Time-course mass spectrometry data of adipose mesenchymal stem cells acquiring chondrogenic phenotype.

{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:30208918", "kind": "science-record", "revision": 4, "content_hash": "sha256:b6e7dbea2578463b354b332a0e795e72a7eeffee7222997739e9af021588347f", "created_at": "2026-11-01T15:40:37Z", "updated_at": "2026-11-01T21:21:38Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Time-course mass spectrometry data of adipose mesenchymal stem cells acquiring chondrogenic phenotype.", "doi": "10.1186/s13104-018-3750-6", "pmid": "30208918", "authors": ["Jeffrey R Janus", "Stephen G Voss", "Benjamin J Madden", "Mary Cristine Charlesworth", "Michael S Oldenburg", "Dale Ekbom", "Serban San-Marina"], "journal": "BMC research notes", "year": 2018, "abstract": "OBJECTIVES: Rabbit adipose mesenchymal stem cells were used for the purpose of studying acquisition of the chondrogenic phenotype over time at 1, 14 and 28 days after in vitro incubation with differentiation media, using nano-liquid chromatography electrospray ionization tandem mass spectrometry analysis. This was part of a preliminary study of the behavior of differentiated adipose stem cells for use in a rabbit model of laryngoplasty.\nDATA DESCRIPTION: The data comprise .MGF, .RAW, .MZID, and .XLSX, lists of peaks, peptides and proteins identified by nano-flow liquid chromatography electrospray ionization tandem mass spectrometry analysis upon incubation with non-differentiating (ND) or chondrogenic differentiating (CHD) media (ProteomeXchange ID PXD010236). XLSX files contain the following information: day 1 CT (control, N = 3499 proteins), day 14 ND (N = 3106 proteins), day 28 ND (N = 3116 proteins), day 14 CHD (N = 2901 proteins), and day 28 CHD (N = 2876 proteins). Proteins are characterized with respect to their - 10lgP value, percent coverage, number of total as well as unique peptides after trypsin digestion, derivatization method (carbamidomethylation, oxidation, or combined carbamidomethylation + oxidation), average mass, and include a full description.", "claims": [{"id": "claim-method", "statement": "Peptide IDs were accepted if they could be established at greater than 95% probability by the Scaffold Local FDR algorithm.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:30208918", "locator": "sections[5] \"nLC–MS/MS analysis\" paragraph 2", "quote": "Peptide IDs were accepted if they could be established at greater than 95% probability by the Scaffold Local FDR algorithm."}], "state": "complete"}, {"id": "claim-data-access", "statement": "Data can be freely and openly accessed at ProteomeXchange (http://www.identifiers.org/px/PXD010236). Please see Table 1 and reference list for details and links to the data.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:30208918", "locator": "sections[10] \"Availability of data materials\" paragraph 2", "quote": "Data can be freely and openly accessed at ProteomeXchange (http://www.identifiers.org/px/PXD010236). 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Please see Table 1 and reference list for details and links to the data.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Data can be freely and openly accessed at ProteomeXchange (http://www.identifiers.org/px/PXD010236). 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