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pmid:28795104

Microarray dataset of transgenic rice overexpressing Abp57.

Lay Wen Tan · Cheng Seng Tan · Zuraida A Rahman · Hoe-Han Goh · Ismanizan Ismail · Zamri Zainal

Data in brief · 2017 doi:10.1016/j.dib.2017.07.047

Paper

complete

Experiment

complete

Data

partial

Analysis

complete

Execution

absent

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title
Microarray dataset of transgenic rice overexpressing Abp57.
doi
10.1016/j.dib.2017.07.047
pmid
28795104
authors array · 6 items
[0]
Lay Wen Tan
[1]
Cheng Seng Tan
[2]
Zuraida A Rahman
[3]
Hoe-Han Goh
[4]
Ismanizan Ismail
[5]
Zamri Zainal
journal
Data in brief
year
2017
abstract
The dataset presented in this article describes microarray experiment of Auxin-binding protein 57, Abp57-overexpressing transgenic rice. The gene expression profiles were generated using Affymetrix GeneChip® Rice (Cn) Gene 1.0 ST Arrays. Total RNA from seedlings tissue of transgenic rice and wildtype, which serve as control were used as starting materials for microarray experiment. Detailed experimental methods and data analysis were described here. The raw and normalized microarray data were deposited into Gene Expression Omnibus (GEO) under accession number GSE99055.
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The CHP files generated from normalization were subsequently loaded into Transcriptome Analysis Console (TAC) Software for obtaining differential gene expression data using one-way ANOVA (unpaired) and default filter criteria of fold change >|2| with ANOVA p-value of less than 0.05.
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The CHP files generated from normalization were subsequently loaded into Transcriptome Analysis Console (TAC) Software for obtaining differential gene expression data using one-way ANOVA (unpaired) and default filter criteria of fold change >|2| with ANOVA p-value of less than 0.05.
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sections[6] "Microarray data normalization and processing" paragraph 4
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Global gene expression in Abp57-overexpressing transgenic rice
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The National University of Malaysia, 43600 Bangi, Malaysia (3°16′14.63″ N, 101°41′11.32″ E)
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