) data and corresponding clinical data of CRC samples were retrieved from TCGA database ((https://genome-cancer.ucsc.edu/) and GSE39582 database (https://www.ncbi.nlm.nih.gov/geo/).", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:28422174", "locator": "sections[10] \"Patients in TCGA and GSE39582 database\" paragraph 2", "quote": "Gene expression (RNA-Seq) data and corresponding clinical data of CRC samples were retrieved from TCGA database ((https://genome-cancer.ucsc.edu/) and GSE39582 database (https://www.ncbi.nlm.nih.gov/geo/)."}], "state": "complete"}, {"id": "claim-target-result", "statement": "Using log-rank survival analysis of MMP16 expression in TCGA and GSE39582 cohorts, with findings validated in an in-house CRC cohort, the paper found that high MMP16 expression was associated with poorer survival outcomes.", "kind": "qualitative", "target": null, "evidence": [{"asset": "source:pmid:28422174", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "In TCGA and GSE39584 database, the log-rank test demonstrated that overall survival (OS) for patients with low MMP16 expression in tumor tissues was significantly higher than those with high expression (P < 0.05)."}, {"asset": "source:pmid:28422174", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "In the validation cohort, high MMP16 expression was significantly correlated with N stage (P = 0.008) and lymphovascular invasion (P = 0.002)."}, {"asset": "source:pmid:28422174", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "The 5-year OS and disease free survival (DFS) in high and low MMP16 expression groups were 66.0% and 80.6%, 54.3% and 72.8%, respectively."}, {"asset": "source:pmid:28422174", "locator": "sections[0] \"Abstract\" paragraph 1", "quote": "In conclusion, high expression of MMP16 is associated with the aggressive malignant behavior and poor survival outcome of CRC patients."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": "Using log-rank survival analysis of MMP16 expression in TCGA and GSE39582 cohorts, with findings validated in an in-house CRC cohort, the paper found that high MMP16 expression was associated with poorer survival outcomes.", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:28422174"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. 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