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pmid:31190871

Identification and validation of an individualized autophagy-clinical prognostic index in bladder cancer patients.

Shi-Shuo Wang · Gang Chen · Sheng-Hua Li · Jin-Shu Pang · Kai-Teng Cai · Hai-Biao Yan · Zhi-Guang Huang · Rong-Quan He

OncoTargets and therapy · 2019 doi:10.2147/OTT.S197676

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Experiment

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Data

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title
Identification and validation of an individualized autophagy-clinical prognostic index in bladder cancer patients.
doi
10.2147/OTT.S197676
pmid
31190871
authors array · 8 items
[0]
Shi-Shuo Wang
[1]
Gang Chen
[2]
Sheng-Hua Li
[3]
Jin-Shu Pang
[4]
Kai-Teng Cai
[5]
Hai-Biao Yan
[6]
Zhi-Guang Huang
[7]
Rong-Quan He
journal
OncoTargets and therapy
year
2019
abstract
Purpose: Autophagy is a major catabolic system by which eukaryotic cells undergo self-degradation of damaged, defective, or unwanted intracellular components. An abnormal autophagic level is implicated in the pathogenesis of multiple diseases, including cancers. The aim of this study is to explore the prognostic value of autophagy in bladder cancer (BC), which is a major cause of cancer-related death globally. Patients and methods: First, 27 differentially expressed autophagy-related genes (ARGs) were identified in BC patients based on The Cancer Genome Atlas (TCGA) database. Functional enrichment analyses hinted that autophagy may act in a tumor-suppressive role in the initiation of BC. Then, the Cox proportional hazard regression model were employed to identify three key prognostic ARGs (JUN, MYC, and ITGA3), which were related with overall survival (OS) significantly in BC. The three genes represented important clinical significance and prognostic value in BC. Then a prognostic index (PI) was constructed. Results: The PI was constructed based on the three genes, and significantly stratified BC patients into high- and low-risk groups in terms of OS (HR=1.610, 95% CI=1.200-2.160, P=0.002). PI remained as an independent prognostic factor in multivariate analyses (HR=2.355, 95% CI=1.483-3.739, P<0.001). When integrated with clinical characteristics of age and stage, an autophagy-clinical prognostic index (ACPI) was finally validated, which had improved performance in predicting OS of BC patients (HR=2.669, 95% CI=1.986-3.587, P<0.001). The ACPI was confirmed in datasets of GSE13507 (HR=7.389, 95% CI=3.645-14.980, P<0.001) and GSE31684 (HR=1.665, 95% CI=0.872-3.179, P=0.122). Conclusion: This study provides a potential prognostic signature for predicting prognosis of BC patients and molecular insights of autophagy in BC.
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The Multivariate Cox proportional hazards regression model was used to construct the PI and ACPI model based on the factor correlated with survival.
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The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
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sections[17] "Data sharing statement" paragraph 2
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The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
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GSM102534
[111]
GSM102535
[112]
GSM102536
[113]
GSM102537
[114]
GSM102538
[115]
GSM102539
[116]
GSM102540
[117]
GSM102541
[118]
GSM102542
[119]
GSM102543
[120]
GSM102544
[121]
GSM102545
[122]
GSM102546
[123]
GSM102547
[124]
GSM102548
[125]
GSM102549
[126]
GSM102550
[127]
GSM102551
[128]
GSM102552
[129]
GSM102553
[130]
GSM102554
[131]
GSM102555
[132]
GSM102556
[133]
GSM102557
[134]
GSM102558
[135]
GSM102559
[136]
GSM102560
[137]
GSM102561
[138]
GSM102562
[139]
GSM102563
[140]
GSM102564
[141]
GSM102565
[142]
GSM102566
[143]
GSM102567
[144]
GSM102568
[145]
GSM102569
[146]
GSM102570
[147]
GSM102571
[148]
GSM102572
[149]
GSM102573
[150]
GSM102574
[151]
GSM102575
[152]
GSM102576
[153]
GSM102577
[154]
GSM102578
[155]
GSM102579
[156]
GSM102580
[157]
GSM102581
[158]
GSM102582
[159]
GSM102583
[160]
GSM117576
[161]
GSM117577
[162]
GSM117578
[163]
GSM117579
[164]
GSM117580
[165]
GSM117581
[166]
GSM117582
[167]
GSM117583
[168]
GSM117584
[169]
GSM117585
[170]
GSM117586
[171]
GSM117587
[172]
GSM117588
[173]
GSM117589
[174]
GSM117590
[175]
GSM117591
[176]
GSM117592
[177]
GSM117600
[178]
GSM117610
[179]
GSM117626
[180]
GSM117629
[181]
GSM117632
[182]
GSM117635
[183]
GSM117639
[184]
GSM117642
[185]
GSM117643
[186]
GSM117644
[187]
GSM117645
[188]
GSM117646
[189]
GSM117647
[190]
GSM117648
[191]
GSM117649
[192]
GSM117650
[193]
GSM117651
[194]
GSM117652
[195]
GSM117653
[196]
GSM117655
[197]
GSM117656
[198]
GSM117657
[199]
GSM117658
[200]
GSM117659
[201]
GSM117660
[202]
GSM117661
[203]
GSM117662
[204]
GSM117663
[205]
GSM117664
[206]
GSM117665
[207]
GSM117666
[208]
GSM117667
[209]
GSM117668
[210]
GSM117669
[211]
GSM117670
[212]
GSM117671
[213]
GSM117672
[214]
GSM117673
[215]
GSM117674
[216]
GSM117675
[217]
GSM117676
[218]
GSM117677
[219]
GSM117678
[220]
GSM117679
[221]
GSM117680
[222]
GSM117681
[223]
GSM117682
[224]
GSM117683
[225]
GSM117684
[226]
GSM117685
[227]
GSM117686
[228]
GSM117687
[229]
GSM117688
[230]
GSM117689
[231]
GSM117690
[232]
GSM117691
[233]
GSM117692
[234]
GSM117693
[235]
GSM117694
[236]
GSM117695
[237]
GSM117696
[238]
GSM117697
[239]
GSM117698
[240]
GSM117699
[241]
GSM117700
[242]
GSM117701
[243]
GSM117702
[244]
GSM117703
[245]
GSM117704
[246]
GSM117705
[247]
GSM117706
[248]
GSM117707
[249]
GSM117708
[250]
GSM117709
[251]
GSM117710
[252]
GSM117711
[253]
GSM117712
[254]
GSM117713
[255]
GSM117714
[256]
GSM117715
[257]
GSM117716
[258]
GSM117717
[259]
GSM117718
[260]
GSM117719
[261]
GSM117720
[262]
GSM117721
[263]
GSM117722
[264]
GSM117723
[265]
GSM117724
[266]
GSM117725
[267]
GSM117726
[268]
GSM117727
[269]
GSM117728
[270]
GSM117729
[271]
GSM117730
[272]
GSM117731
[273]
GSM117732
[274]
GSM117734
[275]
GSM117735
[276]
GSM117736
[277]
GSM117737
[278]
GSM117738
[279]
GSM117739
[280]
GSM117740
[281]
GSM117741
[282]
GSM117742
[283]
GSM117743
[284]
GSM117744
[285]
GSM117745
[286]
GSM117746
[287]
GSM117747
[288]
GSM117748
[289]
GSM117749
[290]
GSM117750
[291]
GSM117751
[292]
GSM117752
[293]
GSM117753
[294]
GSM117754
[295]
GSM117755
[296]
GSM117756
[297]
GSM117757
[298]
GSM117758
[299]
GSM117759
[300]
GSM117760
[301]
GSM117761
[302]
GSM117762
[303]
GSM117763
[304]
GSM117765
[305]
GSM117766
[306]
GSM117767
[307]
GSM117768
[308]
GSM117769
[309]
GSM117770
[310]
GSM117771
[311]
GSM117772
[312]
GSM117774
[313]
GSM117775
[314]
GSM117776
[315]
GSM117777
[316]
GSM137895
[317]
GSM137896
[318]
GSM137897
[319]
GSM137898
[320]
GSM137899
[321]
GSM137900
[322]
GSM137901
[323]
GSM137902
[324]
GSM137903
[325]
GSM137904
[326]
GSM137905
[327]
GSM137906
[328]
GSM137907
[329]
GSM137908
[330]
GSM137909
[331]
GSM137910
[332]
GSM137911
[333]
GSM137912
[334]
GSM137913
[335]
GSM137914
[336]
GSM137915
[337]
GSM137916
[338]
GSM137917
[339]
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[340]
GSM137919
[341]
GSM137920
[342]
GSM137921
[343]
GSM137922
[344]
GSM137923
[345]
GSM137924
[346]
GSM137925
[347]
GSM137926
[348]
GSM137927
[349]
GSM137928
[350]
GSM137929
[351]
GSM137930
[352]
GSM137931
[353]
GSM137932
[354]
GSM137933
[355]
GSM137934
[356]
GSM137935
[357]
GSM137936
[358]
GSM137937
[359]
GSM137938
[360]
GSM137939
[361]
GSM137940
[362]
GSM137941
[363]
GSM137942
[364]
GSM137943
[365]
GSM137944
[366]
GSM137945
[367]
GSM137946
[368]
GSM137947
[369]
GSM137948
[370]
GSM137949
[371]
GSM137950
[372]
GSM137951
[373]
GSM137952
[374]
GSM137953
[375]
GSM137954
[376]
GSM137955
[377]
GSM137956
[378]
GSM137957
[379]
GSM137958
[380]
GSM137959
[381]
GSM137960
[382]
GSM137961
[383]
GSM137962
[384]
GSM137963
[385]
GSM137964
[386]
GSM137965
[387]
GSM137966
[388]
GSM137967
[389]
GSM137968
[390]
GSM137969
[391]
GSM137970
[392]
GSM137971
[393]
GSM137972
[394]
GSM137973
[395]
GSM137974
[396]
GSM137975
[397]
GSM137976
[398]
GSM137977
[399]
GSM137978
[400]
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[401]
GSM137980
[402]
GSM137981
[403]
GSM137982
[404]
GSM137983
[405]
GSM137984
[406]
GSM137985
[407]
GSM137986
[408]
GSM137987
[409]
GSM137988
[410]
GSM137989
[411]
GSM137990
[412]
GSM137991
[413]
GSM137992
[414]
GSM137993
[415]
GSM137994
[416]
GSM137995
[417]
GSM137996
[418]
GSM137997
[419]
GSM137998
[420]
GSM137999
[421]
GSM138000
[422]
GSM138001
[423]
GSM138002
[424]
GSM138003
[425]
GSM138004
[426]
GSM138005
[427]
GSM138006
[428]
GSM138007
[429]
GSM138008
[430]
GSM138009
[431]
GSM138010
[432]
GSM138011
[433]
GSM138012
[434]
GSM138013
[435]
GSM138014
[436]
GSM138015
[437]
GSM138016
[438]
GSM138017
[439]
GSM138018
[440]
GSM138019
[441]
GSM138020
[442]
GSM138021
[443]
GSM138022
[444]
GSM138023
[445]
GSM138024
[446]
GSM138025
[447]
GSM138026
[448]
GSM138027
[449]
GSM138028
[450]
GSM138029
[451]
GSM138030
[452]
GSM138031
[453]
GSM138032
[454]
GSM138033
[455]
GSM138034
[456]
GSM138035
[457]
GSM138036
[458]
GSM138037
[459]
GSM138038
[460]
GSM138039
[461]
GSM138040
[462]
GSM138041
[463]
GSM138042
[464]
GSM138043
[465]
GSM138044
[466]
GSM138045
[467]
GSM138046
[468]
GSM138047
[469]
GSM138048
[470]
GSM138049
[471]
GSM138050
[472]
GSM138051
[473]
GSM138052
[474]
GSM138053
[475]
GSM138054
[476]
GSM152564
[477]
GSM152565
[478]
GSM152566
[479]
GSM152567
[480]
GSM152568
[481]
GSM152569
[482]
GSM152570
[483]
GSM152571
[484]
GSM152572
[485]
GSM152573
[486]
GSM152574
[487]
GSM152575
[488]
GSM152576
[489]
GSM152577
[490]
GSM152578
[491]
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[492]
GSM152580
[493]
GSM152581
[494]
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[495]
GSM152583
[496]
GSM152584
[497]
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[498]
GSM152586
[499]
GSM152587
[500]
GSM152588
[501]
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[502]
GSM152590
[503]
GSM152591
[504]
GSM152592
[505]
GSM152593
[506]
GSM152594
[507]
GSM152595
[508]
GSM152596
[509]
GSM152597
[510]
GSM152598
[511]
GSM152599
[512]
GSM152600
[513]
GSM152601
[514]
GSM152602
[515]
GSM152603
[516]
GSM152604
[517]
GSM152605
[518]
GSM152606
[519]
GSM152607
[520]
GSM152608
[521]
GSM152609
[522]
GSM152610
[523]
GSM152611
[524]
GSM152612
[525]
GSM152613
[526]
GSM152614
[527]
GSM152615
[528]
GSM152616
[529]
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[530]
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[531]
GSM152619
[532]
GSM152620
[533]
GSM152621
[534]
GSM152622
[535]
GSM152623
[536]
GSM152624
[537]
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[538]
GSM152626
[539]
GSM152627
[540]
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[541]
GSM152629
[542]
GSM152630
[543]
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[544]
GSM152632
[545]
GSM152633
[546]
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[547]
GSM152635
[548]
GSM152636
[549]
GSM152637
[550]
GSM152638
[551]
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[552]
GSM152640
[553]
GSM152641
[554]
GSM152642
[555]
GSM152643
[556]
GSM152644
[557]
GSM152645
[558]
GSM152646
[559]
GSM152647
[560]
GSM152648
[561]
GSM152649
[562]
GSM152650
[563]
GSM152651
[564]
GSM152652
[565]
GSM152653
[566]
GSM152654
[567]
GSM152655
[568]
GSM152656
[569]
GSM152657
[570]
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[571]
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[572]
GSM152660
[573]
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[574]
GSM152662
[575]
GSM152663
[576]
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[577]
GSM152665
[578]
GSM152666
[579]
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[580]
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[581]
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[582]
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[583]
GSM152671
[584]
GSM152672
[585]
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[586]
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[587]
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[588]
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[589]
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[590]
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[591]
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[592]
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[593]
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[594]
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[595]
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[596]
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[597]
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[598]
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[599]
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[600]
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[601]
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[602]
GSM152690
[603]
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[604]
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[605]
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[606]
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[607]
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[608]
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[609]
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[610]
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[611]
GSM152699
[612]
GSM152700
[613]
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[614]
GSM152702
[615]
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[616]
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[617]
GSM152705
[618]
GSM152706
[619]
GSM152707
[620]
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[621]
GSM152709
[622]
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[623]
GSM152711
[624]
GSM152712
[625]
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[626]
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[627]
GSM152715
[628]
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[629]
GSM152717
[630]
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[631]
GSM152719
[632]
GSM152720
[633]
GSM152721
[634]
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[635]
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[636]
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[637]
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[638]
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[639]
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[640]
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[641]
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[642]
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[643]
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[644]
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[645]
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[646]
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[647]
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[648]
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[649]
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[650]
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[651]
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[652]
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[653]
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[654]
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[655]
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[656]
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[657]
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[658]
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[659]
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[660]
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[661]
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[662]
GSM152750
[663]
GSM152751
[664]
GSM152752
[665]
GSM152753
[666]
GSM152754
[667]
GSM152755
[668]
GSM152756
[669]
GSM152757
[670]
GSM152758
[671]
GSM152759
[672]
GSM152760
[673]
GSM152761
[674]
GSM152762
[675]
GSM152763
[676]
GSM152764
[677]
GSM152765
[678]
GSM152766
[679]
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[680]
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[681]
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[682]
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[683]
GSM152771
[684]
GSM152772
[685]
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[686]
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[687]
GSM152775
[688]
GSM152776
[689]
GSM152777
[690]
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[691]
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[692]
GSM152780
[693]
GSM152781
[694]
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[695]
GSM152783
[696]
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[697]
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[698]
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[699]
GSM152787
[700]
GSM152788
[701]
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[702]
GSM152790
[703]
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[704]
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[705]
GSM152793
[706]
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[707]
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[708]
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[709]
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[710]
GSM152798
[711]
GSM152799
[712]
GSM152800
[713]
GSM152801
[714]
GSM152802
[715]
GSM152803
[716]
GSM179778
[717]
GSM179779
[718]
GSM179780
[719]
GSM179781
[720]
GSM179782
[721]
GSM179783
[722]
GSM179784
[723]
GSM179785
[724]
GSM179786
[725]
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[726]
GSM179788
[727]
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[728]
GSM179790
[729]
GSM179791
[730]
GSM179792
[731]
GSM179793
[732]
GSM179794
[733]
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[734]
GSM179796
[735]
GSM179797
[736]
GSM179798
[737]
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[738]
GSM179800
[739]
GSM179801
[740]
GSM179802
[741]
GSM179803
[742]
GSM179804
[743]
GSM179805
[744]
GSM179806
[745]
GSM179807
[746]
GSM179808
[747]
GSM179809
[748]
GSM179810
[749]
GSM179811
[750]
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[751]
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[752]
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[753]
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[754]
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[755]
GSM179817
[756]
GSM179818
[757]
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[758]
GSM179820
[759]
GSM179821
[760]
GSM179822
[761]
GSM179823
[762]
GSM179824
[763]
GSM179825
[764]
GSM179826
[765]
GSM179827
[766]
GSM179828
[767]
GSM179829
[768]
GSM179830
[769]
GSM179831
[770]
GSM179832
[771]
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[772]
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[773]
GSM179835
[774]
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[775]
GSM179837
[776]
GSM179838
[777]
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[778]
GSM179840
[779]
GSM179841
[780]
GSM179842
[781]
GSM179843
[782]
GSM179844
[783]
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[784]
GSM179846
[785]
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[786]
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[787]
GSM179849
[788]
GSM179850
[789]
GSM179851
[790]
GSM179852
[791]
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[792]
GSM179854
[793]
GSM179855
[794]
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[795]
GSM179857
[796]
GSM179858
[797]
GSM179859
[798]
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[799]
GSM179861
[800]
GSM179862
[801]
GSM179863
[802]
GSM179864
[803]
GSM179865
[804]
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[805]
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[806]
GSM179868
[807]
GSM179869
[808]
GSM179870
[809]
GSM179871
[810]
GSM179872
[811]
GSM179873
[812]
GSM179874
[813]
GSM179875
[814]
GSM179876
[815]
GSM179877
[816]
GSM179878
[817]
GSM179879
[818]
GSM179880
[819]
GSM179881
[820]
GSM179882
[821]
GSM179883
[822]
GSM179884
[823]
GSM179885
[824]
GSM179886
[825]
GSM179887
[826]
GSM179888
[827]
GSM179889
[828]
GSM179890
[829]
GSM179891
[830]
GSM179892
[831]
GSM179893
[832]
GSM179894
[833]
GSM179895
[834]
GSM179896
[835]
GSM179897
[836]
GSM179898
[837]
GSM179899
[838]
GSM179900
[839]
GSM179901
[840]
GSM179902
[841]
GSM179903
[842]
GSM179904
[843]
GSM179905
[844]
GSM179906
[845]
GSM179907
[846]
GSM179908
[847]
GSM179909
[848]
GSM179910
[849]
GSM179911
[850]
GSM179912
[851]
GSM179913
[852]
GSM179914
[853]
GSM179915
[854]
GSM179916
[855]
GSM179917
[856]
GSM179918
[857]
GSM179919
[858]
GSM179920
[859]
GSM179921
[860]
GSM179922
[861]
GSM179923
[862]
GSM179924
[863]
GSM179925
[864]
GSM179926
[865]
GSM179927
[866]
GSM179928
[867]
GSM179929
[868]
GSM179930
[869]
GSM179931
[870]
GSM179932
[871]
GSM179933
[872]
GSM179934
[873]
GSM179935
[874]
GSM179936
[875]
GSM179937
[876]
GSM179938
[877]
GSM179939
[878]
GSM179940
[879]
GSM179941
[880]
GSM179942
[881]
GSM179943
[882]
GSM179944
[883]
GSM179945
[884]
GSM179946
[885]
GSM179947
[886]
GSM179948
[887]
GSM179949
[888]
GSM179950
[889]
GSM179951
[890]
GSM179952
[891]
GSM179953
[892]
GSM179954
[893]
GSM179955
[894]
GSM179956
[895]
GSM179957
[896]
GSM203622
[897]
GSM203623
[898]
GSM203624
[899]
GSM203625
[900]
GSM203626
[901]
GSM203627
[902]
GSM203628
[903]
GSM203629
[904]
GSM203630
[905]
GSM203631
[906]
GSM203632
[907]
GSM203633
[908]
GSM203634
[909]
GSM203635
[910]
GSM203636
[911]
GSM203637
[912]
GSM203638
[913]
GSM203639
[914]
GSM203640
[915]
GSM203641
[916]
GSM203642
[917]
GSM203643
[918]
GSM203644
[919]
GSM203645
[920]
GSM203646
[921]
GSM203647
[922]
GSM203648
[923]
GSM203649
[924]
GSM203650
[925]
GSM203651
[926]
GSM203652
[927]
GSM203653
[928]
GSM203654
[929]
GSM203655
[930]
GSM203656
[931]
GSM203657
[932]
GSM203658
[933]
GSM203659
[934]
GSM203660
[935]
GSM203661
[936]
GSM203662
[937]
GSM203663
[938]
GSM203664
[939]
GSM203665
[940]
GSM203666
[941]
GSM203667
[942]
GSM203668
[943]
GSM203669
[944]
GSM203670
[945]
GSM203671
[946]
GSM203672
[947]
GSM203673
[948]
GSM203674
[949]
GSM203675
[950]
GSM203676
[951]
GSM203677
[952]
GSM203678
[953]
GSM203679
[954]
GSM203680
[955]
GSM203681
[956]
GSM203682
[957]
GSM203683
[958]
GSM203684
[959]
GSM203685
[960]
GSM203686
[961]
GSM203687
[962]
GSM203688
[963]
GSM203689
[964]
GSM203690
[965]
GSM203691
[966]
GSM203692
[967]
GSM203693
[968]
GSM203694
[969]
GSM203695
[970]
GSM203696
[971]
GSM203697
[972]
GSM203698
[973]
GSM203699
[974]
GSM203700
[975]
GSM203701
[976]
GSM203702
[977]
GSM203703
[978]
GSM203704
[979]
GSM203705
[980]
GSM203706
[981]
GSM203707
[982]
GSM203708
[983]
GSM203709
[984]
GSM203710
[985]
GSM203711
[986]
GSM203712
[987]
GSM203713
[988]
GSM203714
[989]
GSM203715
[990]
GSM203716
[991]
GSM203717
[992]
GSM203718
[993]
GSM203719
[994]
GSM203720
[995]
GSM203721
[996]
GSM203722
[997]
GSM203723
[998]
GSM203724
[999]
GSM203725
[1000]
GSM203726
[1001]
GSM203727
[1002]
GSM203728
[1003]
GSM203729
[1004]
GSM203730
[1005]
GSM203731
[1006]
GSM203732
[1007]
GSM203733
[1008]
GSM203734
[1009]
GSM203735
[1010]
GSM203736
[1011]
GSM203737
[1012]
GSM203738
[1013]
GSM203739
[1014]
GSM203740
[1015]
GSM203741
[1016]
GSM203742
[1017]
GSM203743
[1018]
GSM203744
[1019]
GSM203745
[1020]
GSM203746
[1021]
GSM203747
[1022]
GSM203748
[1023]
GSM203749
[1024]
GSM203750
[1025]
GSM203751
[1026]
GSM203752
[1027]
GSM203753
[1028]
GSM203754
[1029]
GSM203755
[1030]
GSM203756
[1031]
GSM203757
[1032]
GSM203758
[1033]
GSM203759
[1034]
GSM203760
[1035]
GSM203761
[1036]
GSM203762
[1037]
GSM203763
[1038]
GSM203764
[1039]
GSM203765
[1040]
GSM203766
[1041]
GSM203767
[1042]
GSM203768
[1043]
GSM203769
[1044]
GSM203770
[1045]
GSM203771
[1046]
GSM203772
[1047]
GSM203773
[1048]
GSM203774
[1049]
GSM203775
[1050]
GSM203776
[1051]
GSM203777
[1052]
GSM203778
[1053]
GSM203779
[1054]
GSM203780
[1055]
GSM203781
[1056]
GSM203782
[1057]
GSM203783
[1058]
GSM203784
[1059]
GSM203785
[1060]
GSM203786
[1061]
GSM203787
[1062]
GSM203788
[1063]
GSM203789
[1064]
GSM203790
[1065]
GSM203791
[1066]
GSM203792
[1067]
GSM203793
[1068]
GSM203794
[1069]
GSM203795
[1070]
GSM203796
[1071]
GSM203797
[1072]
GSM203798
[1073]
GSM203799
[1074]
GSM203800
[1075]
GSM203801
[1076]
GSM231868
[1077]
GSM231869
[1078]
GSM231870
[1079]
GSM231871
[1080]
GSM231872
[1081]
GSM231873
[1082]
GSM231874
[1083]
GSM231875
[1084]
GSM231876
[1085]
GSM231877
[1086]
GSM231878
[1087]
GSM231879
[1088]
GSM231880
[1089]
GSM231881
[1090]
GSM231882
[1091]
GSM231883
[1092]
GSM231884
[1093]
GSM231885
[1094]
GSM231886
[1095]
GSM231887
[1096]
GSM231888
[1097]
GSM231889
[1098]
GSM231890
[1099]
GSM231891
[1100]
GSM231892
[1101]
GSM231893
[1102]
GSM231894
[1103]
GSM231895
[1104]
GSM231896
[1105]
GSM231897
[1106]
GSM231898
[1107]
GSM231899
[1108]
GSM231900
[1109]
GSM231901
[1110]
GSM231902
[1111]
GSM231903
[1112]
GSM231904
[1113]
GSM231905
[1114]
GSM231906
[1115]
GSM231907
[1116]
GSM231908
[1117]
GSM231909
[1118]
GSM231910
[1119]
GSM231911
[1120]
GSM231912
[1121]
GSM231913
[1122]
GSM231914
[1123]
GSM231915
[1124]
GSM231916
[1125]
GSM231917
[1126]
GSM231918
[1127]
GSM231919
[1128]
GSM231920
[1129]
GSM231921
[1130]
GSM231922
[1131]
GSM231923
[1132]
GSM231924
[1133]
GSM231925
[1134]
GSM231926
[1135]
GSM231927
[1136]
GSM231928
[1137]
GSM231929
[1138]
GSM231930
[1139]
GSM231931
[1140]
GSM231932
[1141]
GSM231933
[1142]
GSM231934
[1143]
GSM231935
[1144]
GSM231936
[1145]
GSM231937
[1146]
GSM231938
[1147]
GSM231939
[1148]
GSM231940
[1149]
GSM231941
[1150]
GSM231942
[1151]
GSM231943
[1152]
GSM231944
[1153]
GSM231945
[1154]
GSM231946
[1155]
GSM231947
[1156]
GSM231948
[1157]
GSM231949
[1158]
GSM231950
[1159]
GSM231951
[1160]
GSM231952
[1161]
GSM231953
[1162]
GSM231954
[1163]
GSM231955
[1164]
GSM231956
[1165]
GSM231957
[1166]
GSM231958
[1167]
GSM231959
[1168]
GSM231960
[1169]
GSM231961
[1170]
GSM231962
[1171]
GSM231963
[1172]
GSM231964
[1173]
GSM231965
[1174]
GSM231966
[1175]
GSM231967
[1176]
GSM231968
[1177]
GSM231969
[1178]
GSM231970
[1179]
GSM231971
[1180]
GSM231972
[1181]
GSM231973
[1182]
GSM231974
[1183]
GSM231975
[1184]
GSM231976
[1185]
GSM231977
[1186]
GSM231978
[1187]
GSM231979
[1188]
GSM231980
[1189]
GSM231981
[1190]
GSM231982
[1191]
GSM231983
[1192]
GSM231984
[1193]
GSM231985
[1194]
GSM231986
[1195]
GSM231987
[1196]
GSM231988
[1197]
GSM231989
[1198]
GSM231990
[1199]
GSM231991
[1200]
GSM231992
[1201]
GSM277677
[1202]
GSM277678
[1203]
GSM277679
[1204]
GSM277680
[1205]
GSM277681
[1206]
GSM277682
[1207]
GSM277683
[1208]
GSM277684
[1209]
GSM277685
[1210]
GSM277686
[1211]
GSM277687
[1212]
GSM277688
[1213]
GSM277689
[1214]
GSM277690
[1215]
GSM277691
[1216]
GSM277692
[1217]
GSM277693
[1218]
GSM277694
[1219]
GSM277695
[1220]
GSM277696
[1221]
GSM277697
[1222]
GSM277698
[1223]
GSM277699
[1224]
GSM277700
[1225]
GSM277701
[1226]
GSM277702
[1227]
GSM277703
[1228]
GSM277704
[1229]
GSM277705
[1230]
GSM277706
[1231]
GSM277707
[1232]
GSM277708
[1233]
GSM277709
[1234]
GSM277710
[1235]
GSM277711
[1236]
GSM277712
[1237]
GSM277713
[1238]
GSM277714
[1239]
GSM277715
[1240]
GSM277716
[1241]
GSM277717
[1242]
GSM277718
[1243]
GSM277719
[1244]
GSM277720
[1245]
GSM277721
[1246]
GSM277722
[1247]
GSM277723
[1248]
GSM277724
[1249]
GSM277725
[1250]
GSM277726
[1251]
GSM277727
[1252]
GSM277728
[1253]
GSM277729
[1254]
GSM277730
[1255]
GSM277731
[1256]
GSM277732
[1257]
GSM277733
[1258]
GSM277734
[1259]
GSM277735
[1260]
GSM277736
[1261]
GSM277737
[1262]
GSM277738
[1263]
GSM301651
[1264]
GSM301652
[1265]
GSM301653
[1266]
GSM301654
[1267]
GSM301655
[1268]
GSM301656
[1269]
GSM301657
[1270]
GSM301658
[1271]
GSM301659
[1272]
GSM301660
[1273]
GSM301661
[1274]
GSM301662
[1275]
GSM301663
[1276]
GSM301664
[1277]
GSM301665
[1278]
GSM301666
[1279]
GSM301667
[1280]
GSM301668
[1281]
GSM301669
[1282]
GSM301670
[1283]
GSM301671
[1284]
GSM301672
[1285]
GSM301673
[1286]
GSM301674
[1287]
GSM301675
[1288]
GSM301676
[1289]
GSM301677
[1290]
GSM301678
[1291]
GSM301679
[1292]
GSM301680
[1293]
GSM301681
[1294]
GSM301682
[1295]
GSM301683
[1296]
GSM301684
[1297]
GSM301685
[1298]
GSM301686
[1299]
GSM301687
[1300]
GSM301688
[1301]
GSM301689
[1302]
GSM301690
[1303]
GSM301691
[1304]
GSM301692
[1305]
GSM301693
[1306]
GSM301694
[1307]
GSM301695
[1308]
GSM301696
[1309]
GSM301697
[1310]
GSM301698
[1311]
GSM301699
[1312]
GSM301700
[1313]
GSM301701
[1314]
GSM301702
[1315]
GSM301703
[1316]
GSM301704
[1317]
GSM301705
[1318]
GSM301706
[1319]
GSM301707
[1320]
GSM301708
[1321]
GSM301709
[1322]
GSM301710
[1323]
GSM301711
[1324]
GSM301712
[1325]
GSM325786
[1326]
GSM325787
[1327]
GSM325788
[1328]
GSM325789
[1329]
GSM325790
[1330]
GSM325791
[1331]
GSM325792
[1332]
GSM325793
[1333]
GSM325794
[1334]
GSM325795
[1335]
GSM325796
[1336]
GSM325797
[1337]
GSM325798
[1338]
GSM325799
[1339]
GSM325800
[1340]
GSM325801
[1341]
GSM325802
[1342]
GSM325803
[1343]
GSM325804
[1344]
GSM325805
[1345]
GSM325806
[1346]
GSM325807
[1347]
GSM325808
[1348]
GSM325809
[1349]
GSM325810
[1350]
GSM325811
[1351]
GSM325812
[1352]
GSM325813
[1353]
GSM325814
[1354]
GSM325815
[1355]
GSM325816
[1356]
GSM325817
[1357]
GSM325818
[1358]
GSM325819
[1359]
GSM325820
[1360]
GSM325821
[1361]
GSM325822
[1362]
GSM325823
[1363]
GSM325824
[1364]
GSM325825
[1365]
GSM325826
[1366]
GSM325827
[1367]
GSM325828
[1368]
GSM325829
[1369]
GSM325830
[1370]
GSM325831
[1371]
GSM325832
[1372]
GSM325833
[1373]
GSM325834
[1374]
GSM325835
[1375]
GSM325836
[1376]
GSM325837
[1377]
GSM325838
[1378]
GSM325839
[1379]
GSM325840
[1380]
GSM325841
[1381]
GSM325842
[1382]
GSM325843
[1383]
GSM325844
[1384]
GSM325845
[1385]
GSM353881
[1386]
GSM353882
[1387]
GSM353883
[1388]
GSM353884
[1389]
GSM353885
[1390]
GSM353886
[1391]
GSM353887
[1392]
GSM353888
[1393]
GSM353889
[1394]
GSM353890
[1395]
GSM353891
[1396]
GSM353892
[1397]
GSM353893
[1398]
GSM353894
[1399]
GSM353895
[1400]
GSM353896
[1401]
GSM353897
[1402]
GSM353898
[1403]
GSM353899
[1404]
GSM353900
[1405]
GSM353901
[1406]
GSM353902
[1407]
GSM353903
[1408]
GSM353904
[1409]
GSM353905
[1410]
GSM353906
[1411]
GSM353907
[1412]
GSM353908
[1413]
GSM353909
[1414]
GSM353910
[1415]
GSM353911
[1416]
GSM353912
[1417]
GSM353913
[1418]
GSM353914
[1419]
GSM353915
[1420]
GSM353916
[1421]
GSM353917
[1422]
GSM353918
[1423]
GSM353919
[1424]
GSM353920
[1425]
GSM353921
[1426]
GSM353922
[1427]
GSM353923
[1428]
GSM353924
[1429]
GSM353925
[1430]
GSM353926
[1431]
GSM353927
[1432]
GSM353928
[1433]
GSM353929
[1434]
GSM353930
[1435]
GSM353931
[1436]
GSM353932
[1437]
GSM353933
[1438]
GSM353934
[1439]
GSM353935
[1440]
GSM353936
[1441]
GSM353937
[1442]
GSM353938
[1443]
GSM353939
[1444]
GSM353940
[1445]
GSM353941
[1446]
GSM353942
[1447]
GSM353943
[1448]
GSM38051
[1449]
GSM38052
[1450]
GSM38053
[1451]
GSM38054
[1452]
GSM38055
[1453]
GSM38056
[1454]
GSM38057
[1455]
GSM38058
[1456]
GSM38059
[1457]
GSM38060
[1458]
GSM38061
[1459]
GSM38062
[1460]
GSM38063
[1461]
GSM38064
[1462]
GSM38065
[1463]
GSM38066
[1464]
GSM38067
[1465]
GSM38068
[1466]
GSM38069
[1467]
GSM38070
[1468]
GSM38071
[1469]
GSM38072
[1470]
GSM38073
[1471]
GSM38074
[1472]
GSM38075
[1473]
GSM38076
[1474]
GSM38077
[1475]
GSM38078
[1476]
GSM38079
[1477]
GSM38080
[1478]
GSM38081
[1479]
GSM38082
[1480]
GSM38083
[1481]
GSM38084
[1482]
GSM38085
[1483]
GSM38086
[1484]
GSM38087
[1485]
GSM38088
[1486]
GSM38089
[1487]
GSM38090
[1488]
GSM38091
[1489]
GSM38092
[1490]
GSM38093
[1491]
GSM38094
[1492]
GSM38095
[1493]
GSM38096
[1494]
GSM38097
[1495]
GSM38098
[1496]
GSM38099
[1497]
GSM38100
[1498]
GSM38101
[1499]
GSM38102
[1500]
GSM38103
[1501]
GSM38104
[1502]
GSM38105
[1503]
GSM38106
[1504]
GSM38107
[1505]
GSM38108
[1506]
GSM38109
[1507]
GSM38110
[1508]
GSM46814
[1509]
GSM46815
[1510]
GSM46816
[1511]
GSM46817
[1512]
GSM46818
[1513]
GSM46819
[1514]
GSM46820
[1515]
GSM46821
[1516]
GSM46822
[1517]
GSM46823
[1518]
GSM46824
[1519]
GSM46825
[1520]
GSM46826
[1521]
GSM46827
[1522]
GSM46828
[1523]
GSM46829
[1524]
GSM46830
[1525]
GSM46831
[1526]
GSM46832
[1527]
GSM46833
[1528]
GSM46834
[1529]
GSM46835
[1530]
GSM46836
[1531]
GSM46837
[1532]
GSM46838
[1533]
GSM46839
[1534]
GSM46840
[1535]
GSM46841
[1536]
GSM46842
[1537]
GSM46843
[1538]
GSM46844
[1539]
GSM46845
[1540]
GSM46846
[1541]
GSM46847
[1542]
GSM46848
[1543]
GSM46849
[1544]
GSM46850
[1545]
GSM46851
[1546]
GSM46852
[1547]
GSM46853
[1548]
GSM46854
[1549]
GSM46855
[1550]
GSM46856
[1551]
GSM46857
[1552]
GSM46858
[1553]
GSM46859
[1554]
GSM46860
[1555]
GSM46861
[1556]
GSM46862
[1557]
GSM46863
[1558]
GSM46864
[1559]
GSM46865
[1560]
GSM46866
[1561]
GSM46867
[1562]
GSM46868
[1563]
GSM46869
[1564]
GSM46870
[1565]
GSM46871
[1566]
GSM46872
[1567]
GSM46873
[1568]
GSM46874
[1569]
GSM46875
[1570]
GSM46876
[1571]
GSM46877
[1572]
GSM46878
[1573]
GSM46879
[1574]
GSM46880
[1575]
GSM46881
[1576]
GSM46882
[1577]
GSM46883
[1578]
GSM46884
[1579]
GSM46885
[1580]
GSM46886
[1581]
GSM46887
[1582]
GSM46888
[1583]
GSM46889
[1584]
GSM46890
[1585]
GSM46891
[1586]
GSM46892
[1587]
GSM46893
[1588]
GSM46894
[1589]
GSM46895
[1590]
GSM46896
[1591]
GSM46897
[1592]
GSM46898
[1593]
GSM46899
[1594]
GSM46900
[1595]
GSM46901
[1596]
GSM46902
[1597]
GSM46903
[1598]
GSM46904
[1599]
GSM46905
[1600]
GSM46906
[1601]
GSM46907
[1602]
GSM46908
[1603]
GSM46909
[1604]
GSM46910
[1605]
GSM46911
[1606]
GSM46912
[1607]
GSM46913
[1608]
GSM46914
[1609]
GSM46915
[1610]
GSM46916
[1611]
GSM46917
[1612]
GSM46918
[1613]
GSM46919
[1614]
GSM46920
[1615]
GSM46921
[1616]
GSM46922
[1617]
GSM46923
[1618]
GSM46924
[1619]
GSM46925
[1620]
GSM46926
[1621]
GSM46927
[1622]
GSM46928
[1623]
GSM46929
[1624]
GSM46930
[1625]
GSM46931
[1626]
GSM46932
[1627]
GSM46933
[1628]
GSM46934
[1629]
GSM46935
[1630]
GSM46936
[1631]
GSM46937
[1632]
GSM46938
[1633]
GSM46939
[1634]
GSM46940
[1635]
GSM46941
[1636]
GSM46942
[1637]
GSM46943
[1638]
GSM46944
[1639]
GSM46945
[1640]
GSM46946
[1641]
GSM46947
[1642]
GSM46948
[1643]
GSM46949
[1644]
GSM46950
[1645]
GSM46951
[1646]
GSM46952
[1647]
GSM46953
[1648]
GSM46954
[1649]
GSM46955
[1650]
GSM46956
[1651]
GSM46957
[1652]
GSM46958
[1653]
GSM46959
[1654]
GSM46960
[1655]
GSM46961
[1656]
GSM46962
[1657]
GSM46963
[1658]
GSM46964
[1659]
GSM46965
[1660]
GSM46966
[1661]
GSM46967
[1662]
GSM46968
[1663]
GSM46969
[1664]
GSM46970
[1665]
GSM46971
[1666]
GSM46972
[1667]
GSM46973
[1668]
GSM46974
[1669]
GSM46975
[1670]
GSM46976
[1671]
GSM53026
[1672]
GSM53027
[1673]
GSM53028
[1674]
GSM53029
[1675]
GSM53030
[1676]
GSM53031
[1677]
GSM53032
[1678]
GSM53033
[1679]
GSM53034
[1680]
GSM53035
[1681]
GSM53036
[1682]
GSM53037
[1683]
GSM53038
[1684]
GSM53039
[1685]
GSM53040
[1686]
GSM53041
[1687]
GSM53042
[1688]
GSM53043
[1689]
GSM53044
[1690]
GSM53045
[1691]
GSM53046
[1692]
GSM53047
[1693]
GSM53048
[1694]
GSM53049
[1695]
GSM53050
[1696]
GSM53051
[1697]
GSM53052
[1698]
GSM53053
[1699]
GSM53054
[1700]
GSM53055
[1701]
GSM53056
[1702]
GSM53057
[1703]
GSM53058
[1704]
GSM53059
[1705]
GSM53060
[1706]
GSM53061
[1707]
GSM53062
[1708]
GSM53063
[1709]
GSM53064
[1710]
GSM53065
[1711]
GSM53066
[1712]
GSM53067
[1713]
GSM53068
[1714]
GSM53069
[1715]
GSM53070
[1716]
GSM53071
[1717]
GSM53072
[1718]
GSM53073
[1719]
GSM53074
[1720]
GSM53075
[1721]
GSM53076
[1722]
GSM53077
[1723]
GSM53078
[1724]
GSM53079
[1725]
GSM53080
[1726]
GSM53081
[1727]
GSM53082
[1728]
GSM53083
[1729]
GSM53084
[1730]
GSM53085
[1731]
GSM53086
[1732]
GSM53087
[1733]
GSM53088
[1734]
GSM53089
[1735]
GSM53090
[1736]
GSM53091
[1737]
GSM53092
[1738]
GSM53093
[1739]
GSM53094
[1740]
GSM53095
[1741]
GSM53096
[1742]
GSM53097
[1743]
GSM53098
[1744]
GSM53099
[1745]
GSM53100
[1746]
GSM53101
[1747]
GSM53102
[1748]
GSM53103
[1749]
GSM53104
[1750]
GSM53105
[1751]
GSM53106
[1752]
GSM53107
[1753]
GSM53108
[1754]
GSM53109
[1755]
GSM53110
[1756]
GSM53111
[1757]
GSM53112
[1758]
GSM53113
[1759]
GSM53114
[1760]
GSM53115
[1761]
GSM53116
[1762]
GSM53117
[1763]
GSM53118
[1764]
GSM53119
[1765]
GSM53120
[1766]
GSM53121
[1767]
GSM53122
[1768]
GSM53123
[1769]
GSM53124
[1770]
GSM53125
[1771]
GSM53126
[1772]
GSM53127
[1773]
GSM53128
[1774]
GSM53129
[1775]
GSM53130
[1776]
GSM53131
[1777]
GSM53132
[1778]
GSM53133
[1779]
GSM53134
[1780]
GSM53135
[1781]
GSM53136
[1782]
GSM53137
[1783]
GSM53138
[1784]
GSM53139
[1785]
GSM53140
[1786]
GSM53141
[1787]
GSM53142
[1788]
GSM53143
[1789]
GSM53144
[1790]
GSM53145
[1791]
GSM53146
[1792]
GSM53147
[1793]
GSM53148
[1794]
GSM53149
[1795]
GSM53150
[1796]
GSM53151
[1797]
GSM53152
[1798]
GSM53153
[1799]
GSM53154
[1800]
GSM53155
[1801]
GSM53156
[1802]
GSM53157
[1803]
GSM53158
[1804]
GSM53159
[1805]
GSM53160
[1806]
GSM53161
[1807]
GSM53162
[1808]
GSM53163
[1809]
GSM53164
[1810]
GSM53165
[1811]
GSM53166
[1812]
GSM53167
[1813]
GSM53168
[1814]
GSM53169
[1815]
GSM53170
[1816]
GSM53171
[1817]
GSM53172
[1818]
GSM53173
[1819]
GSM53174
[1820]
GSM53175
[1821]
GSM53176
[1822]
GSM53177
[1823]
GSM53178
[1824]
GSM53179
[1825]
GSM53180
[1826]
GSM53181
[1827]
GSM53182
[1828]
GSM53183
[1829]
GSM53184
[1830]
GSM53185
[1831]
GSM53186
[1832]
GSM53187
[1833]
GSM53188
[1834]
GSM53189
[1835]
GSM76486
[1836]
GSM76487
[1837]
GSM76488
[1838]
GSM76489
[1839]
GSM76490
[1840]
GSM76491
[1841]
GSM76492
[1842]
GSM76493
[1843]
GSM76494
[1844]
GSM76495
[1845]
GSM76496
[1846]
GSM76497
[1847]
GSM76498
[1848]
GSM76499
[1849]
GSM76500
[1850]
GSM76501
[1851]
GSM76502
[1852]
GSM76503
[1853]
GSM76504
[1854]
GSM76505
[1855]
GSM76506
[1856]
GSM76507
[1857]
GSM76508
[1858]
GSM76509
[1859]
GSM76510
[1860]
GSM76511
[1861]
GSM76512
[1862]
GSM76513
[1863]
GSM76514
[1864]
GSM76515
[1865]
GSM76516
[1866]
GSM76517
[1867]
GSM76518
[1868]
GSM76519
[1869]
GSM76520
[1870]
GSM76521
[1871]
GSM76522
[1872]
GSM76523
[1873]
GSM76524
[1874]
GSM76525
[1875]
GSM76526
[1876]
GSM76527
[1877]
GSM76528
[1878]
GSM76529
[1879]
GSM76530
[1880]
GSM76531
[1881]
GSM76532
[1882]
GSM76533
[1883]
GSM76534
[1884]
GSM76535
[1885]
GSM76536
[1886]
GSM76537
[1887]
GSM76538
[1888]
GSM76539
[1889]
GSM76540
[1890]
GSM76541
[1891]
GSM76542
[1892]
GSM76543
[1893]
GSM76544
[1894]
GSM76545
[1895]
GSM76546
[1896]
GSM76547
[1897]
GSM76548
[1898]
GSM76549
[1899]
GSM76550
[1900]
GSM76551
[1901]
GSM76552
[1902]
GSM76553
[1903]
GSM76554
[1904]
GSM76555
[1905]
GSM76556
[1906]
GSM76557
[1907]
GSM76558
[1908]
GSM76559
[1909]
GSM76560
[1910]
GSM76561
[1911]
GSM76562
[1912]
GSM76563
[1913]
GSM76564
[1914]
GSM76565
[1915]
GSM76566
[1916]
GSM76567
[1917]
GSM76568
[1918]
GSM76569
[1919]
GSM76570
[1920]
GSM76571
[1921]
GSM76572
[1922]
GSM76573
[1923]
GSM76574
[1924]
GSM76575
[1925]
GSM76576
[1926]
GSM76577
[1927]
GSM76578
[1928]
GSM76579
[1929]
GSM76580
[1930]
GSM76581
[1931]
GSM76582
[1932]
GSM76583
[1933]
GSM76584
[1934]
GSM76585
[1935]
GSM76586
[1936]
GSM76587
[1937]
GSM76588
[1938]
GSM76590
[1939]
GSM76591
[1940]
GSM76592
[1941]
GSM76593
[1942]
GSM76594
[1943]
GSM76595
[1944]
GSM76596
[1945]
GSM76597
[1946]
GSM76598
[1947]
GSM76599
[1948]
GSM76600
[1949]
GSM76601
[1950]
GSM76602
[1951]
GSM76603
[1952]
GSM76604
[1953]
GSM76605
[1954]
GSM76606
[1955]
GSM76607
[1956]
GSM76608
[1957]
GSM76609
[1958]
GSM76610
[1959]
GSM76611
[1960]
GSM76612
[1961]
GSM76613
[1962]
GSM76614
[1963]
GSM76615
[1964]
GSM76616
[1965]
GSM76617
[1966]
GSM76618
[1967]
GSM76619
[1968]
GSM76620
[1969]
GSM76621
[1970]
GSM76622
[1971]
GSM76623
[1972]
GSM76624
[1973]
GSM76625
[1974]
GSM76626
[1975]
GSM76627
[1976]
GSM76628
[1977]
GSM76629
[1978]
GSM76630
[1979]
GSM76631
[1980]
GSM76632
[1981]
GSM76633
[1982]
GSM76634
[1983]
GSM76635
[1984]
GSM76636
[1985]
GSM76637
[1986]
GSM76638
[1987]
GSM76639
[1988]
GSM76640
[1989]
GSM76641
[1990]
GSM76642
[1991]
GSM76643
[1992]
GSM76644
[1993]
GSM76645
[1994]
GSM76646
[1995]
GSM76647
[1996]
GSM76648
[1997]
GSM76649
[1998]
GSM88945
[1999]
GSM88946
[2000]
GSM88947
[2001]
GSM88948
[2002]
GSM88949
[2003]
GSM88950
[2004]
GSM88951
[2005]
GSM88952
[2006]
GSM88953
[2007]
GSM88954
[2008]
GSM88955
[2009]
GSM88956
[2010]
GSM88957
[2011]
GSM88958
[2012]
GSM88959
[2013]
GSM88960
[2014]
GSM88961
[2015]
GSM88962
[2016]
GSM88963
[2017]
GSM88964
[2018]
GSM88965
[2019]
GSM88966
[2020]
GSM88967
[2021]
GSM88968
[2022]
GSM88969
[2023]
GSM88970
[2024]
GSM88971
[2025]
GSM88972
[2026]
GSM88973
[2027]
GSM88974
[2028]
GSM88975
[2029]
GSM88976
[2030]
GSM88977
[2031]
GSM88978
[2032]
GSM88979
[2033]
GSM88980
[2034]
GSM88981
[2035]
GSM88982
[2036]
GSM88983
[2037]
GSM88984
[2038]
GSM88985
[2039]
GSM88986
[2040]
GSM88987
[2041]
GSM88988
[2042]
GSM88989
[2043]
GSM88990
[2044]
GSM88991
[2045]
GSM88992
[2046]
GSM88993
[2047]
GSM88994
[2048]
GSM88995
[2049]
GSM88996
[2050]
GSM88997
[2051]
GSM88998
[2052]
GSM88999
[2053]
GSM89000
[2054]
GSM89001
[2055]
GSM89002
[2056]
GSM89003
[2057]
GSM89004
[2058]
GSM89005
[2059]
GSM89006
[2060]
GSM89007
[2061]
GSM89008
[2062]
GSM89009
[2063]
GSM89010
[2064]
GSM89011
[2065]
GSM89012
[2066]
GSM89013
[2067]
GSM89014
[2068]
GSM89015
[2069]
GSM89016
[2070]
GSM89017
[2071]
GSM89018
[2072]
GSM89019
[2073]
GSM89020
[2074]
GSM89021
[2075]
GSM89022
[2076]
GSM89023
[2077]
GSM89024
[2078]
GSM89025
[2079]
GSM89026
[2080]
GSM89027
[2081]
GSM89028
[2082]
GSM89029
[2083]
GSM89030
[2084]
GSM89031
[2085]
GSM89032
[2086]
GSM89033
[2087]
GSM89034
[2088]
GSM89035
[2089]
GSM89036
[2090]
GSM89037
[2091]
GSM89038
[2092]
GSM89039
[2093]
GSM89040
[2094]
GSM89041
[2095]
GSM89042
[2096]
GSM89043
[2097]
GSM89044
[2098]
GSM89045
[2099]
GSM89046
[2100]
GSM89047
[2101]
GSM89048
[2102]
GSM89049
[2103]
GSM89050
[2104]
GSM89051
[2105]
GSM89052
[2106]
GSM89053
[2107]
GSM89054
[2108]
GSM89055
[2109]
GSM89056
[2110]
GSM89057
[2111]
GSM89058
[2112]
GSM89059
[2113]
GSM89060
[2114]
GSM89061
[2115]
GSM89062
[2116]
GSM89063
[2117]
GSM89064
[2118]
GSM89065
[2119]
GSM89066
[2120]
GSM89067
[2121]
GSM89068
[2122]
GSM89069
[2123]
GSM89070
[2124]
GSM89071
[2125]
GSM89072
[2126]
GSM89073
[2127]
GSM89074
[2128]
GSM89075
[2129]
GSM89076
[2130]
GSM89077
[2131]
GSM89078
[2132]
GSM89079
[2133]
GSM89080
[2134]
GSM89081
[2135]
GSM89082
[2136]
GSM89083
[2137]
GSM89084
[2138]
GSM89085
[2139]
GSM89086
[2140]
GSM89087
[2141]
GSM89088
[2142]
GSM89089
[2143]
GSM89090
[2144]
GSM89091
[2145]
GSM89092
[2146]
GSM89093
[2147]
GSM89094
[2148]
GSM89095
[2149]
GSM89096
[2150]
GSM89097
[2151]
GSM89098
[2152]
GSM89099
[2153]
GSM89100
[2154]
GSM89101
[2155]
GSM89102
[2156]
GSM89103
[2157]
GSM89104
sample_count
2158
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Expression Project for Oncology (expO)
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[4] object · 15 fields
id
data:geo:GSE24152
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24152
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE24152
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 17 items
[0]
GSM594412
[1]
GSM594413
[2]
GSM594414
[3]
GSM594415
[4]
GSM594416
[5]
GSM594417
[6]
GSM594418
[7]
GSM594419
[8]
GSM594420
[9]
GSM594421
[10]
GSM594422
[11]
GSM594423
[12]
GSM594424
[13]
GSM594425
[14]
GSM594426
[15]
GSM594427
[16]
GSM594428
sample_count
17
group_sizes
null
group_sizes_basis
null
platform
6791
taxon
Homo sapiens
title
Comparative Gene Expression Profiling Analysis of Urothelial Carcinoma of Renal Pelvis and Bladder
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[5] object · 15 fields
id
data:geo:GSE30522
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30522
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE30522
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 17 items
[0]
GSM756934
[1]
GSM756935
[2]
GSM756936
[3]
GSM756937
[4]
GSM756938
[5]
GSM756939
[6]
GSM756940
[7]
GSM756941
[8]
GSM756942
[9]
GSM756943
[10]
GSM756944
[11]
GSM756945
[12]
GSM756946
[13]
GSM756947
[14]
GSM756948
[15]
GSM756949
[16]
GSM756950
sample_count
17
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Transcriptomes of human bladder cells and cells in bladder cancer
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[6] object · 15 fields
id
data:geo:GSE31189
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE31189
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE31189
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 92 items
[0]
GSM773124
[1]
GSM773125
[2]
GSM773126
[3]
GSM773127
[4]
GSM773128
[5]
GSM773129
[6]
GSM773130
[7]
GSM773131
[8]
GSM773132
[9]
GSM773133
[10]
GSM773134
[11]
GSM773135
[12]
GSM773136
[13]
GSM773137
[14]
GSM773138
[15]
GSM773139
[16]
GSM773140
[17]
GSM773141
[18]
GSM773142
[19]
GSM773143
[20]
GSM773144
[21]
GSM773145
[22]
GSM773146
[23]
GSM773147
[24]
GSM773148
[25]
GSM773149
[26]
GSM773150
[27]
GSM773151
[28]
GSM773152
[29]
GSM773153
[30]
GSM773154
[31]
GSM773155
[32]
GSM773156
[33]
GSM773157
[34]
GSM773158
[35]
GSM773159
[36]
GSM773160
[37]
GSM773161
[38]
GSM773162
[39]
GSM773163
[40]
GSM773164
[41]
GSM773165
[42]
GSM773166
[43]
GSM773167
[44]
GSM773168
[45]
GSM773169
[46]
GSM773170
[47]
GSM773171
[48]
GSM773172
[49]
GSM773173
[50]
GSM773174
[51]
GSM773175
[52]
GSM773176
[53]
GSM773177
[54]
GSM773178
[55]
GSM773179
[56]
GSM773180
[57]
GSM773181
[58]
GSM773182
[59]
GSM773183
[60]
GSM773184
[61]
GSM773185
[62]
GSM773186
[63]
GSM773187
[64]
GSM773188
[65]
GSM773189
[66]
GSM773190
[67]
GSM773191
[68]
GSM773192
[69]
GSM773193
[70]
GSM773194
[71]
GSM773195
[72]
GSM773196
[73]
GSM773197
[74]
GSM773198
[75]
GSM773199
[76]
GSM773200
[77]
GSM773201
[78]
GSM773202
[79]
GSM773203
[80]
GSM773204
[81]
GSM773205
[82]
GSM773206
[83]
GSM773207
[84]
GSM773208
[85]
GSM773209
[86]
GSM773210
[87]
GSM773211
[88]
GSM773212
[89]
GSM773213
[90]
GSM773214
[91]
GSM773215
sample_count
92
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Molecular Biomarker Signature for Bladder Cancer Detection
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[7] object · 15 fields
id
data:geo:GSE31684
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE31684
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE31684
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 93 items
[0]
GSM786491
[1]
GSM786492
[2]
GSM786493
[3]
GSM786494
[4]
GSM786495
[5]
GSM786496
[6]
GSM786497
[7]
GSM786498
[8]
GSM786499
[9]
GSM786500
[10]
GSM786501
[11]
GSM786502
[12]
GSM786503
[13]
GSM786504
[14]
GSM786505
[15]
GSM786506
[16]
GSM786507
[17]
GSM786508
[18]
GSM786509
[19]
GSM786510
[20]
GSM786511
[21]
GSM786512
[22]
GSM786513
[23]
GSM786514
[24]
GSM786515
[25]
GSM786516
[26]
GSM786517
[27]
GSM786518
[28]
GSM786519
[29]
GSM786520
[30]
GSM786521
[31]
GSM786522
[32]
GSM786523
[33]
GSM786524
[34]
GSM786525
[35]
GSM786526
[36]
GSM786527
[37]
GSM786528
[38]
GSM786529
[39]
GSM786530
[40]
GSM786531
[41]
GSM786532
[42]
GSM786533
[43]
GSM786534
[44]
GSM786535
[45]
GSM786536
[46]
GSM786537
[47]
GSM786538
[48]
GSM786539
[49]
GSM786540
[50]
GSM786541
[51]
GSM786542
[52]
GSM786543
[53]
GSM786544
[54]
GSM786545
[55]
GSM786546
[56]
GSM786547
[57]
GSM786548
[58]
GSM786549
[59]
GSM786550
[60]
GSM786551
[61]
GSM786552
[62]
GSM786553
[63]
GSM786554
[64]
GSM786555
[65]
GSM786556
[66]
GSM786557
[67]
GSM786558
[68]
GSM786559
[69]
GSM786560
[70]
GSM786561
[71]
GSM786562
[72]
GSM786563
[73]
GSM786564
[74]
GSM786565
[75]
GSM786566
[76]
GSM786567
[77]
GSM786568
[78]
GSM786569
[79]
GSM786570
[80]
GSM786571
[81]
GSM786572
[82]
GSM786573
[83]
GSM786574
[84]
GSM786575
[85]
GSM786576
[86]
GSM786577
[87]
GSM786578
[88]
GSM786579
[89]
GSM786580
[90]
GSM786581
[91]
GSM786582
[92]
GSM786583
sample_count
93
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer  
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[8] object · 15 fields
id
data:geo:GSE37815
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37815
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE37815
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 24 items
[0]
GSM340538
[1]
GSM340539
[2]
GSM340541
[3]
GSM340542
[4]
GSM340544
[5]
GSM340545
[6]
GSM340642
[7]
GSM340645
[8]
GSM340651
[9]
GSM340652
[10]
GSM340662
[11]
GSM340663
[12]
GSM340666
[13]
GSM340667
[14]
GSM340682
[15]
GSM340686
[16]
GSM340698
[17]
GSM340710
[18]
GSM340711
[19]
GSM340713
[20]
GSM340717
[21]
GSM340737
[22]
GSM340740
[23]
GSM340749
sample_count
24
group_sizes
null
group_sizes_basis
null
platform
6102
taxon
Homo sapiens
title
DNA methylation and expression profiling study for bladder cancer [gene expression]
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[9] object · 15 fields
id
data:geo:GSE37817
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE37817
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE37817
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 48 items
[0]
GSM340538
[1]
GSM340539
[2]
GSM340541
[3]
GSM340542
[4]
GSM340544
[5]
GSM340545
[6]
GSM340642
[7]
GSM340645
[8]
GSM340651
[9]
GSM340652
[10]
GSM340662
[11]
GSM340663
[12]
GSM340666
[13]
GSM340667
[14]
GSM340682
[15]
GSM340686
[16]
GSM340698
[17]
GSM340710
[18]
GSM340711
[19]
GSM340713
[20]
GSM340717
[21]
GSM340737
[22]
GSM340740
[23]
GSM340749
[24]
GSM928410
[25]
GSM928411
[26]
GSM928412
[27]
GSM928413
[28]
GSM928414
[29]
GSM928415
[30]
GSM928416
[31]
GSM928417
[32]
GSM928418
[33]
GSM928419
[34]
GSM928420
[35]
GSM928421
[36]
GSM928422
[37]
GSM928423
[38]
GSM928424
[39]
GSM928425
[40]
GSM928426
[41]
GSM928427
[42]
GSM928428
[43]
GSM928429
[44]
GSM928430
[45]
GSM928431
[46]
GSM928432
[47]
GSM928433
sample_count
48
group_sizes
null
group_sizes_basis
null
platform
8490;6102
taxon
Homo sapiens
title
DNA methylation and expression profiling study for bladder cancer
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[10] object · 15 fields
id
data:geo:GSE40355
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40355
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE40355
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 48 items
[0]
GSM881439
[1]
GSM881440
[2]
GSM881441
[3]
GSM881442
[4]
GSM881443
[5]
GSM881444
[6]
GSM881445
[7]
GSM881446
[8]
GSM881447
[9]
GSM881448
[10]
GSM881449
[11]
GSM881450
[12]
GSM881451
[13]
GSM881452
[14]
GSM881453
[15]
GSM881454
[16]
GSM881455
[17]
GSM881456
[18]
GSM881457
[19]
GSM881458
[20]
GSM881459
[21]
GSM881460
[22]
GSM881461
[23]
GSM881462
[24]
GSM991923
[25]
GSM991924
[26]
GSM991925
[27]
GSM991926
[28]
GSM991927
[29]
GSM991928
[30]
GSM991929
[31]
GSM991930
[32]
GSM991931
[33]
GSM991932
[34]
GSM991933
[35]
GSM991934
[36]
GSM991935
[37]
GSM991936
[38]
GSM991937
[39]
GSM991938
[40]
GSM991939
[41]
GSM991940
[42]
GSM991941
[43]
GSM991942
[44]
GSM991943
[45]
GSM991944
[46]
GSM991945
[47]
GSM991946
sample_count
48
group_sizes
null
group_sizes_basis
null
platform
8227;13497
taxon
Homo sapiens
title
Bladder cancer: analysis of miRNA-mRNA interactions
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[11] object · 15 fields
id
data:geo:GSE52519
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52519
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE52519
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 12 items
[0]
GSM1268190
[1]
GSM1268191
[2]
GSM1268192
[3]
GSM1268193
[4]
GSM1268194
[5]
GSM1268195
[6]
GSM1268196
[7]
GSM1268197
[8]
GSM1268198
[9]
GSM1268199
[10]
GSM1268200
[11]
GSM1268201
sample_count
12
group_sizes
null
group_sizes_basis
null
platform
6884
taxon
Homo sapiens
title
Genome-wide analysis of gene expression in cancerous and normal human bladder tissues
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[12] object · 15 fields
id
data:geo:GSE65635
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65635
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE65635
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 12 items
[0]
GSM1602279
[1]
GSM1602280
[2]
GSM1602281
[3]
GSM1602282
[4]
GSM1602283
[5]
GSM1602284
[6]
GSM1602285
[7]
GSM1602286
[8]
GSM1602287
[9]
GSM1602288
[10]
GSM1602289
[11]
GSM1602290
sample_count
12
group_sizes
null
group_sizes_basis
null
platform
14951
taxon
Homo sapiens
title
Transcriptome analysis of normal and cancerous bladder tissues.
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[13] object · 15 fields
id
data:geo:GSE7476
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7476
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE7476
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 12 items
[0]
GSM180991
[1]
GSM180992
[2]
GSM180993
[3]
GSM180994
[4]
GSM180995
[5]
GSM180996
[6]
GSM180997
[7]
GSM180998
[8]
GSM180999
[9]
GSM181000
[10]
GSM181001
[11]
GSM181002
sample_count
12
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Analysis of clinical bladder cancer classification according to microarray expression profiles
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[14] object · 15 fields
id
data:geo:GSE76211
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE76211
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE76211
version
null
note
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
access_statement_kind
data_availability_statement
sample_accessions array · 6 items
[0]
GSM1976573
[1]
GSM1976574
[2]
GSM1976575
[3]
GSM1976577
[4]
GSM1976579
[5]
GSM1976580
sample_count
6
group_sizes
null
group_sizes_basis
null
platform
17586
taxon
Homo sapiens
title
mRNA Expression data from bladder cancer and normal bladder tissue
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[15] object · 16 fields
id
asset:table:pmid:31190871:1
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:e960820ce9a6f3142fbdb0dec88b5b81ffd43104040007f915439492b3b6088b
bytes
4950
access
open
state
verified
reader
read_table
reader_status
available
identifier
section[9]/table-wrap[1]#T0001
version
null
note
GO and KEGG analysis of differentially expressed autophagy-related genes
structure object · 5 fields
pmcid
PMC6526186
section_index
9
section_title
Functional annotation of the differentially expressed ARGs
row_count
41
column_count
5
table object · 8 fields
label
Table 1
caption
GO and KEGG analysis of differentially expressed autophagy-related genes
rows array · 41 items
[0] array · 5 items
[0]
Category
[1]
ID
[2]
Term
[3]
P-value
[4]
Genes
[1] array · 5 items
[0]
Biological Process
[1]
GO:0042493
[2]
Response to drug
[3]
4.44E−06
[4]
FOS, CDKN1A, JUN, BCL2, ITGA3, MYC, TP73
[2] array · 5 items
[0]
Biological Process
[1]
GO:0010332
[2]
Response to gamma radiation
[3]
1.27E−05
[4]
CCL2, BCL2, MYC, TP73
[3] array · 5 items
[0]
Biological Process
[1]
GO:0006915
[2]
Apoptotic process
[3]
1.36E−05
[4]
DLC1, EVA1A, CDKN2A, CXCR4, BCL2, BIRC5, PPP1R15A, TP73
[4] array · 5 items
[0]
Biological Process
[1]
GO:0007346
[2]
Regulation of mitotic cell cycle
[3]
2.78E−05
[4]
CDKN1A, BIRC5, MYC, TP73
[5] array · 5 items
[0]
Biological Process
[1]
GO:0043524
[2]
Negative regulation of neuron apoptotic process
[3]
4.06E−05
[4]
CCL2, JUN, BCL2, BIRC5, TP73
[6] array · 5 items
[0]
Biological Process
[1]
GO:0007050
[2]
Cell cycle arrest
[3]
5.25E−05
[4]
CDKN1A, CDKN2A, PPP1R15A, MYC, TP73
[7] array · 5 items
[0]
Biological Process
[1]
GO:0006974
[2]
Cellular response to DNA damage stimulus
[3]
2.36E−04
[4]
CDKN1A, BCL2, PPP1R15A, MYC, TP73
[8] array · 5 items
[0]
Biological Process
[1]
GO:0001836
[2]
Release of cytochrome c from mitochondria
[3]
5.28E−04
[4]
BID, JUN, BCL2
[9] array · 5 items
[0]
Biological Process
[1]
GO:0045893
[2]
Positive regulation of transcription, DNA-templated
[3]
8.50E−04
[4]
FOS, CDKN2A, JUN, MYC, TP53INP2, TP73
[10] array · 5 items
[0]
Biological Process
[1]
GO:1900740
[2]
Positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway
[3]
9.02E−04
[4]
BID, BCL2, TP73
[11] array · 5 items
[0]
Cellular Component
[1]
GO:0005829
[2]
Cytosol
[3]
3.94E−06
[4]
BID, DLC1, NAMPT, GABARAPL1, BIRC5, TP73, FOS, CDKN1A, EIF4EBP1, CDKN2A, JUN, BCL2, BAG3, MYC, PPP1R15A, TP53INP2
[12] array · 5 items
[0]
Cellular Component
[1]
GO:0043234
[2]
Protein complex
[3]
0.002235
[4]
EIF4EBP1, CDKN1A, CDKN2A, MYC, ITPR1
[13] array · 5 items
[0]
Cellular Component
[1]
GO:0005739
[2]
Mitochondrion
[3]
0.007959
[4]
BID, GABARAPL1, CDKN2A, BCL2, PPP1R15A, MYC, TP73
[14] array · 5 items
[0]
Cellular Component
[1]
GO:0005654
[2]
Nucleoplasm
[3]
0.008942
[4]
NAMPT, FOS, EIF4EBP1, CDKN1A, CDKN2A, JUN, HSPB8, BIRC5, MYC, TP73
[15] array · 5 items
[0]
Cellular Component
[1]
GO:0005741
[2]
Mitochondrial outer membrane
[3]
0.017612
[4]
BID, BCL2, PPP1R15A
[16] array · 5 items
[0]
Cellular Component
[1]
GO:0030054
[2]
Cell junction
[3]
0.024203
[4]
NAMPT, CXCR4, ITGB4, TP73
[17] array · 5 items
[0]
Cellular Component
[1]
GO:0005783
[2]
Endoplasmic reticulum
[3]
0.025005
[4]
FOS, GABARAPL1, BCL2, PPP1R15A, ITPR1
[18] array · 5 items
[0]
Cellular Component
[1]
GO:0005667
[2]
Transcription factor complex
[3]
0.028532
[4]
FOS, JUN, TP73
[19] array · 5 items
[0]
Cellular Component
[1]
GO:0005794
[2]
Golgi apparatus
[3]
0.028578
[4]
GABARAPL1, HSPB8, RGS19, PPP1R15A
[20] array · 5 items
[0]
Cellular Component
[1]
GO:0008305
[2]
Integrin complex
[3]
0.036412
[4]
ITGB4, ITGA3
[21] array · 5 items
[0]
Cellular Component
[1]
GO:0005515
[2]
Protein binding
[3]
3.97E−05
[4]
BID, DLC1, NAMPT, GABARAPL1, ITGB4, RGS19, BIRC5, ITGA3, CX3CL1, TP73, ITPR1, FOS, CDKN1A, EIF4EBP1, CDKN2A, CXCR4, JUN, HSPB8, BCL2, BAG3, MYC, PPP1R15A, TP53INP2
[22] array · 5 items
[0]
Molecular Function
[1]
GO:0008134
[2]
Transcription factor binding
[3]
4.25E−05
[4]
FOS, CDKN2A, JUN, BCL2, MYC, TP73
[23] array · 5 items
[0]
Molecular Function
[1]
GO:0031625
[2]
Ubiquitin protein ligase binding
[3]
6.65E−04
[4]
BID, GABARAPL1, CDKN1A, CXCR4, BCL2
[24] array · 5 items
[0]
Molecular Function
[1]
GO:0046982
[2]
Protein heterodimerization activity
[3]
0.003898
[4]
FOS, JUN, BCL2, BIRC5, ITGA3
[25] array · 5 items
[0]
Molecular Function
[1]
GO:0001077
[2]
Transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
[3]
0.004395
[4]
FOS, JUN, MYC, TP73
[26] array · 5 items
[0]
Molecular Function
[1]
GO:0043565
[2]
Sequence-specific DNA binding
[3]
0.005716
[4]
FOS, JUN, BCL2, MYC, TP73
[27] array · 5 items
[0]
Molecular Function
[1]
GO:0000978
[2]
RNA polymerase II core promoter proximal region sequence-specific DNA binding
[3]
0.013453
[4]
FOS, JUN, MYC, TP73
[28] array · 5 items
[0]
Molecular Function
[1]
GO:0004861
[2]
Cyclin-dependent protein serine/threonine kinase inhibitor activity
[3]
0.015533
[4]
CDKN1A, CDKN2A
[29] array · 5 items
[0]
Molecular Function
[1]
GO:0019901
[2]
Protein kinase binding
[3]
0.015684
[4]
CDKN2A, RGS19, PPP1R15A, TP73
[30] array · 5 items
[0]
Molecular Function
[1]
GO:0042802
[2]
Identical protein binding
[3]
0.020127
[4]
JUN, HSPB8, BCL2, BIRC5, TP73
[31] array · 5 items
[0]
KEGG PATHWAY
[1]
hsa05200
[2]
Pathways in cancer
[3]
3.16E−07
[4]
BID, FOS, CDKN1A, CDKN2A, CXCR4, JUN, BCL2, BIRC5, ITGA3, MYC
[32] array · 5 items
[0]
KEGG PATHWAY
[1]
hsa05210
[2]
Colorectal cancer
[3]
2.06E−05
[4]
FOS, JUN, BCL2, BIRC5, MYC
[33] array · 5 items
[0]
KEGG PATHWAY
[1]
hsa05161
[2]
Hepatitis B
[3]
3.48E−05
[4]
FOS, CDKN1A, JUN, BCL2, BIRC5, MYC
[34] array · 5 items
[0]
KEGG PATHWAY
[1]
hsa04012
[2]
ErbB signaling pathway
[3]
7.87E−05
[4]
EIF4EBP1, CDKN1A, JUN, NRG2, MYC
[35] array · 5 items
[0]
KEGG PATHWAY
[1]
hsa04115
[2]
p53 signaling pathway
[3]
7.56E−04
[4]
BID, CDKN1A, CDKN2A, TP73
[36] array · 5 items
[0]
KEGG PATHWAY
[1]
hsa04151
[2]
PI3K-Akt signaling pathway
[3]
0.001961
[4]
EIF4EBP1, CDKN1A, BCL2, ITGB4, ITGA3, MYC
[37] array · 5 items
[0]
KEGG PATHWAY
[1]
hsa04668
[2]
TNF signaling pathway
[3]
0.002843
[4]
FOS, CCL2, JUN, CX3CL1
[38] array · 5 items
[0]
KEGG PATHWAY
[1]
hsa05166
[2]
HTLV-I infection
[3]
0.004594
[4]
FOS, CDKN1A, CDKN2A, JUN, MYC
[39] array · 5 items
[0]
KEGG PATHWAY
[1]
hsa05219
[2]
Bladder cancer
[3]
0.00551
[4]
CDKN1A, CDKN2A, MYC
[40] array · 5 items
[0]
KEGG PATHWAY
[1]
hsa04921
[2]
Oxytocin signaling pathway
[3]
0.008685
[4]
FOS, CDKN1A, JUN, ITPR1
locator
section[9]/table-wrap[1]#T0001
[16] object · 16 fields
id
asset:table:pmid:31190871:2
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:85290b1004f06323d417f99574c28833ca5b20ce382eb206080b666856c474f4
bytes
4540
access
open
state
verified
reader
read_table
reader_status
available
identifier
section[10]/table-wrap[1]#T0002
version
null
note
Expression and Cox regression analysis data of the prognosis-related ARGs in bladder cancer by TCGA
structure object · 5 fields
pmcid
PMC6526186
section_index
10
section_title
Identification of prognostic ARGs
row_count
56
column_count
10
table object · 8 fields
label
Table 2
caption
Expression and Cox regression analysis data of the prognosis-related ARGs in bladder cancer by TCGA
rows array · 56 items
[0] array · 4 items
[0]
Gene
[1]
Expression
[2]
Univariate Cox
[3]
Multivariate Cox
[1] array · 8 items
[0]
mean±SD
[1]
P-value
[2]
HR
[3]
z
[4]
P-value
[5]
HR
[6]
z
[7]
P-value
[2] array · 10 items
[0]
JUN
[1]
Tumor
[2]
13.002773±1.164031
[3]
<0.0001
[4]
1.198762
[5]
2.651598
[6]
0.008011
[7]
1.1786
[8]
2.38
[9]
0.017
[3] array · 10 items
[0]
[1]
Non-tumor
[2]
15.027896±1.185059
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[4] array · 10 items
[0]
MYC
[1]
Tumor
[2]
11.541411±1.554496
[3]
<0.0001
[4]
1.14059
[5]
2.606545
[6]
0.009146
[7]
1.1682
[8]
2.97
[9]
0.003
[5] array · 10 items
[0]
[1]
Non-tumor
[2]
13.287664±1.265550
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[6] array · 10 items
[0]
ITGA3
[1]
Tumor
[2]
13.822128±1.515658
[3]
<0.0001
[4]
0.907077
[5]
−2.0139
[6]
0.04402
[7]
−0.1505
[8]
−2.97
[9]
0.003
[7] array · 10 items
[0]
[1]
Non-tumor
[2]
12.975430±1.091134
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[8] array · 10 items
[0]
NAMPT
[1]
Tumor
[2]
12.330813±1.009040
[3]
<0.0001
[4]
1.172207
[5]
2.001379
[6]
0.045352
[7]
[8]
[9]
0.340
[9] array · 10 items
[0]
[1]
Non-tumor
[2]
13.308780±1.459465
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[10] array · 10 items
[0]
FOS
[1]
Tumor
[2]
13.343147±1.608937
[3]
<0.0001
[4]
1.063323
[5]
1.267733
[6]
0.204893
[7]
[8]
[9]
[11] array · 10 items
[0]
[1]
Non-tumor
[2]
16.672991±1.404332
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[12] array · 10 items
[0]
HSPB8
[1]
Tumor
[2]
10.106659±2.154647
[3]
<0.0001
[4]
1.068919
[5]
1.911278
[6]
0.055969
[7]
[8]
[9]
[13] array · 10 items
[0]
[1]
Non-tumor
[2]
13.749171±1.702493
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[14] array · 10 items
[0]
CDKN1A
[1]
Tumor
[2]
13.124746±1.128535
[3]
<0.0001
[4]
1.01594
[5]
0.22579
[6]
0.821364
[7]
[8]
[9]
[15] array · 10 items
[0]
[1]
Non-tumor
[2]
14.389922±1.347070
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[16] array · 10 items
[0]
ITPR1
[1]
Tumor
[2]
9.5318665±1.169013
[3]
<0.0001
[4]
0.997873
[5]
−0.03415
[6]
0.972754
[7]
[8]
[9]
[17] array · 10 items
[0]
[1]
Non-tumor
[2]
11.929274±1.585768
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[18] array · 10 items
[0]
TP53INP2
[1]
Tumor
[2]
10.462387±0.976958
[3]
<0.0001
[4]
1.119264
[5]
1.518161
[6]
0.128974
[7]
[8]
[9]
[19] array · 10 items
[0]
[1]
Non-tumor
[2]
12.653637±1.109542
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[20] array · 10 items
[0]
BIRC5
[1]
Tumor
[2]
11.387251±1.094559
[3]
<0.0001
[4]
1.06901
[5]
0.897696
[6]
0.369347
[7]
[8]
[9]
[21] array · 10 items
[0]
[1]
Non-tumor
[2]
7.9468232±2.565110
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[22] array · 10 items
[0]
PPP1R15A
[1]
Tumor
[2]
12.441886±0.891543
[3]
<0.0001
[4]
0.940067
[5]
−0.71379
[6]
0.475356
[7]
[8]
[9]
[23] array · 10 items
[0]
[1]
Non-tumor
[2]
13.738993±1.001618
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[24] array · 10 items
[0]
DLC1
[1]
Tumor
[2]
9.5131164±1.257221
[3]
<0.0001
[4]
1.021996
[5]
0.347978
[6]
0.727857
[7]
[8]
[9]
[25] array · 10 items
[0]
[1]
Non-tumor
[2]
11.242183±0.995269
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[26] array · 10 items
[0]
BAG3
[1]
Tumor
[2]
11.719572±0.731981
[3]
<0.0001
[4]
1.192655
[5]
1.702932
[6]
0.088581
[7]
[8]
[9]
[27] array · 10 items
[0]
[1]
Non-tumor
[2]
12.704785±1.108736
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[28] array · 10 items
[0]
GABARAPL1
[1]
Tumor
[2]
11.058632±0.792235
[3]
<0.0001
[4]
1.051224
[5]
0.525272
[6]
0.599394
[7]
[8]
[9]
[29] array · 10 items
[0]
[1]
Non-tumor
[2]
12.255963±0.614109
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[30] array · 10 items
[0]
BCL2
[1]
Tumor
[2]
8.3027604±1.178505
[3]
<0.0001
[4]
1.051513
[5]
0.768008
[6]
0.442482
[7]
[8]
[9]
[31] array · 10 items
[0]
[1]
Non-tumor
[2]
10.256868±0.425816
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[32] array · 10 items
[0]
CDKN2A
[1]
Tumor
[2]
8.9951212±3.453185
[3]
<0.0001
[4]
0.990449
[5]
−0.44257
[6]
0.658076
[7]
[8]
[9]
[33] array · 10 items
[0]
[1]
Non-tumor
[2]
6.6235955±1.685343
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[34] array · 10 items
[0]
CCL2
[1]
Tumor
[2]
9.0438964±1.821760
[3]
<0.0001
[4]
1.053817
[5]
1.273601
[6]
0.202805
[7]
[8]
[9]
[35] array · 10 items
[0]
[1]
Non-tumor
[2]
11.704824±2.040782
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[36] array · 10 items
[0]
PRKN
[1]
Tumor
[2]
5.2978598±1.521700
[3]
<0.0001
[4]
1.009973
[5]
0.201647
[6]
0.840193
[7]
[8]
[9]
[37] array · 10 items
[0]
[1]
Non-tumor
[2]
8.1483213±1.213423
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[38] array · 10 items
[0]
BID
[1]
Tumor
[2]
11.340986±0.737984
[3]
<0.0001
[4]
0.839371
[5]
−1.70367
[6]
0.088442
[7]
[8]
[9]
[39] array · 10 items
[0]
[1]
Non-tumor
[2]
10.105586±0.651137
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[40] array · 10 items
[0]
EVA1A
[1]
Tumor
[2]
6.5437907±2.147278
[3]
<0.0001
[4]
1.057202
[5]
1.528728
[6]
0.126332
[7]
[8]
[9]
[41] array · 10 items
[0]
[1]
Non-tumor
[2]
3.8921911±1.267249
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[42] array · 10 items
[0]
CXCR4
[1]
Tumor
[2]
10.259886±1.380760
[3]
<0.0001
[4]
1.013263
[5]
0.261675
[6]
0.793572
[7]
[8]
[9]
[43] array · 10 items
[0]
[1]
Non-tumor
[2]
11.447608±1.958345
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[44] array · 10 items
[0]
NRG2
[1]
Tumor
[2]
4.7761532±2.145474
[3]
<0.0001
[4]
0.985697
[5]
−0.43265
[6]
0.665266
[7]
[8]
[9]
[45] array · 10 items
[0]
[1]
Non-tumor
[2]
7.9643803±1.000720
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[46] array · 10 items
[0]
TP73
[1]
Tumor
[2]
7.9164301±2.009466
[3]
<0.0001
[4]
0.984879
[5]
−0.3943
[6]
0.69336
[7]
[8]
[9]
[47] array · 10 items
[0]
[1]
Non-tumor
[2]
5.9146373±2.363484
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[48] array · 10 items
[0]
RGS19
[1]
Tumor
[2]
9.9259644±0.729683
[3]
<0.0001
[4]
1.143028
[5]
1.313883
[6]
0.188886
[7]
[8]
[9]
[49] array · 10 items
[0]
[1]
Non-tumor
[2]
8.6949825±0.978522
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[50] array · 10 items
[0]
EIF4EBP1
[1]
Tumor
[2]
11.427944±1.081142
[3]
<0.0001
[4]
1.046433
[5]
0.666103
[6]
0.505345
[7]
[8]
[9]
[51] array · 10 items
[0]
[1]
Non-tumor
[2]
9.8783883±0.927159
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[52] array · 10 items
[0]
CX3CL1
[1]
Tumor
[2]
9.7520038±1.782426
[3]
<0.0001
[4]
1.034169
[5]
0.77976
[6]
0.435532
[7]
[8]
[9]
[53] array · 10 items
[0]
[1]
Non-tumor
[2]
12.084799±0.955857
[3]
[4]
[5]
[6]
[7]
[8]
[9]
[54] array · 10 items
[0]
ITGB4
[1]
Tumor
[2]
14.253622±1.551662
[3]
<0.0001
[4]
0.936675
[5]
−1.33788
[6]
0.180934
[7]
[8]
[9]
[55] array · 10 items
[0]
[1]
Non-tumor
[2]
13.188612±1.541228
[3]
[4]
[5]
[6]
[7]
[8]
[9]
locator
section[10]/table-wrap[1]#T0002
[17] object · 16 fields
id
asset:table:pmid:31190871:3
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:8455598ce6b03c89b05ae2856fd379ace37272ce14d02e4cbd6e5e3718499832
bytes
2514
access
open
state
verified
reader
read_table
reader_status
available
identifier
section[10]/table-wrap[2]#T0003
version
null
note
Relationships between three key prognostic genes expression and clinical parameters in bladder cancer by TCGA
structure object · 5 fields
pmcid
PMC6526186
section_index
10
section_title
Identification of prognostic ARGs
row_count
22
column_count
12
table object · 8 fields
label
Table 3
caption
Relationships between three key prognostic genes expression and clinical parameters in bladder cancer by TCGA
rows array · 22 items
[0] array · 5 items
[0]
Parameters
[1]
N
[2]
JUN expression value
[3]
MYC expression value
[4]
ITGA3 expression value
[1] array · 9 items
[0]
M±SD
[1]
t value
[2]
P-value
[3]
M±SD
[4]
t value
[5]
P-value
[6]
M±SD
[7]
t value
[8]
P-value
[2] array · 12 items
[0]
Tissues
[1]
Tumor
[2]
414
[3]
13.0028±1.1640
[4]
−7.410
[5]
<0.001
[6]
11.5414±1.5545
[7]
−4.822
[8]
<0.001
[9]
13.8221±1.5157
[10]
2.405
[11]
0.017
[3] array · 5 items
[0]
Non-tumor
[1]
19
[2]
15.0279±1.1851
[3]
13.2877±1.2655
[4]
12.9754±1.0911
[4] array · 12 items
[0]
Age
[1]
≥60
[2]
321
[3]
13.0359±1.1327
[4]
1.076
[5]
0.150
[6]
11.6119±1.5304
[7]
1.571
[8]
0.117
[9]
13.7787±1.5272
[10]
−1.665
[11]
0.097
[5] array · 5 items
[0]
<60
[1]
87
[2]
12.8852±1.2530
[3]
11.3177±1.6171
[4]
14.0830±1.4561
[6] array · 12 items
[0]
Gender
[1]
Male
[2]
301
[3]
12.9868±1.1674
[4]
−0.495
[5]
0.621
[6]
11.4625±1.5666
[7]
−1.898
[8]
0.058
[9]
13.7850±1.5661
[10]
−1.311
[11]
0.191
[7] array · 5 items
[0]
Female
[1]
107
[2]
13.0515±1.1410
[3]
11.7930±1.4901
[4]
14.0084±1.3574
[8] array · 12 items
[0]
Subtype
[1]
Non-papillary
[2]
271
[3]
13.1979±1.0811
[4]
4.903
[5]
<0.001
[6]
11.7343±1.5708
[7]
3.405
[8]
0.001
[9]
13.7762±1.5897
[10]
−1.492
[11]
0.136
[9] array · 5 items
[0]
Papillary
[1]
132
[2]
12.6091±1.2284
[3]
11.1787±1.4654
[4]
14.0137±1.2921
[10] array · 12 items
[0]
Tumor status
[1]
With tumor
[2]
151
[3]
13.0248±1.0119
[4]
0.459
[5]
0.647
[6]
11.6697±1.5948
[7]
1.351
[8]
0.177
[9]
13.7276±1.5787
[10]
1.763
[11]
0.079
[11] array · 5 items
[0]
Tumor free
[1]
201
[2]
12.9720±1.2459
[3]
11.4571±1.4702
[4]
13.9996±1.4314
[12] array · 12 items
[0]
Histological grade
[1]
High grade
[2]
384
[3]
13.0359±1.1529
[4]
2.143
[5]
0.033
[6]
11.5759±1.5844
[7]
3.002
[8]
0.005
[9]
13.7990±1.5338
[10]
−6.996
[11]
<0.001
[13] array · 5 items
[0]
Low grade
[1]
21
[2]
12.4819±1.1653
[3]
11.0637±0.6886
[4]
14.8231±0.5669
[14] array · 12 items
[0]
Pathologic stage
[1]
Ⅲ~Ⅳ
[2]
274
[3]
13.1826±1.0448
[4]
4.206
[5]
<0.001
[6]
11.6576±1.4617
[7]
1.944
[8]
0.053
[9]
13.7353±1.5386
[10]
−2.136
[11]
0.033
[15] array · 5 items
[0]
I~II
[1]
132
[2]
12.6367±1.3030
[3]
11.3387±1.7148
[4]
14.0770±1.4496
[16] array · 12 items
[0]
T stage
[1]
T3–T4
[2]
252
[3]
13.1958±1.0249
[4]
3.064
[5]
0.002
[6]
11.6811±1.4423
[7]
1.643
[8]
0.101
[9]
13.7290±1.5227
[10]
−2.684
[11]
0.008
[17] array · 5 items
[0]
T1–T2
[1]
123
[2]
12.8322±1.1819
[3]
11.4088±1.6306
[4]
14.1726±1.4599
[18] array · 12 items
[0]
N stage
[1]
N1–3
[2]
129
[3]
13.1086±0.9329
[4]
1.265
[5]
0.207
[6]
11.4309±1.4607
[7]
−1.517
[8]
0.130
[9]
13.6208±1.4944
[10]
−2.427
[11]
0.016
[19] array · 5 items
[0]
N0
[1]
237
[2]
12.9643±1.2176
[3]
11.6798±1.5195
[4]
14.0205±1.5112
[20] array · 12 items
[0]
M stage
[1]
M1
[2]
11
[3]
12.8009±1.0016
[4]
−0.191
[5]
0.849
[6]
11.9098±1.8601
[7]
1.245
[8]
0.215
[9]
13.5755±1.3148
[10]
−0.792
[11]
0.429
[21] array · 5 items
[0]
M0
[1]
196
[2]
12.8728±1.2223
[3]
11.3199±1.5104
[4]
13.9395±1.4919
locator
section[10]/table-wrap[2]#T0003
[18] object · 16 fields
id
asset:table:pmid:31190871:4
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:c2ff2bc776f8eab5d91fa372e4b3e687cf08c78e055b8ea7f2cf95531fabe6bc
bytes
842
access
open
state
verified
reader
read_table
reader_status
available
identifier
section[11]/table-wrap[1]#T0004
version
null
note
Univariate and multivariate analyses of OS in bladder cancer patients of TCGA
structure object · 5 fields
pmcid
PMC6526186
section_index
11
section_title
Construction and definition of the PI
row_count
8
column_count
5
table object · 8 fields
label
Table 4
caption
Univariate and multivariate analyses of OS in bladder cancer patients of TCGA
rows array · 8 items
[0] array · 3 items
[0]
Variables
[1]
Univariate analysis
[2]
Multivariate analysis
[1] array · 4 items
[0]
Hazard ratio (95%CI)
[1]
P-value
[2]
Hazard ratio (95% CI)
[3]
P-value
[2] array · 5 items
[0]
Age
[1]
1.033 (1.017–1.049)
[2]
<0.001
[3]
1.029 (1.014–1.045)
[4]
<0.001
[3] array · 5 items
[0]
Gender
[1]
0.872 (0.631–1.203)
[2]
0.404
[3]
0.818 (0.588–1.139)
[4]
0.235
[4] array · 5 items
[0]
Subtype
[1]
1.458 (1.030–2.065)
[2]
0.033
[3]
1.084 (0.756–1.553)
[4]
0.661
[5] array · 5 items
[0]
Pathologic stage
[1]
1.707 (1.412–2.065)
[2]
<0.001
[3]
1.617 (1.321–1.978)
[4]
<0.001
[6] array · 5 items
[0]
Histologic grade
[1]
2.968 (0.734–11.995)
[2]
0.127
[3]
0.931 (0.221–3.918)
[4]
0.922
[7] array · 5 items
[0]
Prognostic index
[1]
2.717 (1.764–4.184)
[2]
<0.001
[3]
2.355 (1.483–3.739)
[4]
<0.001
locator
section[11]/table-wrap[1]#T0004
gaps array · 28 items
[0]
asset:data:geo:GSE100926 not downloaded
[1]
asset:data:geo:GSE100926 licence not read
[2]
asset:data:geo:GSE13507 not downloaded
[3]
asset:data:geo:GSE13507 licence not read
[4]
asset:data:geo:GSE2109 not downloaded
[5]
asset:data:geo:GSE2109 licence not read
[6]
asset:data:geo:GSE24152 not downloaded
[7]
asset:data:geo:GSE24152 licence not read
[8]
asset:data:geo:GSE30522 not downloaded
[9]
asset:data:geo:GSE30522 licence not read
[10]
asset:data:geo:GSE31189 not downloaded
[11]
asset:data:geo:GSE31189 licence not read
[12]
asset:data:geo:GSE31684 not downloaded
[13]
asset:data:geo:GSE31684 licence not read
[14]
asset:data:geo:GSE37815 not downloaded
[15]
asset:data:geo:GSE37815 licence not read
[16]
asset:data:geo:GSE37817 not downloaded
[17]
asset:data:geo:GSE37817 licence not read
[18]
asset:data:geo:GSE40355 not downloaded
[19]
asset:data:geo:GSE40355 licence not read
[20]
asset:data:geo:GSE52519 not downloaded
[21]
asset:data:geo:GSE52519 licence not read
[22]
asset:data:geo:GSE65635 not downloaded
[23]
asset:data:geo:GSE65635 licence not read
[24]
asset:data:geo:GSE7476 not downloaded
[25]
asset:data:geo:GSE7476 licence not read
[26]
asset:data:geo:GSE76211 not downloaded
[27]
asset:data:geo:GSE76211 licence not read
analysis object · 4 fields
state
complete
methods array · 2 items
[0] object · 10 fields
id
method-1
family
survival_analysis
specific
cox_proportional_hazards
label
Survival analysis
dsl_operations array · 1 item
[0]
cox_ph
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
time_to_event_with_censoring
evidence object · 3 fields
score
1
band
verbatim
quote
The Multivariate Cox proportional hazards regression model was used to construct the PI and ACPI model based on the factor correlated with survival.
[1] object · 10 fields
id
method-2
family
diagnostic_evaluation
specific
roc
label
Diagnostic test evaluation
dsl_operations array · 6 items
[0]
confusion_counts
[1]
roc_curve
[2]
sensitivity_specificity
[3]
solve_confusion_matrix
[4]
classification_metrics
[5]
published_precision_envelope
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
reference_standard_and_test
evidence object · 3 fields
score
0.8
band
high
quote
ROC curve
targets array · 0 items
gaps array · 0 items
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
true
required_operations array · 1 item
[0]
cox_ph
missing_operations array · 0 items
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: cox_proportional_hazards.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 15 items
[0]
GSE13507
[1]
GSE31684
[2]
GSE76211
[3]
GSE2109
[4]
GSE7476
[5]
GSE30522
[6]
GSE31189
[7]
GSE37815
[8]
GSE52519
[9]
GSE65635
[10]
GSE37817
[11]
GSE100926
[12]
GSE24152
[13]
GSE19915 (GPL3883 and GPL5186)
[14]
GSE40355
resolved_accessions array · 14 items
[0]
GSE13507
[1]
GSE31684
[2]
GSE76211
[3]
GSE2109
[4]
GSE7476
[5]
GSE30522
[6]
GSE31189
[7]
GSE37815
[8]
GSE52519
[9]
GSE65635
[10]
GSE37817
[11]
GSE100926
[12]
GSE24152
[13]
GSE40355
statements array · 1 item
[0]
The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.
basis
The paper names GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE40355 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 1 item
[0]
cox_ph
assets array · 6 items
[0]
source:pmid:31190871
[1]
data:geo:GSE100926
[2]
asset:table:pmid:31190871:1
[3]
asset:table:pmid:31190871:2
[4]
asset:table:pmid:31190871:3
[5]
asset:table:pmid:31190871:4
steps array · 1 item
[0]
run_analysis
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE100926
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-10-31T18:15:01Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
3
usage object · 3 fields
prompt_tokens
34891
completion_tokens
3754
cached_tokens
648
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:31190871
type
paper
label
pmid:31190871
[1] object · 3 fields
id
source:pmid:31190871
type
manuscript
label
PMID 31190871 full text
[2] object · 3 fields
id
data:geo:GSE100926
type
dataset
label
GEO GSE100926
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:31190871
type
paper
label
pmid:31190871
[1] object · 3 fields
id
source:pmid:31190871
type
manuscript
label
PMID 31190871 full text
[2] object · 3 fields
id
data:geo:GSE100926
type
dataset
label
GEO GSE100926
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-31190871
type
extraction
used array · 1 item
[0]
source:pmid:31190871
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE100926
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE100926
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:31190871
parent_hash
sha256:dfe5813d55e32f2ac36170f078df49a10e3d0c53dc7c2fbb07481797dc3500de
fork_of
null
gaps array · 32 items
[0]
asset:data:geo:GSE100926 licence not read
[1]
asset:data:geo:GSE100926 not downloaded
[2]
asset:data:geo:GSE13507 licence not read
[3]
asset:data:geo:GSE13507 not downloaded
[4]
asset:data:geo:GSE2109 licence not read
[5]
asset:data:geo:GSE2109 not downloaded
[6]
asset:data:geo:GSE24152 licence not read
[7]
asset:data:geo:GSE24152 not downloaded
[8]
asset:data:geo:GSE30522 licence not read
[9]
asset:data:geo:GSE30522 not downloaded
[10]
asset:data:geo:GSE31189 licence not read
[11]
asset:data:geo:GSE31189 not downloaded
[12]
asset:data:geo:GSE31684 licence not read
[13]
asset:data:geo:GSE31684 not downloaded
[14]
asset:data:geo:GSE37815 licence not read
[15]
asset:data:geo:GSE37815 not downloaded
[16]
asset:data:geo:GSE37817 licence not read
[17]
asset:data:geo:GSE37817 not downloaded
[18]
asset:data:geo:GSE40355 licence not read
[19]
asset:data:geo:GSE40355 not downloaded
[20]
asset:data:geo:GSE52519 licence not read
[21]
asset:data:geo:GSE52519 not downloaded
[22]
asset:data:geo:GSE65635 licence not read
[23]
asset:data:geo:GSE65635 not downloaded
[24]
asset:data:geo:GSE7476 licence not read
[25]
asset:data:geo:GSE7476 not downloaded
[26]
asset:data:geo:GSE76211 licence not read
[27]
asset:data:geo:GSE76211 not downloaded
[28]
execution.not_run
[29]
review.human_critique
[30]
review.independent_reader
[31]
review.machine_critique
assays array · 1 item
[0] object · 11 fields
role
analysis
definition_id
survival_analysis
definition_version
f2132e96ae6c7a4e
required_operations array · 1 item
[0]
cox_ph
support_state
supported
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
The Multivariate Cox proportional hazards regression model was used to construct the PI and ACPI model based on the factor correlated with survival.
order_basis
analysis_only
id
assay:1
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:31190871", "kind": "science-record", "revision": 7, "content_hash": "sha256:14f82c2b158fe41382998a8447c36ce6a0a959b40e52486e0bc31d593f8d30a0", "created_at": "2026-11-01T15:40:46Z", "updated_at": "2026-11-01T22:00:36Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Identification and validation of an individualized autophagy-clinical prognostic index in bladder cancer patients.", "doi": "10.2147/OTT.S197676", "pmid": "31190871", "authors": ["Shi-Shuo Wang", "Gang Chen", "Sheng-Hua Li", "Jin-Shu Pang", "Kai-Teng Cai", "Hai-Biao Yan", "Zhi-Guang Huang", "Rong-Quan He"], "journal": "OncoTargets and therapy", "year": 2019, "abstract": "Purpose: Autophagy is a major catabolic system by which eukaryotic cells undergo self-degradation of damaged, defective, or unwanted intracellular components. An abnormal autophagic level is implicated in the pathogenesis of multiple diseases, including cancers. The aim of this study is to explore the prognostic value of autophagy in bladder cancer (BC), which is a major cause of cancer-related death globally. Patients and methods: First, 27 differentially expressed autophagy-related genes (ARGs) were identified in BC patients based on The Cancer Genome Atlas (TCGA) database. Functional enrichment analyses hinted that autophagy may act in a tumor-suppressive role in the initiation of BC. Then, the Cox proportional hazard regression model were employed to identify three key prognostic ARGs (JUN, MYC, and ITGA3), which were related with overall survival (OS) significantly in BC. The three genes represented important clinical significance and prognostic value in BC. Then a prognostic index (PI) was constructed. Results: The PI was constructed based on the three genes, and significantly stratified BC patients into high- and low-risk groups in terms of OS (HR=1.610, 95% CI=1.200-2.160, P=0.002). PI remained as an independent prognostic factor in multivariate analyses (HR=2.355, 95% CI=1.483-3.739, P<0.001). When integrated with clinical characteristics of age and stage, an autophagy-clinical prognostic index (ACPI) was finally validated, which had improved performance in predicting OS of BC patients (HR=2.669, 95% CI=1.986-3.587, P<0.001). The ACPI was confirmed in datasets of GSE13507 (HR=7.389, 95% CI=3.645-14.980, P<0.001) and GSE31684 (HR=1.665, 95% CI=0.872-3.179, P=0.122). Conclusion: This study provides a potential prognostic signature for predicting prognosis of BC patients and molecular insights of autophagy in BC.", "claims": [{"id": "claim-method", "statement": "The Multivariate Cox proportional hazards regression model was used to construct the PI and ACPI model based on the factor correlated with survival.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:31190871", "locator": "sections[6] \"Statistical analysis\" paragraph 2", "quote": "The Multivariate Cox proportional hazards regression model was used to construct the PI and ACPI model based on the factor correlated with survival."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:31190871", "locator": "sections[17] \"Data sharing statement\" paragraph 2", "quote": "The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": null, "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:31190871"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE100926"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE100926"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:31190871", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.2147/OTT.S197676", "sha256": "sha256:350118c4196f1e39974dfcc2a08c632a0bebed08671afe9abe49f401caceb215", "bytes": 40573, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.2147/OTT.S197676", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC6526186", "source": "europe_pmc_fulltext", "coverage": "whole_body_without_references", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:GSE100926", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100926", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE100926", "version": null, "note": "The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM2696603", "GSM2696604", "GSM2696605", "GSM2696606", "GSM2696607", "GSM2696608"], "sample_count": 6, "group_sizes": null, "group_sizes_basis": null, "platform": "14550", "taxon": "Homo sapiens", "title": "Gene expression signatures for bladder cancer tissues and normal adjacent tissues.", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE13507", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13507", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE13507", "version": null, "note": "The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM340537", "GSM340538", "GSM340539", "GSM340540", "GSM340541", "GSM340542", "GSM340543", "GSM340544", "GSM340545", "GSM340546", "GSM340547", "GSM340548", "GSM340549", "GSM340550", "GSM340551", "GSM340552", "GSM340553", "GSM340554", "GSM340555", "GSM340556", "GSM340557", "GSM340558", "GSM340559", "GSM340560", "GSM340561", "GSM340562", "GSM340563", "GSM340564", "GSM340565", "GSM340566", "GSM340567", "GSM340568", "GSM340569", "GSM340570", "GSM340571", "GSM340572", "GSM340573", "GSM340574", "GSM340575", "GSM340576", "GSM340577", "GSM340578", "GSM340579", "GSM340580", "GSM340581", "GSM340582", "GSM340583", "GSM340584", "GSM340585", "GSM340586", "GSM340587", "GSM340588", "GSM340589", "GSM340590", "GSM340591", "GSM340592", "GSM340593", "GSM340594", "GSM340595", "GSM340596", "GSM340597", "GSM340598", "GSM340599", "GSM340600", "GSM340601", "GSM340602", "GSM340603", "GSM340604", "GSM340605", "GSM340606", "GSM340607", "GSM340608", "GSM340609", "GSM340610", "GSM340611", "GSM340612", "GSM340613", "GSM340614", "GSM340615", "GSM340616", "GSM340617", "GSM340618", "GSM340619", "GSM340620", "GSM340621", "GSM340622", "GSM340623", "GSM340624", "GSM340625", "GSM340626", "GSM340627", "GSM340628", "GSM340629", "GSM340630", "GSM340631", "GSM340632", "GSM340633", "GSM340634", "GSM340635", "GSM340636", "GSM340637", "GSM340638", "GSM340639", "GSM340640", "GSM340641", "GSM340642", "GSM340643", "GSM340644", "GSM340645", "GSM340646", "GSM340647", "GSM340648", "GSM340649", "GSM340650", "GSM340651", "GSM340652", "GSM340653", "GSM340654", "GSM340655", "GSM340656", "GSM340657", "GSM340658", "GSM340659", "GSM340660", "GSM340661", "GSM340662", "GSM340663", "GSM340664", "GSM340665", "GSM340666", "GSM340667", "GSM340668", "GSM340669", "GSM340670", "GSM340671", "GSM340672", "GSM340673", "GSM340674", "GSM340675", "GSM340676", "GSM340677", "GSM340678", "GSM340679", "GSM340680", "GSM340681", "GSM340682", "GSM340683", "GSM340684", "GSM340685", "GSM340686", "GSM340687", "GSM340688", "GSM340689", "GSM340690", "GSM340691", "GSM340692", "GSM340693", "GSM340694", "GSM340695", "GSM340696", "GSM340697", "GSM340698", "GSM340699", "GSM340700", "GSM340701", "GSM340702", "GSM340703", "GSM340704", "GSM340705", "GSM340706", "GSM340707", "GSM340708", "GSM340709", "GSM340710", "GSM340711", "GSM340712", "GSM340713", "GSM340714", "GSM340715", "GSM340716", "GSM340717", "GSM340718", "GSM340719", "GSM340720", "GSM340721", "GSM340722", "GSM340723", "GSM340724", "GSM340725", "GSM340726", "GSM340727", "GSM340728", "GSM340729", "GSM340730", "GSM340731", "GSM340732", "GSM340733", "GSM340734", "GSM340735", "GSM340736", "GSM340737", "GSM340738", "GSM340739", "GSM340740", "GSM340741", "GSM340742", "GSM340743", "GSM340744", "GSM340745", "GSM340746", "GSM340747", "GSM340748", "GSM340749", "GSM340750", "GSM340751", "GSM340752", "GSM340753", "GSM340754", "GSM340755", "GSM340756", "GSM340757", "GSM340758", "GSM340759", "GSM340760", "GSM340761", "GSM340762", "GSM340763", "GSM340764", "GSM340765", "GSM340766", "GSM340767", "GSM340768", "GSM340769", "GSM340770", "GSM340771", "GSM340772", "GSM340773", "GSM340774", "GSM340775", "GSM340776", "GSM340777", "GSM340778", "GSM340779", "GSM340780", "GSM340781", "GSM340782", "GSM340783", "GSM340784", "GSM340785", "GSM340786", "GSM340787", "GSM340788", "GSM340789", "GSM340790", "GSM340791", "GSM340792"], "sample_count": 256, "group_sizes": null, "group_sizes_basis": null, "platform": "6102", "taxon": "Homo sapiens", "title": "Predective Value of Prognosis-Related Gene Expression Study in Primary Bladder Cancer", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE2109", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2109", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE2109", "version": null, "note": "The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM102424", "GSM102425", "GSM102426", "GSM102427", "GSM102428", "GSM102429", "GSM102430", "GSM102431", "GSM102432", "GSM102433", "GSM102434", "GSM102435", "GSM102436", "GSM102437", "GSM102438", "GSM102439", "GSM102440", "GSM102441", "GSM102442", "GSM102443", "GSM102444", "GSM102445", "GSM102446", "GSM102447", "GSM102448", "GSM102449", "GSM102450", "GSM102451", "GSM102452", "GSM102453", "GSM102454", "GSM102455", "GSM102456", "GSM102457", "GSM102458", "GSM102459", "GSM102460", "GSM102461", "GSM102462", "GSM102463", "GSM102464", "GSM102465", "GSM102466", "GSM102467", "GSM102468", "GSM102469", "GSM102470", "GSM102471", "GSM102472", "GSM102473", "GSM102474", "GSM102475", "GSM102476", "GSM102477", "GSM102478", "GSM102479", "GSM102480", "GSM102481", "GSM102482", "GSM102483", "GSM102484", "GSM102485", "GSM102486", "GSM102487", "GSM102488", "GSM102489", "GSM102490", "GSM102491", "GSM102492", "GSM102493", "GSM102494", "GSM102495", "GSM102496", "GSM102497", "GSM102498", "GSM102499", "GSM102500", "GSM102501", "GSM102502", "GSM102503", "GSM102504", "GSM102505", "GSM102506", "GSM102507", "GSM102508", "GSM102509", "GSM102510", "GSM102511", "GSM102512", "GSM102513", "GSM102514", "GSM102515", "GSM102516", "GSM102517", "GSM102518", "GSM102519", "GSM102520", "GSM102521", "GSM102522", "GSM102523", "GSM102524", "GSM102525", "GSM102526", "GSM102527", "GSM102528", "GSM102529", "GSM102530", "GSM102531", "GSM102532", "GSM102533", "GSM102534", "GSM102535", "GSM102536", "GSM102537", "GSM102538", "GSM102539", "GSM102540", "GSM102541", "GSM102542", "GSM102543", "GSM102544", "GSM102545", "GSM102546", "GSM102547", "GSM102548", "GSM102549", "GSM102550", "GSM102551", "GSM102552", "GSM102553", "GSM102554", "GSM102555", "GSM102556", "GSM102557", "GSM102558", "GSM102559", "GSM102560", "GSM102561", "GSM102562", "GSM102563", "GSM102564", "GSM102565", "GSM102566", "GSM102567", "GSM102568", "GSM102569", "GSM102570", "GSM102571", "GSM102572", "GSM102573", "GSM102574", "GSM102575", "GSM102576", "GSM102577", "GSM102578", "GSM102579", "GSM102580", "GSM102581", "GSM102582", "GSM102583", "GSM117576", "GSM117577", "GSM117578", "GSM117579", "GSM117580", "GSM117581", "GSM117582", "GSM117583", "GSM117584", "GSM117585", "GSM117586", "GSM117587", "GSM117588", "GSM117589", "GSM117590", "GSM117591", "GSM117592", "GSM117600", "GSM117610", "GSM117626", "GSM117629", "GSM117632", "GSM117635", "GSM117639", "GSM117642", "GSM117643", "GSM117644", "GSM117645", "GSM117646", "GSM117647", "GSM117648", "GSM117649", "GSM117650", "GSM117651", "GSM117652", "GSM117653", "GSM117655", "GSM117656", "GSM117657", "GSM117658", "GSM117659", "GSM117660", "GSM117661", "GSM117662", 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"GSM117741", "GSM117742", "GSM117743", "GSM117744", "GSM117745", "GSM117746", "GSM117747", "GSM117748", "GSM117749", "GSM117750", "GSM117751", "GSM117752", "GSM117753", "GSM117754", "GSM117755", "GSM117756", "GSM117757", "GSM117758", "GSM117759", "GSM117760", "GSM117761", "GSM117762", "GSM117763", "GSM117765", "GSM117766", "GSM117767", "GSM117768", "GSM117769", "GSM117770", "GSM117771", "GSM117772", "GSM117774", "GSM117775", "GSM117776", "GSM117777", "GSM137895", "GSM137896", "GSM137897", "GSM137898", "GSM137899", "GSM137900", "GSM137901", "GSM137902", "GSM137903", "GSM137904", "GSM137905", "GSM137906", "GSM137907", "GSM137908", "GSM137909", "GSM137910", "GSM137911", "GSM137912", "GSM137913", "GSM137914", "GSM137915", "GSM137916", "GSM137917", "GSM137918", "GSM137919", "GSM137920", "GSM137921", "GSM137922", "GSM137923", "GSM137924", "GSM137925", "GSM137926", "GSM137927", "GSM137928", "GSM137929", "GSM137930", "GSM137931", "GSM137932", "GSM137933", "GSM137934", "GSM137935", "GSM137936", "GSM137937", "GSM137938", "GSM137939", "GSM137940", "GSM137941", "GSM137942", "GSM137943", "GSM137944", "GSM137945", "GSM137946", "GSM137947", "GSM137948", "GSM137949", "GSM137950", "GSM137951", "GSM137952", "GSM137953", "GSM137954", "GSM137955", "GSM137956", "GSM137957", "GSM137958", "GSM137959", "GSM137960", "GSM137961", "GSM137962", "GSM137963", "GSM137964", "GSM137965", "GSM137966", "GSM137967", "GSM137968", "GSM137969", "GSM137970", "GSM137971", "GSM137972", "GSM137973", "GSM137974", "GSM137975", "GSM137976", "GSM137977", "GSM137978", "GSM137979", "GSM137980", "GSM137981", "GSM137982", "GSM137983", "GSM137984", "GSM137985", "GSM137986", "GSM137987", "GSM137988", "GSM137989", "GSM137990", "GSM137991", "GSM137992", "GSM137993", "GSM137994", "GSM137995", "GSM137996", "GSM137997", "GSM137998", "GSM137999", "GSM138000", "GSM138001", "GSM138002", "GSM138003", "GSM138004", "GSM138005", "GSM138006", "GSM138007", "GSM138008", "GSM138009", "GSM138010", "GSM138011", "GSM138012", "GSM138013", 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"GSM152677", "GSM152678", "GSM152679", "GSM152680", "GSM152681", "GSM152682", "GSM152683", "GSM152684", "GSM152685", "GSM152686", "GSM152687", "GSM152688", "GSM152689", "GSM152690", "GSM152691", "GSM152692", "GSM152693", "GSM152694", "GSM152695", "GSM152696", "GSM152697", "GSM152698", "GSM152699", "GSM152700", "GSM152701", "GSM152702", "GSM152703", "GSM152704", "GSM152705", "GSM152706", "GSM152707", "GSM152708", "GSM152709", "GSM152710", "GSM152711", "GSM152712", "GSM152713", "GSM152714", "GSM152715", "GSM152716", "GSM152717", "GSM152718", "GSM152719", "GSM152720", "GSM152721", "GSM152722", "GSM152723", "GSM152724", "GSM152725", "GSM152726", "GSM152727", "GSM152728", "GSM152729", "GSM152730", "GSM152731", "GSM152732", "GSM152733", "GSM152734", "GSM152735", "GSM152736", "GSM152737", "GSM152738", "GSM152739", "GSM152740", "GSM152741", "GSM152742", "GSM152743", "GSM152744", "GSM152745", "GSM152746", "GSM152747", "GSM152748", "GSM152749", "GSM152750", "GSM152751", "GSM152752", "GSM152753", "GSM152754", "GSM152755", "GSM152756", "GSM152757", "GSM152758", "GSM152759", "GSM152760", "GSM152761", "GSM152762", "GSM152763", "GSM152764", "GSM152765", "GSM152766", "GSM152767", "GSM152768", "GSM152769", "GSM152770", "GSM152771", "GSM152772", "GSM152773", "GSM152774", "GSM152775", "GSM152776", "GSM152777", "GSM152778", "GSM152779", "GSM152780", "GSM152781", "GSM152782", "GSM152783", "GSM152784", "GSM152785", "GSM152786", "GSM152787", "GSM152788", "GSM152789", "GSM152790", "GSM152791", "GSM152792", "GSM152793", "GSM152794", "GSM152795", "GSM152796", "GSM152797", "GSM152798", "GSM152799", "GSM152800", "GSM152801", "GSM152802", "GSM152803", "GSM179778", "GSM179779", "GSM179780", "GSM179781", "GSM179782", "GSM179783", "GSM179784", "GSM179785", "GSM179786", "GSM179787", "GSM179788", "GSM179789", "GSM179790", "GSM179791", "GSM179792", "GSM179793", "GSM179794", "GSM179795", "GSM179796", "GSM179797", "GSM179798", "GSM179799", "GSM179800", "GSM179801", "GSM179802", "GSM179803", "GSM179804", "GSM179805", "GSM179806", "GSM179807", "GSM179808", "GSM179809", "GSM179810", "GSM179811", "GSM179812", "GSM179813", "GSM179814", "GSM179815", "GSM179816", "GSM179817", "GSM179818", "GSM179819", "GSM179820", "GSM179821", "GSM179822", "GSM179823", "GSM179824", "GSM179825", "GSM179826", "GSM179827", "GSM179828", "GSM179829", "GSM179830", "GSM179831", "GSM179832", "GSM179833", "GSM179834", "GSM179835", "GSM179836", "GSM179837", "GSM179838", "GSM179839", "GSM179840", "GSM179841", "GSM179842", "GSM179843", "GSM179844", "GSM179845", "GSM179846", "GSM179847", "GSM179848", "GSM179849", "GSM179850", "GSM179851", "GSM179852", "GSM179853", "GSM179854", "GSM179855", "GSM179856", "GSM179857", "GSM179858", "GSM179859", "GSM179860", "GSM179861", "GSM179862", "GSM179863", "GSM179864", "GSM179865", "GSM179866", "GSM179867", "GSM179868", "GSM179869", "GSM179870", "GSM179871", "GSM179872", "GSM179873", "GSM179874", "GSM179875", "GSM179876", "GSM179877", "GSM179878", "GSM179879", "GSM179880", "GSM179881", "GSM179882", "GSM179883", "GSM179884", "GSM179885", "GSM179886", "GSM179887", "GSM179888", "GSM179889", "GSM179890", "GSM179891", "GSM179892", "GSM179893", "GSM179894", "GSM179895", "GSM179896", "GSM179897", "GSM179898", "GSM179899", "GSM179900", "GSM179901", "GSM179902", "GSM179903", "GSM179904", "GSM179905", "GSM179906", "GSM179907", "GSM179908", "GSM179909", "GSM179910", "GSM179911", "GSM179912", "GSM179913", "GSM179914", "GSM179915", "GSM179916", "GSM179917", "GSM179918", "GSM179919", "GSM179920", "GSM179921", "GSM179922", "GSM179923", "GSM179924", "GSM179925", "GSM179926", "GSM179927", "GSM179928", "GSM179929", "GSM179930", "GSM179931", "GSM179932", "GSM179933", "GSM179934", "GSM179935", "GSM179936", "GSM179937", "GSM179938", "GSM179939", "GSM179940", "GSM179941", "GSM179942", "GSM179943", "GSM179944", "GSM179945", "GSM179946", "GSM179947", "GSM179948", "GSM179949", "GSM179950", "GSM179951", "GSM179952", "GSM179953", "GSM179954", "GSM179955", "GSM179956", "GSM179957", "GSM203622", "GSM203623", "GSM203624", "GSM203625", "GSM203626", "GSM203627", "GSM203628", "GSM203629", "GSM203630", "GSM203631", "GSM203632", "GSM203633", "GSM203634", "GSM203635", "GSM203636", "GSM203637", "GSM203638", "GSM203639", "GSM203640", "GSM203641", "GSM203642", "GSM203643", "GSM203644", "GSM203645", "GSM203646", "GSM203647", "GSM203648", "GSM203649", "GSM203650", "GSM203651", "GSM203652", "GSM203653", "GSM203654", "GSM203655", "GSM203656", "GSM203657", "GSM203658", "GSM203659", "GSM203660", "GSM203661", "GSM203662", "GSM203663", "GSM203664", "GSM203665", "GSM203666", "GSM203667", "GSM203668", "GSM203669", "GSM203670", "GSM203671", "GSM203672", "GSM203673", "GSM203674", "GSM203675", "GSM203676", "GSM203677", "GSM203678", "GSM203679", "GSM203680", "GSM203681", "GSM203682", "GSM203683", "GSM203684", "GSM203685", "GSM203686", "GSM203687", "GSM203688", "GSM203689", "GSM203690", "GSM203691", "GSM203692", "GSM203693", "GSM203694", "GSM203695", "GSM203696", "GSM203697", "GSM203698", "GSM203699", "GSM203700", "GSM203701", "GSM203702", "GSM203703", "GSM203704", "GSM203705", "GSM203706", "GSM203707", "GSM203708", "GSM203709", "GSM203710", "GSM203711", "GSM203712", "GSM203713", "GSM203714", "GSM203715", "GSM203716", "GSM203717", "GSM203718", "GSM203719", "GSM203720", "GSM203721", "GSM203722", "GSM203723", "GSM203724", "GSM203725", "GSM203726", "GSM203727", "GSM203728", "GSM203729", "GSM203730", "GSM203731", "GSM203732", "GSM203733", "GSM203734", "GSM203735", "GSM203736", "GSM203737", "GSM203738", "GSM203739", "GSM203740", "GSM203741", "GSM203742", "GSM203743", "GSM203744", "GSM203745", "GSM203746", "GSM203747", "GSM203748", "GSM203749", "GSM203750", "GSM203751", "GSM203752", "GSM203753", "GSM203754", "GSM203755", "GSM203756", "GSM203757", "GSM203758", "GSM203759", "GSM203760", "GSM203761", "GSM203762", "GSM203763", "GSM203764", "GSM203765", "GSM203766", "GSM203767", "GSM203768", "GSM203769", "GSM203770", "GSM203771", "GSM203772", "GSM203773", "GSM203774", "GSM203775", "GSM203776", "GSM203777", "GSM203778", "GSM203779", "GSM203780", "GSM203781", "GSM203782", "GSM203783", "GSM203784", "GSM203785", "GSM203786", "GSM203787", "GSM203788", "GSM203789", "GSM203790", "GSM203791", "GSM203792", "GSM203793", "GSM203794", "GSM203795", "GSM203796", "GSM203797", "GSM203798", "GSM203799", "GSM203800", "GSM203801", "GSM231868", "GSM231869", "GSM231870", "GSM231871", "GSM231872", "GSM231873", "GSM231874", "GSM231875", "GSM231876", "GSM231877", "GSM231878", "GSM231879", "GSM231880", "GSM231881", "GSM231882", "GSM231883", "GSM231884", "GSM231885", "GSM231886", "GSM231887", "GSM231888", "GSM231889", "GSM231890", "GSM231891", "GSM231892", "GSM231893", "GSM231894", "GSM231895", "GSM231896", "GSM231897", "GSM231898", "GSM231899", "GSM231900", "GSM231901", "GSM231902", "GSM231903", "GSM231904", "GSM231905", "GSM231906", "GSM231907", "GSM231908", "GSM231909", "GSM231910", "GSM231911", "GSM231912", "GSM231913", "GSM231914", "GSM231915", "GSM231916", "GSM231917", "GSM231918", "GSM231919", "GSM231920", "GSM231921", "GSM231922", "GSM231923", "GSM231924", "GSM231925", "GSM231926", "GSM231927", "GSM231928", "GSM231929", "GSM231930", "GSM231931", "GSM231932", "GSM231933", "GSM231934", "GSM231935", "GSM231936", "GSM231937", "GSM231938", "GSM231939", "GSM231940", "GSM231941", "GSM231942", "GSM231943", "GSM231944", "GSM231945", "GSM231946", "GSM231947", "GSM231948", "GSM231949", "GSM231950", "GSM231951", "GSM231952", "GSM231953", "GSM231954", "GSM231955", "GSM231956", "GSM231957", "GSM231958", "GSM231959", "GSM231960", "GSM231961", "GSM231962", "GSM231963", "GSM231964", "GSM231965", "GSM231966", "GSM231967", "GSM231968", "GSM231969", "GSM231970", "GSM231971", "GSM231972", "GSM231973", "GSM231974", "GSM231975", "GSM231976", "GSM231977", "GSM231978", "GSM231979", "GSM231980", "GSM231981", "GSM231982", "GSM231983", "GSM231984", "GSM231985", "GSM231986", "GSM231987", "GSM231988", "GSM231989", "GSM231990", "GSM231991", "GSM231992", "GSM277677", "GSM277678", "GSM277679", "GSM277680", "GSM277681", "GSM277682", "GSM277683", "GSM277684", "GSM277685", "GSM277686", "GSM277687", "GSM277688", "GSM277689", "GSM277690", "GSM277691", "GSM277692", "GSM277693", "GSM277694", "GSM277695", "GSM277696", "GSM277697", "GSM277698", "GSM277699", "GSM277700", "GSM277701", "GSM277702", "GSM277703", "GSM277704", "GSM277705", "GSM277706", "GSM277707", "GSM277708", "GSM277709", "GSM277710", "GSM277711", "GSM277712", "GSM277713", "GSM277714", "GSM277715", "GSM277716", "GSM277717", "GSM277718", "GSM277719", "GSM277720", "GSM277721", "GSM277722", "GSM277723", "GSM277724", "GSM277725", "GSM277726", "GSM277727", "GSM277728", "GSM277729", "GSM277730", "GSM277731", "GSM277732", "GSM277733", "GSM277734", "GSM277735", "GSM277736", "GSM277737", "GSM277738", "GSM301651", "GSM301652", "GSM301653", "GSM301654", "GSM301655", "GSM301656", "GSM301657", "GSM301658", "GSM301659", "GSM301660", "GSM301661", "GSM301662", "GSM301663", "GSM301664", "GSM301665", "GSM301666", "GSM301667", "GSM301668", "GSM301669", "GSM301670", "GSM301671", "GSM301672", "GSM301673", "GSM301674", "GSM301675", "GSM301676", "GSM301677", "GSM301678", "GSM301679", "GSM301680", "GSM301681", "GSM301682", "GSM301683", "GSM301684", "GSM301685", "GSM301686", "GSM301687", "GSM301688", "GSM301689", "GSM301690", "GSM301691", "GSM301692", "GSM301693", "GSM301694", "GSM301695", "GSM301696", "GSM301697", "GSM301698", "GSM301699", "GSM301700", "GSM301701", "GSM301702", "GSM301703", "GSM301704", "GSM301705", "GSM301706", "GSM301707", "GSM301708", "GSM301709", "GSM301710", "GSM301711", "GSM301712", "GSM325786", "GSM325787", "GSM325788", "GSM325789", "GSM325790", "GSM325791", "GSM325792", "GSM325793", "GSM325794", "GSM325795", "GSM325796", "GSM325797", "GSM325798", "GSM325799", "GSM325800", "GSM325801", "GSM325802", "GSM325803", "GSM325804", "GSM325805", "GSM325806", "GSM325807", "GSM325808", "GSM325809", "GSM325810", "GSM325811", "GSM325812", "GSM325813", "GSM325814", "GSM325815", "GSM325816", "GSM325817", "GSM325818", "GSM325819", "GSM325820", "GSM325821", "GSM325822", "GSM325823", "GSM325824", "GSM325825", "GSM325826", "GSM325827", "GSM325828", "GSM325829", "GSM325830", "GSM325831", "GSM325832", "GSM325833", "GSM325834", "GSM325835", "GSM325836", "GSM325837", "GSM325838", "GSM325839", "GSM325840", "GSM325841", "GSM325842", "GSM325843", "GSM325844", "GSM325845", "GSM353881", "GSM353882", "GSM353883", "GSM353884", "GSM353885", "GSM353886", "GSM353887", "GSM353888", "GSM353889", "GSM353890", "GSM353891", "GSM353892", "GSM353893", "GSM353894", "GSM353895", "GSM353896", "GSM353897", "GSM353898", "GSM353899", "GSM353900", "GSM353901", "GSM353902", "GSM353903", "GSM353904", "GSM353905", "GSM353906", "GSM353907", "GSM353908", "GSM353909", "GSM353910", "GSM353911", "GSM353912", "GSM353913", "GSM353914", "GSM353915", "GSM353916", "GSM353917", "GSM353918", "GSM353919", "GSM353920", "GSM353921", "GSM353922", "GSM353923", "GSM353924", "GSM353925", "GSM353926", "GSM353927", "GSM353928", "GSM353929", "GSM353930", "GSM353931", "GSM353932", "GSM353933", "GSM353934", "GSM353935", "GSM353936", "GSM353937", "GSM353938", "GSM353939", "GSM353940", "GSM353941", "GSM353942", "GSM353943", "GSM38051", "GSM38052", "GSM38053", "GSM38054", "GSM38055", "GSM38056", "GSM38057", "GSM38058", "GSM38059", "GSM38060", "GSM38061", "GSM38062", "GSM38063", "GSM38064", "GSM38065", "GSM38066", "GSM38067", "GSM38068", "GSM38069", "GSM38070", "GSM38071", "GSM38072", "GSM38073", "GSM38074", "GSM38075", "GSM38076", "GSM38077", "GSM38078", "GSM38079", "GSM38080", "GSM38081", "GSM38082", "GSM38083", "GSM38084", "GSM38085", "GSM38086", "GSM38087", "GSM38088", "GSM38089", "GSM38090", "GSM38091", "GSM38092", "GSM38093", "GSM38094", "GSM38095", "GSM38096", "GSM38097", "GSM38098", "GSM38099", "GSM38100", "GSM38101", "GSM38102", "GSM38103", "GSM38104", "GSM38105", "GSM38106", "GSM38107", "GSM38108", "GSM38109", "GSM38110", "GSM46814", "GSM46815", "GSM46816", "GSM46817", "GSM46818", "GSM46819", "GSM46820", "GSM46821", "GSM46822", "GSM46823", "GSM46824", "GSM46825", "GSM46826", "GSM46827", "GSM46828", "GSM46829", "GSM46830", "GSM46831", "GSM46832", "GSM46833", "GSM46834", "GSM46835", "GSM46836", "GSM46837", "GSM46838", "GSM46839", "GSM46840", "GSM46841", "GSM46842", "GSM46843", "GSM46844", "GSM46845", "GSM46846", "GSM46847", "GSM46848", "GSM46849", "GSM46850", "GSM46851", "GSM46852", "GSM46853", "GSM46854", "GSM46855", "GSM46856", "GSM46857", "GSM46858", "GSM46859", "GSM46860", "GSM46861", "GSM46862", "GSM46863", "GSM46864", "GSM46865", "GSM46866", "GSM46867", "GSM46868", "GSM46869", "GSM46870", "GSM46871", "GSM46872", "GSM46873", "GSM46874", "GSM46875", "GSM46876", "GSM46877", "GSM46878", "GSM46879", "GSM46880", "GSM46881", "GSM46882", "GSM46883", "GSM46884", "GSM46885", "GSM46886", "GSM46887", "GSM46888", "GSM46889", "GSM46890", "GSM46891", "GSM46892", "GSM46893", "GSM46894", "GSM46895", "GSM46896", "GSM46897", "GSM46898", "GSM46899", "GSM46900", "GSM46901", "GSM46902", "GSM46903", "GSM46904", "GSM46905", "GSM46906", 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The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). 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The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). 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The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM1976573", "GSM1976574", "GSM1976575", "GSM1976577", "GSM1976579", "GSM1976580"], "sample_count": 6, "group_sizes": null, "group_sizes_basis": null, "platform": "17586", "taxon": "Homo sapiens", "title": "mRNA Expression data from bladder cancer and normal bladder tissue", "resolution_checked_at": "2026-11-01T15:39:55Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "asset:table:pmid:31190871:1", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:e960820ce9a6f3142fbdb0dec88b5b81ffd43104040007f915439492b3b6088b", "bytes": 4950, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[9]/table-wrap[1]#T0001", "version": null, "note": "GO and KEGG analysis of differentially expressed autophagy-related genes", "structure": {"pmcid": "PMC6526186", "section_index": 9, "section_title": "Functional annotation of the differentially expressed ARGs", "row_count": 41, "column_count": 5}, "table": {"label": "Table 1", "caption": "GO and KEGG analysis of differentially expressed autophagy-related genes", "rows": [["Category", "ID", "Term", "P-value", "Genes"], ["Biological Process", "GO:0042493", "Response to drug", "4.44E−06", "FOS, CDKN1A, JUN, BCL2, ITGA3, MYC, TP73"], ["Biological Process", "GO:0010332", "Response to gamma radiation", "1.27E−05", "CCL2, BCL2, MYC, TP73"], ["Biological Process", "GO:0006915", "Apoptotic process", "1.36E−05", "DLC1, EVA1A, CDKN2A, CXCR4, BCL2, BIRC5, PPP1R15A, TP73"], ["Biological Process", "GO:0007346", "Regulation of mitotic cell cycle", "2.78E−05", "CDKN1A, BIRC5, MYC, TP73"], ["Biological Process", "GO:0043524", "Negative regulation of neuron apoptotic process", "4.06E−05", "CCL2, JUN, BCL2, BIRC5, TP73"], ["Biological Process", "GO:0007050", "Cell cycle arrest", "5.25E−05", "CDKN1A, CDKN2A, PPP1R15A, MYC, TP73"], ["Biological Process", "GO:0006974", "Cellular response to DNA damage stimulus", "2.36E−04", "CDKN1A, BCL2, PPP1R15A, MYC, TP73"], ["Biological Process", "GO:0001836", "Release of cytochrome c from mitochondria", "5.28E−04", "BID, JUN, BCL2"], ["Biological Process", "GO:0045893", "Positive regulation of transcription, DNA-templated", "8.50E−04", "FOS, CDKN2A, JUN, MYC, TP53INP2, TP73"], ["Biological Process", "GO:1900740", "Positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway", "9.02E−04", "BID, BCL2, TP73"], ["Cellular Component", "GO:0005829", "Cytosol", "3.94E−06", "BID, DLC1, NAMPT, GABARAPL1, BIRC5, TP73, FOS, CDKN1A, EIF4EBP1, CDKN2A, JUN, BCL2, BAG3, MYC, PPP1R15A, TP53INP2"], ["Cellular Component", "GO:0043234", "Protein complex", "0.002235", "EIF4EBP1, CDKN1A, CDKN2A, MYC, ITPR1"], ["Cellular Component", "GO:0005739", "Mitochondrion", "0.007959", "BID, GABARAPL1, CDKN2A, BCL2, PPP1R15A, MYC, TP73"], ["Cellular Component", "GO:0005654", "Nucleoplasm", "0.008942", "NAMPT, FOS, EIF4EBP1, CDKN1A, CDKN2A, JUN, HSPB8, BIRC5, MYC, TP73"], ["Cellular Component", "GO:0005741", "Mitochondrial outer membrane", "0.017612", "BID, BCL2, PPP1R15A"], ["Cellular Component", "GO:0030054", "Cell junction", "0.024203", "NAMPT, CXCR4, ITGB4, TP73"], ["Cellular Component", "GO:0005783", "Endoplasmic reticulum", "0.025005", "FOS, GABARAPL1, BCL2, PPP1R15A, ITPR1"], ["Cellular Component", "GO:0005667", "Transcription factor complex", "0.028532", "FOS, JUN, TP73"], ["Cellular Component", "GO:0005794", "Golgi apparatus", "0.028578", "GABARAPL1, HSPB8, RGS19, PPP1R15A"], ["Cellular Component", "GO:0008305", "Integrin complex", "0.036412", "ITGB4, ITGA3"], ["Cellular Component", "GO:0005515", "Protein binding", "3.97E−05", "BID, DLC1, NAMPT, GABARAPL1, ITGB4, RGS19, BIRC5, ITGA3, CX3CL1, TP73, ITPR1, FOS, CDKN1A, EIF4EBP1, CDKN2A, CXCR4, JUN, HSPB8, BCL2, BAG3, MYC, PPP1R15A, TP53INP2"], ["Molecular Function", "GO:0008134", "Transcription factor binding", "4.25E−05", "FOS, CDKN2A, JUN, BCL2, MYC, TP73"], ["Molecular Function", "GO:0031625", "Ubiquitin protein ligase binding", "6.65E−04", "BID, GABARAPL1, CDKN1A, CXCR4, BCL2"], ["Molecular Function", "GO:0046982", "Protein heterodimerization activity", "0.003898", "FOS, JUN, BCL2, BIRC5, ITGA3"], ["Molecular Function", "GO:0001077", "Transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding", "0.004395", "FOS, JUN, MYC, TP73"], ["Molecular Function", "GO:0043565", "Sequence-specific DNA binding", "0.005716", "FOS, JUN, BCL2, MYC, TP73"], ["Molecular Function", "GO:0000978", "RNA polymerase II core promoter proximal region sequence-specific DNA binding", "0.013453", "FOS, JUN, MYC, TP73"], ["Molecular Function", "GO:0004861", "Cyclin-dependent protein serine/threonine kinase inhibitor activity", "0.015533", "CDKN1A, CDKN2A"], ["Molecular Function", "GO:0019901", "Protein kinase binding", "0.015684", "CDKN2A, RGS19, PPP1R15A, TP73"], ["Molecular Function", "GO:0042802", "Identical protein binding", "0.020127", "JUN, HSPB8, BCL2, BIRC5, TP73"], ["KEGG PATHWAY", "hsa05200", "Pathways in cancer", "3.16E−07", "BID, FOS, CDKN1A, CDKN2A, CXCR4, JUN, BCL2, BIRC5, ITGA3, MYC"], ["KEGG PATHWAY", "hsa05210", "Colorectal cancer", "2.06E−05", "FOS, JUN, BCL2, BIRC5, MYC"], ["KEGG PATHWAY", "hsa05161", "Hepatitis B", "3.48E−05", "FOS, CDKN1A, JUN, BCL2, BIRC5, MYC"], ["KEGG PATHWAY", "hsa04012", "ErbB signaling pathway", "7.87E−05", "EIF4EBP1, CDKN1A, JUN, NRG2, MYC"], ["KEGG PATHWAY", "hsa04115", "p53 signaling pathway", "7.56E−04", "BID, CDKN1A, CDKN2A, TP73"], ["KEGG PATHWAY", "hsa04151", "PI3K-Akt signaling pathway", "0.001961", "EIF4EBP1, CDKN1A, BCL2, ITGB4, ITGA3, MYC"], ["KEGG PATHWAY", "hsa04668", "TNF signaling pathway", "0.002843", "FOS, CCL2, JUN, CX3CL1"], ["KEGG PATHWAY", "hsa05166", "HTLV-I infection", "0.004594", "FOS, CDKN1A, CDKN2A, JUN, MYC"], ["KEGG PATHWAY", "hsa05219", "Bladder cancer", "0.00551", "CDKN1A, CDKN2A, MYC"], ["KEGG PATHWAY", "hsa04921", "Oxytocin signaling pathway", "0.008685", "FOS, CDKN1A, JUN, ITPR1"]], "row_count": 41, "column_count": 5, "numeric_cells": 106, "header_rows": 1, "locator": "section[9]/table-wrap[1]#T0001"}}, {"id": "asset:table:pmid:31190871:2", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:85290b1004f06323d417f99574c28833ca5b20ce382eb206080b666856c474f4", "bytes": 4540, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[10]/table-wrap[1]#T0002", "version": null, "note": "Expression and Cox regression analysis data of the prognosis-related ARGs in bladder cancer by TCGA", "structure": {"pmcid": "PMC6526186", "section_index": 10, "section_title": "Identification of prognostic ARGs", "row_count": 56, "column_count": 10}, "table": {"label": "Table 2", "caption": "Expression and Cox regression analysis data of the prognosis-related ARGs in bladder cancer by TCGA", "rows": [["Gene", "Expression", "Univariate Cox", "Multivariate Cox"], ["mean±SD", "P-value", "HR", "z", "P-value", "HR", "z", "P-value"], ["JUN", "Tumor", "13.002773±1.164031", "<0.0001", "1.198762", "2.651598", "0.008011", "1.1786", "2.38", "0.017"], ["", "Non-tumor", "15.027896±1.185059", "", "", "", "", "", "", ""], ["MYC", "Tumor", "11.541411±1.554496", "<0.0001", "1.14059", "2.606545", "0.009146", "1.1682", "2.97", "0.003"], ["", "Non-tumor", "13.287664±1.265550", "", "", "", "", "", "", ""], ["ITGA3", "Tumor", "13.822128±1.515658", "<0.0001", "0.907077", "−2.0139", "0.04402", "−0.1505", "−2.97", "0.003"], ["", "Non-tumor", "12.975430±1.091134", "", "", "", "", "", "", ""], ["NAMPT", "Tumor", "12.330813±1.009040", "<0.0001", "1.172207", "2.001379", "0.045352", "", "", "0.340"], ["", "Non-tumor", "13.308780±1.459465", "", "", "", "", "", "", ""], ["FOS", "Tumor", "13.343147±1.608937", "<0.0001", "1.063323", "1.267733", "0.204893", "", "", ""], ["", "Non-tumor", "16.672991±1.404332", "", "", "", "", "", "", ""], ["HSPB8", "Tumor", "10.106659±2.154647", "<0.0001", "1.068919", "1.911278", "0.055969", "", "", ""], ["", "Non-tumor", "13.749171±1.702493", "", "", "", "", "", "", ""], ["CDKN1A", "Tumor", "13.124746±1.128535", "<0.0001", "1.01594", "0.22579", "0.821364", "", "", ""], ["", "Non-tumor", "14.389922±1.347070", "", "", "", "", "", "", ""], ["ITPR1", "Tumor", "9.5318665±1.169013", "<0.0001", "0.997873", "−0.03415", "0.972754", "", "", ""], ["", "Non-tumor", "11.929274±1.585768", "", "", "", "", "", "", ""], ["TP53INP2", "Tumor", "10.462387±0.976958", "<0.0001", "1.119264", "1.518161", "0.128974", "", "", ""], ["", "Non-tumor", "12.653637±1.109542", "", "", "", "", "", "", ""], ["BIRC5", "Tumor", "11.387251±1.094559", "<0.0001", "1.06901", "0.897696", "0.369347", "", "", ""], ["", "Non-tumor", "7.9468232±2.565110", "", "", "", "", "", "", ""], ["PPP1R15A", "Tumor", "12.441886±0.891543", "<0.0001", "0.940067", "−0.71379", "0.475356", "", "", ""], ["", "Non-tumor", "13.738993±1.001618", "", "", "", "", "", "", ""], ["DLC1", "Tumor", "9.5131164±1.257221", "<0.0001", "1.021996", "0.347978", "0.727857", "", "", ""], ["", "Non-tumor", "11.242183±0.995269", "", "", "", "", "", "", ""], ["BAG3", "Tumor", "11.719572±0.731981", "<0.0001", "1.192655", "1.702932", "0.088581", "", "", ""], ["", "Non-tumor", "12.704785±1.108736", "", "", "", "", "", "", ""], ["GABARAPL1", "Tumor", "11.058632±0.792235", "<0.0001", "1.051224", "0.525272", "0.599394", "", "", ""], ["", "Non-tumor", "12.255963±0.614109", "", "", "", "", "", "", ""], ["BCL2", "Tumor", "8.3027604±1.178505", "<0.0001", "1.051513", "0.768008", "0.442482", "", "", ""], ["", "Non-tumor", "10.256868±0.425816", "", "", "", "", "", "", ""], ["CDKN2A", "Tumor", "8.9951212±3.453185", "<0.0001", "0.990449", "−0.44257", "0.658076", "", "", ""], ["", "Non-tumor", "6.6235955±1.685343", "", "", "", "", "", "", ""], ["CCL2", "Tumor", "9.0438964±1.821760", "<0.0001", "1.053817", "1.273601", "0.202805", "", "", ""], ["", "Non-tumor", "11.704824±2.040782", "", "", "", "", "", "", ""], ["PRKN", "Tumor", "5.2978598±1.521700", "<0.0001", "1.009973", "0.201647", "0.840193", "", "", ""], ["", "Non-tumor", "8.1483213±1.213423", "", "", "", "", "", "", ""], ["BID", "Tumor", "11.340986±0.737984", "<0.0001", "0.839371", "−1.70367", "0.088442", "", "", ""], ["", "Non-tumor", "10.105586±0.651137", "", "", "", "", "", "", ""], ["EVA1A", "Tumor", "6.5437907±2.147278", "<0.0001", "1.057202", "1.528728", "0.126332", "", "", ""], ["", "Non-tumor", "3.8921911±1.267249", "", "", "", "", "", "", ""], ["CXCR4", "Tumor", "10.259886±1.380760", "<0.0001", "1.013263", "0.261675", "0.793572", "", "", ""], ["", "Non-tumor", "11.447608±1.958345", "", "", "", "", "", "", ""], ["NRG2", "Tumor", "4.7761532±2.145474", "<0.0001", "0.985697", "−0.43265", "0.665266", "", "", ""], ["", "Non-tumor", "7.9643803±1.000720", "", "", "", "", "", "", ""], ["TP73", "Tumor", "7.9164301±2.009466", "<0.0001", "0.984879", "−0.3943", "0.69336", "", "", ""], ["", "Non-tumor", "5.9146373±2.363484", "", "", "", "", "", "", ""], ["RGS19", "Tumor", "9.9259644±0.729683", "<0.0001", "1.143028", "1.313883", "0.188886", "", "", ""], ["", "Non-tumor", "8.6949825±0.978522", "", "", "", "", "", "", ""], ["EIF4EBP1", "Tumor", "11.427944±1.081142", "<0.0001", "1.046433", "0.666103", "0.505345", "", "", ""], ["", "Non-tumor", "9.8783883±0.927159", "", "", "", "", "", "", ""], ["CX3CL1", "Tumor", "9.7520038±1.782426", "<0.0001", "1.034169", "0.77976", "0.435532", "", "", ""], ["", "Non-tumor", "12.084799±0.955857", "", "", "", "", "", "", ""], ["ITGB4", "Tumor", "14.253622±1.551662", "<0.0001", "0.936675", "−1.33788", "0.180934", "", "", ""], ["", "Non-tumor", "13.188612±1.541228", "", "", "", "", "", "", ""]], "row_count": 56, "column_count": 10, "numeric_cells": 176, "header_rows": 2, "locator": "section[10]/table-wrap[1]#T0002"}}, {"id": "asset:table:pmid:31190871:3", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:8455598ce6b03c89b05ae2856fd379ace37272ce14d02e4cbd6e5e3718499832", "bytes": 2514, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[10]/table-wrap[2]#T0003", "version": null, "note": "Relationships between three key prognostic genes expression and clinical parameters in bladder cancer by TCGA", "structure": {"pmcid": "PMC6526186", "section_index": 10, "section_title": "Identification of prognostic ARGs", "row_count": 22, "column_count": 12}, "table": {"label": "Table 3", "caption": "Relationships between three key prognostic genes expression and clinical parameters in bladder cancer by TCGA", "rows": [["Parameters", "N", "JUN expression value", "MYC expression value", "ITGA3 expression value"], ["M±SD", "t value", "P-value", "M±SD", "t value", "P-value", "M±SD", "t value", "P-value"], ["Tissues", "Tumor", "414", "13.0028±1.1640", "−7.410", "<0.001", "11.5414±1.5545", "−4.822", "<0.001", "13.8221±1.5157", "2.405", "0.017"], ["Non-tumor", "19", "15.0279±1.1851", "13.2877±1.2655", "12.9754±1.0911"], ["Age", "≥60", "321", "13.0359±1.1327", "1.076", "0.150", "11.6119±1.5304", "1.571", "0.117", "13.7787±1.5272", "−1.665", "0.097"], ["<60", "87", "12.8852±1.2530", "11.3177±1.6171", "14.0830±1.4561"], ["Gender", "Male", "301", "12.9868±1.1674", "−0.495", "0.621", "11.4625±1.5666", "−1.898", "0.058", "13.7850±1.5661", "−1.311", "0.191"], ["Female", "107", "13.0515±1.1410", "11.7930±1.4901", "14.0084±1.3574"], ["Subtype", "Non-papillary", "271", "13.1979±1.0811", "4.903", "<0.001", "11.7343±1.5708", "3.405", "0.001", "13.7762±1.5897", "−1.492", "0.136"], ["Papillary", "132", "12.6091±1.2284", "11.1787±1.4654", "14.0137±1.2921"], ["Tumor status", "With tumor", "151", "13.0248±1.0119", "0.459", "0.647", "11.6697±1.5948", "1.351", "0.177", "13.7276±1.5787", "1.763", "0.079"], ["Tumor free", "201", "12.9720±1.2459", "11.4571±1.4702", "13.9996±1.4314"], ["Histological grade", "High grade", "384", "13.0359±1.1529", "2.143", "0.033", "11.5759±1.5844", "3.002", "0.005", "13.7990±1.5338", "−6.996", "<0.001"], ["Low grade", "21", "12.4819±1.1653", "11.0637±0.6886", "14.8231±0.5669"], ["Pathologic stage", "Ⅲ~Ⅳ", "274", "13.1826±1.0448", "4.206", "<0.001", "11.6576±1.4617", "1.944", "0.053", "13.7353±1.5386", "−2.136", "0.033"], ["I~II", "132", "12.6367±1.3030", "11.3387±1.7148", "14.0770±1.4496"], ["T stage", "T3–T4", "252", "13.1958±1.0249", "3.064", "0.002", "11.6811±1.4423", "1.643", "0.101", "13.7290±1.5227", "−2.684", "0.008"], ["T1–T2", "123", "12.8322±1.1819", "11.4088±1.6306", "14.1726±1.4599"], ["N stage", "N1–3", "129", "13.1086±0.9329", "1.265", "0.207", "11.4309±1.4607", "−1.517", "0.130", "13.6208±1.4944", "−2.427", "0.016"], ["N0", "237", "12.9643±1.2176", "11.6798±1.5195", "14.0205±1.5112"], ["M stage", "M1", "11", "12.8009±1.0016", "−0.191", "0.849", "11.9098±1.8601", "1.245", "0.215", "13.5755±1.3148", "−0.792", "0.429"], ["M0", "196", "12.8728±1.2223", "11.3199±1.5104", "13.9395±1.4919"]], "row_count": 22, "column_count": 12, "numeric_cells": 143, "header_rows": 2, "locator": "section[10]/table-wrap[2]#T0003"}}, {"id": "asset:table:pmid:31190871:4", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:c2ff2bc776f8eab5d91fa372e4b3e687cf08c78e055b8ea7f2cf95531fabe6bc", "bytes": 842, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[11]/table-wrap[1]#T0004", "version": null, "note": "Univariate and multivariate analyses of OS in bladder cancer patients of TCGA", "structure": {"pmcid": "PMC6526186", "section_index": 11, "section_title": "Construction and definition of the PI", "row_count": 8, "column_count": 5}, "table": {"label": "Table 4", "caption": "Univariate and multivariate analyses of OS in bladder cancer patients of TCGA", "rows": [["Variables", "Univariate analysis", "Multivariate analysis"], ["Hazard ratio (95%CI)", "P-value", "Hazard ratio (95% CI)", "P-value"], ["Age", "1.033 (1.017–1.049)", "<0.001", "1.029 (1.014–1.045)", "<0.001"], ["Gender", "0.872 (0.631–1.203)", "0.404", "0.818 (0.588–1.139)", "0.235"], ["Subtype", "1.458 (1.030–2.065)", "0.033", "1.084 (0.756–1.553)", "0.661"], ["Pathologic stage", "1.707 (1.412–2.065)", "<0.001", "1.617 (1.321–1.978)", "<0.001"], ["Histologic grade", "2.968 (0.734–11.995)", "0.127", "0.931 (0.221–3.918)", "0.922"], ["Prognostic index", "2.717 (1.764–4.184)", "<0.001", "2.355 (1.483–3.739)", "<0.001"]], "row_count": 8, "column_count": 5, "numeric_cells": 26, "header_rows": 2, "locator": "section[11]/table-wrap[1]#T0004"}}], "gaps": ["asset:data:geo:GSE100926 not downloaded", "asset:data:geo:GSE100926 licence not read", "asset:data:geo:GSE13507 not downloaded", "asset:data:geo:GSE13507 licence not read", "asset:data:geo:GSE2109 not downloaded", "asset:data:geo:GSE2109 licence not read", "asset:data:geo:GSE24152 not downloaded", "asset:data:geo:GSE24152 licence not read", "asset:data:geo:GSE30522 not downloaded", "asset:data:geo:GSE30522 licence not read", "asset:data:geo:GSE31189 not downloaded", "asset:data:geo:GSE31189 licence not read", "asset:data:geo:GSE31684 not downloaded", "asset:data:geo:GSE31684 licence not read", "asset:data:geo:GSE37815 not downloaded", "asset:data:geo:GSE37815 licence not read", "asset:data:geo:GSE37817 not downloaded", "asset:data:geo:GSE37817 licence not read", "asset:data:geo:GSE40355 not downloaded", "asset:data:geo:GSE40355 licence not read", "asset:data:geo:GSE52519 not downloaded", "asset:data:geo:GSE52519 licence not read", "asset:data:geo:GSE65635 not downloaded", "asset:data:geo:GSE65635 licence not read", "asset:data:geo:GSE7476 not downloaded", "asset:data:geo:GSE7476 licence not read", "asset:data:geo:GSE76211 not downloaded", "asset:data:geo:GSE76211 licence not read"]}, "analysis": {"state": "complete", "methods": [{"id": "method-1", "family": "survival_analysis", "specific": "cox_proportional_hazards", "label": "Survival analysis", "dsl_operations": ["cox_ph"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["time_to_event_with_censoring"], "evidence": {"score": 1.0, "band": "verbatim", "quote": "The Multivariate Cox proportional hazards regression model was used to construct the PI and ACPI model based on the factor correlated with survival."}}, {"id": "method-2", "family": "diagnostic_evaluation", "specific": "roc", "label": "Diagnostic test evaluation", "dsl_operations": ["confusion_counts", "roc_curve", "sensitivity_specificity", "solve_confusion_matrix", "classification_metrics", "published_precision_envelope"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["reference_standard_and_test"], "evidence": {"score": 0.8, "band": "high", "quote": "ROC curve"}}], "targets": [], "gaps": []}, "capability": {"state": "complete", "requirements": [{"capability_id": "capability:computational_analysis", "label": "Computational analysis platform", "assay_families": ["meta_analysis", "machine_learning", "survival_analysis", "statistical_regression", "pca", "molecular_docking", "network_analysis", "differential_expression", "gwas"], "availability_state": "owned", "tier_unlocked": "R1", "candidate": "Automated Assays Laravel application and simulated adapters"}], "gaps": []}, "readiness": {"state": "complete", "tier": "R1", "blocking_axis": "none", "blocked_on": "nothing:replicable_now", "axes": {"method": {"tier": "R1", "expressible": true, "required_operations": ["cox_ph"], "missing_operations": [], "basis": "The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: cox_proportional_hazards."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R1", "reachable": true, "accessions": ["GSE13507", "GSE31684", "GSE76211", "GSE2109", "GSE7476", "GSE30522", "GSE31189", "GSE37815", "GSE52519", "GSE65635", "GSE37817", "GSE100926", "GSE24152", "GSE19915 (GPL3883 and GPL5186)", "GSE40355"], "resolved_accessions": ["GSE13507", "GSE31684", "GSE76211", "GSE2109", "GSE7476", "GSE30522", "GSE31189", "GSE37815", "GSE52519", "GSE65635", "GSE37817", "GSE100926", "GSE24152", "GSE40355"], "statements": ["The RNA-seq data and clinical information of BC analyzed in this study can be downloaded from The Cancer Genome Atlas (TCGA). The microarray data of GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE19915 (GPL3883 and GPL5186), and GSE40355 can be acquired from the Gene Expression Omnibus (GEO) database."], "basis": "The paper names GSE13507, GSE31684, GSE76211, GSE2109, GSE7476, GSE30522, GSE31189, GSE37815, GSE52519, GSE65635, GSE37817, GSE100926, GSE24152, GSE40355 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. 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