Proteogenomics data for deciphering Frankia coriariae interactions with root exudates from three host plants.

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Bacteria cells and their exoproteomes were analyzed by high-throughput proteomics using a Q-Exactive HF high resolution tandem mass spectrometer incorporating an ultra-high-field orbitrap analyzer. MS/MS spectra were assigned with two protein sequence databases derived from the closely-related genomes from strains BMG5.1 andDg1, the Frankia symbiont of Datisca glomerata. The tandem mass spectrometry data accompanying the manuscript describing the database searches and comparative analysis (Ktari et al., 2017, doi.org/10.3389/fmicb.2017.00720) [1] have been deposited to the ProteomeXchange with identifiers PXD005979 (whole cell proteomes) and PXD005980 (exoproteome data).", "claims": [{"id": "claim-data-access", "statement": "Data is within this article and deposited to the ProteomeXchange via the PRIDE repository with identifiers PRIDE:PXD005979(whole cell proteomes) andPXD005980(exoproteome data).", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:28765834", "locator": "sections[1] \"p\" paragraph 1", "quote": "Data is within this article and deposited to the ProteomeXchange via the PRIDE repository with identifiers PRIDE:PXD005979(whole cell proteomes) andPXD005980(exoproteome data)."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": "The paper used three independent biological replicates per condition, with peptide-to-spectrum matches filtered at p<0.05, and deposited the 24 raw and interpreted files through ProteomeXchange via PRIDE under PXD005979 (whole-cell proteomes) and PXD005980 (exoproteome data).", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:28765834"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. 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