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pmid:28508029

A B-Cell Gene Signature Correlates With the Extent of Gluten-Induced Intestinal Injury in Celiac Disease.

Mitchell E Garber · Alok Saldanha · Joel S Parker · Wendell D Jones · Katri Kaukinen · Kaija Laurila · Marja-Leena Lähdeaho · Purvesh Khatri · Chaitan Khosla · Daniel C Adelman · Markku Mäki

Cellular and molecular gastroenterology and hepatology · 2017 doi:10.1016/j.jcmgh.2017.01.011

Paper

complete

Experiment

complete

Data

partial

Analysis

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Execution

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title
A B-Cell Gene Signature Correlates With the Extent of Gluten-Induced Intestinal Injury in Celiac Disease.
doi
10.1016/j.jcmgh.2017.01.011
pmid
28508029
authors array · 11 items
[0]
Mitchell E Garber
[1]
Alok Saldanha
[2]
Joel S Parker
[3]
Wendell D Jones
[4]
Katri Kaukinen
[5]
Kaija Laurila
[6]
Marja-Leena Lähdeaho
[7]
Purvesh Khatri
[8]
Chaitan Khosla
[9]
Daniel C Adelman
[10]
Markku Mäki
journal
Cellular and molecular gastroenterology and hepatology
year
2017
abstract
BACKGROUND & AIMS: Celiac disease (CeD) provides an opportunity to study autoimmunity and the transition in immune cells as dietary gluten induces small intestinal lesions. METHODS: Seventy-three celiac disease patients on a long-term, gluten-free diet ingested a known amount of gluten daily for 6 weeks. A peripheral blood sample and intestinal biopsy specimens were taken before and 6 weeks after initiating the gluten challenge. Biopsy results were reported on a continuous numeric scale that measured the villus-height-to-crypt-depth ratio to quantify gluten-induced intestinal injury. Pooled B and T cells were isolated from whole blood, and RNA was analyzed by DNA microarray looking for changes in peripheral B- and T-cell gene expression that correlated with changes in villus height to crypt depth, as patients maintained a relatively healthy intestinal mucosa or deteriorated in the face of a gluten challenge. RESULTS: Gluten-dependent intestinal damage from baseline to 6 weeks varied widely across all patients, ranging from no change to extensive damage. Genes differentially expressed in B cells correlated strongly with the extent of intestinal damage. A relative increase in B-cell gene expression correlated with a lack of sensitivity to gluten whereas their relative decrease correlated with gluten-induced mucosal injury. A core B-cell gene module, representing a subset of B-cell genes analyzed, accounted for the correlation with intestinal injury. CONCLUSIONS: Genes comprising the core B-cell module showed a net increase in expression from baseline to 6 weeks in patients with little to no intestinal damage, suggesting that these individuals may have mounted a B-cell immune response to maintain mucosal homeostasis and circumvent inflammation. DNA microarray data were deposited at the GEO repository (accession number: GSE87629; available: https://www.ncbi.nlm.nih.gov/geo/).
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The chi-square test was used to determine whether the number of patients who segregated above and below baseline for the 2 groups differed from expected values distributed randomly.
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sections[24] "Immune Response in Patients With Little to No Gluten-Induced Intestinal Injury" paragraph 2
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The chi-square test was used to determine whether the number of patients who segregated above and below baseline for the 2 groups differed from expected values distributed randomly.
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DNA microarray data were deposited at the GEO repository (accession number: GSE87629; available: https://www.ncbi.nlm.nih.gov/geo/).
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Gluten-Dependent Intestinal Damage
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[26] array · 11 items
[0]
AG
[1]
2.5
[2]
0.9
[3]
1.6
[4]
3
[5]
51–60
[6]
M
[7]
11
[8]
23
[9]
2
[10]
Pos
[27] array · 11 items
[0]
BK
[1]
2.6
[2]
1
[3]
1.6
[4]
3
[5]
41–50
[6]
M
[7]
14
[8]
24
[9]
2
[10]
Pos
[28] array · 11 items
[0]
S
[1]
2.8
[2]
1.2
[3]
1.6
[4]
6
[5]
61–70
[6]
F
[7]
11
[8]
14
[9]
-
[10]
Neg
[29] array · 11 items
[0]
AN
[1]
2.9
[2]
1.3
[3]
1.6
[4]
3
[5]
41–50
[6]
F
[7]
16
[8]
5
[9]
-
[10]
Neg
[30] array · 11 items
[0]
AU
[1]
1.7
[2]
0.2
[3]
1.5
[4]
3
[5]
61–70
[6]
M
[7]
22
[8]
21
[9]
-
[10]
Baseline pos
[31] array · 11 items
[0]
DK
[1]
3
[2]
1.5
[3]
1.5
[4]
1.5
[5]
61–70
[6]
F
[7]
9
[8]
8
[9]
-
[10]
Neg
[32] array · 11 items
[0]
AL
[1]
2.7
[2]
1.3
[3]
1.4
[4]
3
[5]
51–60
[6]
M
[7]
11
[8]
52
[9]
5
[10]
Pos
[33] array · 11 items
[0]
AI
[1]
2.5
[2]
1.2
[3]
1.3
[4]
3
[5]
51–60
[6]
F
[7]
8
[8]
95
[9]
12
[10]
Pos
[34] array · 11 items
[0]
AK
[1]
2.9
[2]
1.6
[3]
1.3
[4]
3
[5]
61–70
[6]
F
[7]
15
[8]
7
[9]
-
[10]
Neg
[35] array · 11 items
[0]
AE
[1]
2.4
[2]
1.1
[3]
1.3
[4]
3
[5]
71–80
[6]
M
[7]
8
[8]
67
[9]
8
[10]
Pos
[36] array · 11 items
[0]
T
[1]
2.9
[2]
1.7
[3]
1.2
[4]
6
[5]
61–70
[6]
M
[7]
7
[8]
15
[9]
-
[10]
Neg
[37] array · 11 items
[0]
AD
[1]
2.3
[2]
1.1
[3]
1.2
[4]
3
[5]
51–60
[6]
F
[7]
50
[8]
41
[9]
-
[10]
Baseline pos
[38] array · 11 items
[0]
DF
[1]
2.6
[2]
1.5
[3]
1.1
[4]
1.5
[5]
51–60
[6]
M
[7]
6
[8]
4
[9]
-
[10]
Neg
[39] array · 11 items
[0]
L
[1]
1.4
[2]
0.3
[3]
1.1
[4]
6
[5]
61–70
[6]
M
[7]
23
[8]
209
[9]
-
[10]
Baseline pos
[40] array · 11 items
[0]
AM
[1]
3.3
[2]
2.2
[3]
1.1
[4]
3
[5]
51–60
[6]
F
[7]
6
[8]
6
[9]
-
[10]
Neg
[41] array · 11 items
[0]
CE
[1]
1.3
[2]
0.4
[3]
0.9
[4]
1.5
[5]
61–70
[6]
M
[7]
10
[8]
21
[9]
2
[10]
Pos
[42] array · 11 items
[0]
DC
[1]
2.9
[2]
2
[3]
0.9
[4]
1.5
[5]
51–60
[6]
F
[7]
7
[8]
5
[9]
-
[10]
Neg
[43] array · 11 items
[0]
CA
[1]
3.6
[2]
2.8
[3]
0.8
[4]
1.5
[5]
31–40
[6]
F
[7]
8
[8]
7
[9]
-
[10]
Neg
[44] array · 11 items
[0]
DZ
[1]
3.2
[2]
2.4
[3]
0.8
[4]
1.5
[5]
61–70
[6]
F
[7]
6
[8]
5
[9]
-
[10]
Neg
[45] array · 11 items
[0]
CG
[1]
2
[2]
1.3
[3]
0.7
[4]
1.5
[5]
61–70
[6]
F
[7]
6
[8]
8
[9]
-
[10]
Neg
[46] array · 11 items
[0]
DQ
[1]
2.9
[2]
2.2
[3]
0.7
[4]
1.5
[5]
61–70
[6]
F
[7]
4
[8]
3
[9]
-
[10]
Neg
[47] array · 11 items
[0]
DY
[1]
3
[2]
2.3
[3]
0.7
[4]
1.5
[5]
61–70
[6]
F
[7]
7
[8]
5
[9]
-
[10]
Neg
[48] array · 11 items
[0]
DB
[1]
2.9
[2]
2.2
[3]
0.7
[4]
1.5
[5]
41–50
[6]
M
[7]
9
[8]
6
[9]
-
[10]
Neg
[49] array · 11 items
[0]
C
[1]
1.1
[2]
0.5
[3]
0.6
[4]
6
[5]
21–30
[6]
F
[7]
74
[8]
239
[9]
-
[10]
Baseline pos
[50] array · 11 items
[0]
CN
[1]
3.1
[2]
2.5
[3]
0.6
[4]
1.5
[5]
71–80
[6]
F
[7]
14
[8]
11
[9]
-
[10]
Neg
[51] array · 11 items
[0]
AT
[1]
2.3
[2]
1.7
[3]
0.6
[4]
3
[5]
41–50
[6]
M
[7]
25
[8]
70
[9]
-
[10]
Baseline pos
[52] array · 11 items
[0]
DG
[1]
2.9
[2]
2.5
[3]
0.4
[4]
1.5
[5]
61–70
[6]
F
[7]
3
[8]
3
[9]
-
[10]
Neg
[53] array · 11 items
[0]
U
[1]
2.5
[2]
2.1
[3]
0.4
[4]
6
[5]
51–60
[6]
F
[7]
15
[8]
32
[9]
2
[10]
Pos
[54] array · 11 items
[0]
DH
[1]
3.3
[2]
3
[3]
0.3
[4]
1.5
[5]
61–70
[6]
F
[7]
6
[8]
4
[9]
-
[10]
Neg
[55] array · 11 items
[0]
DW
[1]
2.6
[2]
2.3
[3]
0.3
[4]
1.5
[5]
61–70
[6]
M
[7]
8
[8]
6
[9]
-
[10]
Neg
[56] array · 11 items
[0]
A
[1]
2.9
[2]
2.6
[3]
0.3
[4]
6
[5]
41–50
[6]
F
[7]
47
[8]
43
[9]
-
[10]
Baseline pos
[57] array · 11 items
[0]
CB
[1]
3
[2]
2.7
[3]
0.3
[4]
1.5
[5]
31–40
[6]
F
[7]
17
[8]
32
[9]
2
[10]
Pos
[58] array · 11 items
[0]
CJ
[1]
3
[2]
2.8
[3]
0.2
[4]
1.5
[5]
61–70
[6]
F
[7]
8
[8]
7
[9]
-
[10]
Neg
[59] array · 11 items
[0]
DR
[1]
2.9
[2]
2.7
[3]
0.2
[4]
1.5
[5]
61–70
[6]
F
[7]
8
[8]
6
[9]
-
[10]
Neg
[60] array · 11 items
[0]
AO
[1]
2.9
[2]
2.8
[3]
0.1
[4]
3
[5]
51–60
[6]
M
[7]
14
[8]
16
[9]
-
[10]
Neg
[61] array · 11 items
[0]
DJ
[1]
2.7
[2]
2.6
[3]
0.1
[4]
1.5
[5]
61–70
[6]
F
[7]
16
[8]
11
[9]
-
[10]
Neg
[62] array · 11 items
[0]
Q
[1]
2.8
[2]
2.7
[3]
0.1
[4]
6
[5]
61–70
[6]
M
[7]
13
[8]
32
[9]
2
[10]
Pos
[63] array · 11 items
[0]
N
[1]
2.7
[2]
2.7
[3]
0
[4]
6
[5]
51–60
[6]
M
[7]
8
[8]
10
[9]
-
[10]
Neg
[64] array · 11 items
[0]
DN
[1]
2.3
[2]
2.3
[3]
0
[4]
1.5
[5]
61–70
[6]
M
[7]
14
[8]
12
[9]
-
[10]
Neg
[65] array · 11 items
[0]
DP
[1]
2.8
[2]
2.8
[3]
0
[4]
1.5
[5]
51–60
[6]
M
[7]
7
[8]
6
[9]
-
[10]
Neg
[66] array · 11 items
[0]
DM
[1]
1.3
[2]
1.4
[3]
-0.1
[4]
1.5
[5]
41–50
[6]
F
[7]
13
[8]
12
[9]
-
[10]
Neg
[67] array · 11 items
[0]
AJ
[1]
2.5
[2]
2.6
[3]
-0.1
[4]
3
[5]
51–60
[6]
F
[7]
13
[8]
16
[9]
-
[10]
Neg
[68] array · 11 items
[0]
DX
[1]
2.9
[2]
3.1
[3]
-0.2
[4]
1.5
[5]
61–70
[6]
F
[7]
10
[8]
6
[9]
-
[10]
Neg
[69] array · 11 items
[0]
CT
[1]
2.8
[2]
3
[3]
-0.2
[4]
1.5
[5]
71–80
[6]
M
[7]
15
[8]
23
[9]
2
[10]
Pos
[70] array · 11 items
[0]
AR
[1]
2.3
[2]
2.6
[3]
-0.3
[4]
3
[5]
51–60
[6]
M
[7]
13
[8]
22
[9]
2
[10]
Pos
[71] array · 11 items
[0]
DA
[1]
2.4
[2]
2.8
[3]
-0.4
[4]
1.5
[5]
51–60
[6]
F
[7]
36
[8]
22
[9]
-
[10]
Baseline pos
[72] array · 11 items
[0]
AX
[1]
2.8
[2]
3.3
[3]
-0.5
[4]
3
[5]
51–60
[6]
M
[7]
20
[8]
19
[9]
-
[10]
Baseline pos
[73] array · 11 items
[0]
AB
[1]
2.3
[2]
3.4
[3]
-1.1
[4]
3
[5]
41–50
[6]
M
[7]
9
[8]
9
[9]
-
[10]
Neg
locator
section[18]/table-wrap[1]#tbl1
[4] object · 16 fields
id
asset:table:pmid:28508029:2
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:8d3247a0528538e948cf4f310385d768583a1cf978a57ef7c4f4f08ee690092b
bytes
3054
access
open
state
verified
reader
read_table
reader_status
available
identifier
section[22]/table-wrap[1]#tbl2
version
null
note
Gene Symbols and the Corresponding Illumina Microarray Probe IDs Representing the Core B-Cell Gene Module, Non-correlating B-Cell Gene List, and the Extended Core B-Cell Gene Module
structure object · 5 fields
pmcid
PMC5413199
section_index
22
section_title
A Subset of B-Cell Genes Drives Correlation to ΔVh:Cd
row_count
38
column_count
7
table object · 8 fields
label
Table 2
caption
Gene Symbols and the Corresponding Illumina Microarray Probe IDs Representing the Core B-Cell Gene Module, Non-correlating B-Cell Gene List, and the Extended Core B-Cell Gene Module
rows array · 38 items
[0] array · 3 items
[0]
Core B-cell gene module
[1]
Non-correlating B-cell gene list
[2]
Extended core B-cell gene module
[1] array · 7 items
[0]
Gene
[1]
Probe ID
[2]
Gene
[3]
Probe ID
[4]
Gene
[5]
Probe ID
[6]
B-cell expression
[2] array · 5 items
[0]
[1]
[2]
[3]
[4]
All probes from core B-cell gene module plus the following
[3] array · 7 items
[0]
ADAM28
[1]
ILMN_1664631
[2]
ABCB4
[3]
ILMN_1767349
[4]
AFF3
[5]
ILMN_1775235
[6]
1
[4] array · 7 items
[0]
ALOX5
[1]
ILMN_1680996
[2]
BACH2
[3]
ILMN_1670695
[4]
ALS2CR13
[5]
ILMN_1739942
[6]
ND
[5] array · 7 items
[0]
BACH2
[1]
ILMN_2058468
[2]
BLNK
[3]
ILMN_2142935
[4]
BASP1
[5]
ILMN_1651826
[6]
3
[6] array · 7 items
[0]
BANK1
[1]
ILMN_1661646
[2]
CCR9
[3]
ILMN_2337386
[4]
BTK
[5]
ILMN_1662026
[6]
4
[7] array · 7 items
[0]
BCL11A
[1]
ILMN_1659800
[2]
CCR9
[3]
ILMN_1664316
[4]
C22ORF13
[5]
ILMN_1764410
[6]
ND
[8] array · 7 items
[0]
BCL11A
[1]
ILMN_1752899
[2]
CD180
[3]
ILMN_1665647
[4]
C4ORF34
[5]
ILMN_2224907
[6]
ND
[9] array · 7 items
[0]
BCL11A
[1]
ILMN_2255133
[2]
CD1C
[3]
ILMN_1654210
[4]
CD24
[5]
ILMN_2060413
[6]
4
[10] array · 7 items
[0]
BCL11A
[1]
ILMN_2342271
[2]
CD40
[3]
ILMN_2367818
[4]
CD74
[5]
ILMN_1736567
[6]
3
[11] array · 7 items
[0]
BLK
[1]
ILMN_1668277
[2]
CD79B
[3]
ILMN_1710017
[4]
CD74
[5]
ILMN_2379644
[6]
3
[12] array · 7 items
[0]
BLR1
[1]
ILMN_2337928
[2]
CD79B
[3]
ILMN_1785439
[4]
CD79A
[5]
ILMN_1734878
[6]
4
[13] array · 7 items
[0]
CD19
[1]
ILMN_1782704
[2]
CD79B
[3]
ILMN_2366212
[4]
CNTNAP2
[5]
ILMN_1690223
[6]
1
[14] array · 7 items
[0]
CD22
[1]
ILMN_1792075
[2]
COCH
[3]
ILMN_1711514
[4]
CXXC5
[5]
ILMN_1745256
[6]
ND
[15] array · 7 items
[0]
CD37
[1]
ILMN_1786176
[2]
CR2
[3]
ILMN_1684724
[4]
CYBASC3
[5]
ILMN_2129505
[6]
ND
[16] array · 7 items
[0]
CD37
[1]
ILMN_2375825
[2]
CR2
[3]
ILMN_2369666
[4]
FAIM3
[5]
ILMN_1775542
[6]
2
[17] array · 7 items
[0]
CD40
[1]
ILMN_1779257
[2]
EAF2
[3]
ILMN_1708798
[4]
FCRLA
[5]
ILMN_1691071
[6]
ND
[18] array · 7 items
[0]
CD72
[1]
ILMN_1723004
[2]
FCGR2B
[3]
ILMN_1804174
[4]
GGA2
[5]
ILMN_1686152
[6]
3
[19] array · 7 items
[0]
CD79A
[1]
ILMN_1659227
[2]
FCGR2B
[3]
ILMN_2382403
[4]
HLA-DQB1
[5]
ILMN_1661266
[6]
2
[20] array · 7 items
[0]
FCER2
[1]
ILMN_1662451
[2]
FCGR2B
[3]
ILMN_1660027
[4]
HLA-DRB4
[5]
ILMN_1752592
[6]
5
[21] array · 7 items
[0]
GNG7
[1]
ILMN_1728107
[2]
FCRL2
[3]
ILMN_1665152
[4]
KIAA0746
[5]
ILMN_1797822
[6]
3
[22] array · 7 items
[0]
HHEX
[1]
ILMN_1762712
[2]
FCRL2
[3]
ILMN_1791329
[4]
LYN
[5]
ILMN_1781155
[6]
3
[23] array · 7 items
[0]
HLA-DOB
[1]
ILMN_1700428
[2]
KIAA0125
[3]
ILMN_1707491
[4]
MARCKS
[5]
ILMN_1807042
[6]
2
[24] array · 7 items
[0]
HLA-DQA1
[1]
ILMN_1808405
[2]
LOC653980
[3]
ILMN_1659943
[4]
MDS028
[5]
ILMN_1701244
[6]
2
[25] array · 7 items
[0]
OSBPL10
[1]
ILMN_1669497
[2]
LOC91353
[3]
ILMN_2083066
[4]
NAPSB
[5]
ILMN_2109416
[6]
ND
[26] array · 7 items
[0]
PNOC
[1]
ILMN_1676003
[2]
MEF2C
[3]
ILMN_1742544
[4]
PLCG2
[5]
ILMN_1815719
[6]
3
[27] array · 7 items
[0]
RASGRP3
[1]
ILMN_1727045
[2]
MS4A1
[3]
ILMN_2401714
[4]
PTPN6
[5]
ILMN_1738675
[6]
3
[28] array · 7 items
[0]
SPIB
[1]
ILMN_2143314
[2]
MS4A1
[3]
ILMN_1776939
[4]
SEMA4B
[5]
ILMN_1672589
[6]
ND
[29] array · 7 items
[0]
TCL1A
[1]
ILMN_1788841
[2]
P2RX5
[3]
ILMN_1677793
[4]
SIDT2
[5]
ILMN_1791912
[6]
2
[30] array · 7 items
[0]
VPREB3
[1]
ILMN_1700147
[2]
P2RY14
[3]
ILMN_2258409
[4]
SNX2
[5]
ILMN_1691575
[6]
3
[31] array · 7 items
[0]
[1]
[2]
P2RY14
[3]
ILMN_2342835
[4]
SWAP70
[5]
ILMN_1785175
[6]
4
[32] array · 7 items
[0]
[1]
[2]
RALGPS2
[3]
ILMN_1654692
[4]
SYK
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Spearman Correlation of B- and T-Cell Gene Lists With ΔVh:Cd
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A Subset of B-Cell Genes Drives Correlation to ΔVh:Cd
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Spearman Correlation of B- and T-Cell Gene Lists With ΔVh:Cd
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The chi-square test was used to determine whether the number of patients who segregated above and below baseline for the 2 groups differed from expected values distributed randomly.
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DNA microarray data were deposited at the GEO repository (accession number: GSE87629; available: https://www.ncbi.nlm.nih.gov/geo/).
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Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:28508029", "kind": "science-record", "revision": 6, "content_hash": "sha256:ede402e04761ba16651b476f3b56b9120bf46910fe7a16e209ea54057ae51f59", "created_at": "2026-11-01T15:40:25Z", "updated_at": "2026-11-01T21:20:54Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "A B-Cell Gene Signature Correlates With the Extent of Gluten-Induced Intestinal Injury in Celiac Disease.", "doi": "10.1016/j.jcmgh.2017.01.011", "pmid": "28508029", "authors": ["Mitchell E Garber", "Alok Saldanha", "Joel S Parker", "Wendell D Jones", "Katri Kaukinen", "Kaija Laurila", "Marja-Leena Lähdeaho", "Purvesh Khatri", "Chaitan Khosla", "Daniel C Adelman", "Markku Mäki"], "journal": "Cellular and molecular gastroenterology and hepatology", "year": 2017, "abstract": "BACKGROUND & AIMS: Celiac disease (CeD) provides an opportunity to study autoimmunity and the transition in immune cells as dietary gluten induces small intestinal lesions.\nMETHODS: Seventy-three celiac disease patients on a long-term, gluten-free diet ingested a known amount of gluten daily for 6 weeks. A peripheral blood sample and intestinal biopsy specimens were taken before and 6 weeks after initiating the gluten challenge. Biopsy results were reported on a continuous numeric scale that measured the villus-height-to-crypt-depth ratio to quantify gluten-induced intestinal injury. Pooled B and T cells were isolated from whole blood, and RNA was analyzed by DNA microarray looking for changes in peripheral B- and T-cell gene expression that correlated with changes in villus height to crypt depth, as patients maintained a relatively healthy intestinal mucosa or deteriorated in the face of a gluten challenge.\nRESULTS: Gluten-dependent intestinal damage from baseline to 6 weeks varied widely across all patients, ranging from no change to extensive damage. Genes differentially expressed in B cells correlated strongly with the extent of intestinal damage. A relative increase in B-cell gene expression correlated with a lack of sensitivity to gluten whereas their relative decrease correlated with gluten-induced mucosal injury. A core B-cell gene module, representing a subset of B-cell genes analyzed, accounted for the correlation with intestinal injury.\nCONCLUSIONS: Genes comprising the core B-cell module showed a net increase in expression from baseline to 6 weeks in patients with little to no intestinal damage, suggesting that these individuals may have mounted a B-cell immune response to maintain mucosal homeostasis and circumvent inflammation. 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This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE3982"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE3982"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:28508029", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1016/j.jcmgh.2017.01.011", "sha256": 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