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pmid:31190878

LncRNA MIR210HG promotes proliferation and invasion of non-small cell lung cancer by upregulating methylation of CACNA2D2 promoter via binding to DNMT1.

Xiaowen Kang · Fanwu Kong · Kun Huang · Lu Li · Zhaoguo Li · Xinyan Wang · Wei Zhang · Xiaomei Wu

OncoTargets and therapy · 2019 doi:10.2147/OTT.S189468

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title
LncRNA MIR210HG promotes proliferation and invasion of non-small cell lung cancer by upregulating methylation of CACNA2D2 promoter via binding to DNMT1.
doi
10.2147/OTT.S189468
pmid
31190878
authors array · 8 items
[0]
Xiaowen Kang
[1]
Fanwu Kong
[2]
Kun Huang
[3]
Lu Li
[4]
Zhaoguo Li
[5]
Xinyan Wang
[6]
Wei Zhang
[7]
Xiaomei Wu
journal
OncoTargets and therapy
year
2019
abstract
Background: In recent years, a large number of studies have shown that differentially expressed lncRNAs are capable of promoting the occurrence and development of tumors by regulating cell proliferation and differentiation. However, the biological effects of lncRNAs in non-small cell lung cancer (NSCLC) are still needed to be further investigated. Methods: The differentially expressed lncRNAs in NSCLC tissues in the downloaded profiles from GEO database were analyzed and further verified in 100 pairs of NSCLC samples collected in our hospital. After identification of the target gene MIR210HG, the relationship between MIR210HG expression and clinical data of NSCLC patients was analyzed. Regulatory effects of MIR210HG on proliferation, migration, and invasion of NSCLC cells were detected by CCK-8, colony formation, and transwell assay, respectively. The binding condition of MIR210HG and DNA methyltransferase 1 (DNMT1) was detected by RNA binding protein immunoprecipitation. Subsequently, chromatin immunoprecipitation assay assessed the promoter binding of DNMT1 to CACNA2D2. Rescue experiments were conducted to assess whether CACNA2D2 can reverse the function of MIR210HG. Results: MIR210HG was highly expressed in NSCLC tissues not only in GSE30219 dataset but also in our collected NSCLC tissues. MIR210HG expression was correlated to tumor stage and lymph node metastasis of NSCLC patients. Besides, lower disease-free survival (DFS) and overall survival (OS) were found in NSCLC patients with high-level MIR210HG compared with those with low-level MIR210HG. Regression analysis indicated that MIR210HG was the independent risk factor for DFS and OS of NSCLC patients. In vitro experiments demonstrated that MIR210HG knockdown remarkably inhibited proliferation and migration of NSCLC cells. MIR210HG could recruit DNMT1, thereafter promoting methylation of CACNA2D2 promoter region. CACNA2D2 overexpression remarkably inhibited cell proliferation. Moreover, inhibited proliferation induced by MIR210HG knockdown was reversed by CACNA2D2 knockdown. Conclusion: MIR210HG can promote the tumorigenesis of NSCLC by inhibiting the expression of CACNA2D2. Our findings provide new therapeutic strategies for the future treatment of NSCLC.
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Analysis of survival data was performed using Kaplan–Meier method and univariate and multivariate regression analyses.
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In the GEO database (http://www.ncbi.nlm.nih.gov/geo/), we screened out the HGUl33 Plus 2.0 microarray containing data of NSCLC tissues and normal lung tissues using lung cancer as the key word. GSE30219 dataset was included and the CEL data files were analyzed by Affy matrix. The limma function was used to analyze the database containing differential genes (differentially expressed genes were selected by adj.p<0.05, log2FC>1, or logFC<-1), and the survival function was used for prognostic analysis.
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In the GEO database (http://www.ncbi.nlm.nih.gov/geo/), we screened out the HGUl33 Plus 2.0 microarray containing data of NSCLC tissues and normal lung tissues using lung cancer as the key word. GSE30219 dataset was included and the CEL data files were analyzed by Affy matrix. The limma function was used to analyze the database containing differential genes (differentially expressed genes were selected by adj.p<0.05, log2FC>1, or logFC<-1), and the survival function was used for prognostic analysis.
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[4]
95% CI
[5]
p-value
[2] array · 1 item
[0]
Univariate and multivariate analysis of disease-free survival in NSCLC patients (n=100)
[3] array · 7 items
[0]
Age
[1]
1.187
[2]
0.612–1.689
[3]
0.644
[4]
[5]
[6]
[4] array · 7 items
[0]
Gender
[1]
0.881
[2]
0.576–1.511
[3]
0.567
[4]
[5]
[6]
[5] array · 7 items
[0]
Smoker
[1]
0.699
[2]
0.465–1.243
[3]
0.216
[4]
[5]
[6]
[6] array · 7 items
[0]
Histological subtype
[1]
0.533
[2]
0.312–0.866
[3]
0.016
[4]
0.566
[5]
0.352–1.032
[6]
0.054
[7] array · 7 items
[0]
Tumor size
[1]
1.923
[2]
1.087–2.876
[3]
0.017
[4]
1.234
[5]
0.878–2.066
[6]
0.265
[8] array · 7 items
[0]
Lymphatic metastasis
[1]
1.988
[2]
1.089–3.007
[3]
0.006
[4]
1.473
[5]
0.946–2.471
[6]
0.107
[9] array · 7 items
[0]
TNM stage (I versus II or IIIa)
[1]
2.601
[2]
1.645–3.167
[3]
0.002
[4]
1.758
[5]
1.216–2.725
[6]
0.002
[10] array · 7 items
[0]
MIR210HG expression
[1]
2.209
[2]
1.196–2.098
[3]
0.002
[4]
3.169
[5]
1.764–5.926
[6]
<0.001
[11] array · 1 item
[0]
Univariate and multivariate analysis of overall survival in NSCLC patients (n=100)
[12] array · 7 items
[0]
Age
[1]
1.098
[2]
0.619–1.814
[3]
0.744
[4]
[5]
[6]
[13] array · 7 items
[0]
Gender
[1]
0.799
[2]
0.473–1.494
[3]
0.575
[4]
[5]
[6]
[14] array · 7 items
[0]
Smoker
[1]
0.703
[2]
0.379–1.195
[3]
0.228
[4]
[5]
[6]
[15] array · 7 items
[0]
Histological subtype
[1]
0.712
[2]
0.376–1.245
[3]
0.164
[4]
[5]
[6]
[16] array · 7 items
[0]
Tumor size
[1]
1.899
[2]
1.075–3.216
[3]
0.013
[4]
1.576
[5]
0.938–3.273
[6]
0.088
[17] array · 7 items
[0]
Lymphatic metastasis
[1]
2.896
[2]
1.516–5.465
[3]
0.002
[4]
1.634
[5]
0.835–3.679
[6]
0.083
[18] array · 7 items
[0]
TNM stage
[1]
3.217
[2]
2.492–5.748
[3]
<0.001
[4]
2.649
[5]
1.547–5.003
[6]
<0.001
[19] array · 7 items
[0]
MIR210HG expression (low versus high)
[1]
5.476
[2]
2.439–9.806
[3]
0.002
[4]
2.642
[5]
1.219–5.268
[6]
0.008
locator
section[18]/table-wrap[1]#T0002
gaps array · 2 items
[0]
asset:data:geo:GSE30219 not downloaded
[1]
asset:data:geo:GSE30219 licence not read
analysis object · 4 fields
state
partial
methods array · 4 items
[0] object · 10 fields
id
method-1
family
group_comparison
specific
student_t_test
label
Group comparison
dsl_operations array · 0 items
missing_operations array · 1 item
[0]
student_t
expressible
false
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
0.8
band
high
quote
Student's t-test
[1] object · 10 fields
id
method-2
family
correlation_analysis
specific
spearman
label
Correlation analysis
dsl_operations array · 1 item
[0]
spearman_rho
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
paired_numeric_columns
evidence object · 3 fields
score
0.8
band
high
quote
Spearman correlation
[2] object · 10 fields
id
method-3
family
contingency_analysis
specific
chi_square
label
Categorical (contingency table) analysis
dsl_operations array · 1 item
[0]
chi_square_test
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
categorical_cross_tabulation
evidence object · 3 fields
score
0.8
band
high
quote
chi-square
[3] object · 10 fields
id
method-4
family
null
specific
null
label
Kaplan–Meier method
dsl_operations array · 0 items
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 0 items
evidence object · 3 fields
score
1
band
verbatim
quote
Analysis of survival data was performed using Kaplan–Meier method and univariate and multivariate regression analyses.
targets array · 0 items
gaps array · 2 items
[0]
method.reader_named_unmapped
[1]
method.student_t
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
false
required_operations array · 0 items
missing_operations array · 1 item
[0]
student_t
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: student_t_test.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 1 item
[0]
GSE30219
resolved_accessions array · 1 item
[0]
GSE30219
statements array · 1 item
[0]
In the GEO database (http://www.ncbi.nlm.nih.gov/geo/), we screened out the HGUl33 Plus 2.0 microarray containing data of NSCLC tissues and normal lung tissues using lung cancer as the key word. GSE30219 dataset was included and the CEL data files were analyzed by Affy matrix. The limma function was used to analyze the database containing differential genes (differentially expressed genes were selected by adj.p<0.05, log2FC>1, or logFC<-1), and the survival function was used for prognostic analysis.
basis
The paper names GSE30219 in GEO database and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 0 items
assets array · 4 items
[0]
source:pmid:31190878
[1]
data:geo:GSE30219
[2]
asset:table:pmid:31190878:1
[3]
asset:table:pmid:31190878:2
steps array · 0 items
must_build object · 5 fields
dsl_operations array · 1 item
[0] object · 3 fields
operation
student_t
priority
null
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE30219
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-10-31T18:15:57Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
null
calls
3
usage object · 3 fields
prompt_tokens
24036
completion_tokens
1243
cached_tokens
784
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:31190878
type
paper
label
pmid:31190878
[1] object · 3 fields
id
source:pmid:31190878
type
manuscript
label
PMID 31190878 full text
[2] object · 3 fields
id
data:geo:GSE30219
type
dataset
label
GEO GSE30219
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:31190878
type
paper
label
pmid:31190878
[1] object · 3 fields
id
source:pmid:31190878
type
manuscript
label
PMID 31190878 full text
[2] object · 3 fields
id
data:geo:GSE30219
type
dataset
label
GEO GSE30219
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-31190878
type
extraction
used array · 1 item
[0]
source:pmid:31190878
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE30219
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE30219
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:31190878
parent_hash
sha256:468254a16bc947c7456f6ebe49589c2fda5d96d4b2d69f5835fb9cc656b26cb8
fork_of
null
gaps array · 9 items
[0]
asset:data:geo:GSE30219 licence not read
[1]
asset:data:geo:GSE30219 not downloaded
[2]
execution.not_run
[3]
method.reader_named_unmapped
[4]
method.student_t
[5]
review.human_critique
[6]
review.independent_reader
[7]
review.machine_critique
[8]
step:run_analysis blocked on method:student_t
assays array · 4 items
[0] object · 11 fields
role
data_generation
definition_id
apoptosis_assay
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.93
evidence array · 1 item
[0]
and invasion of NSCLC cells were detected by CCK-8, colony formation, and transwell assay, resp
order_basis
paper_text_order:908
id
assay:1
[1] object · 11 fields
role
data_generation
definition_id
transfection
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.99
evidence array · 3 items
[0]
vitro experiments demonstrated that MIR210HG knockdown remarkably inhibited proliferation and migra
[1]
inhibited proliferation induced by MIR210HG knockdown was reversed by CACNA2D2 knockdown. Conclusi
[2]
MIR210HG knockdown was reversed by CACNA2D2 knockdown. Conclusion: MIR210HG can promote the tumori
order_basis
paper_text_order:1843
id
assay:2
[2] object · 11 fields
role
data_generation
definition_id
cell_culture
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99e1195c7d6f
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assay_lexicon
99e1195c7d6f
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[0]
H1975) were obtained from ATCC. BEAS-2B were cultured in BEGM medium and other cells were cultured in
[1]
cultured in BEGM medium and other cells were cultured in RPMI-1640 (Roswell Park Memorial Institute-1
[2]
H1975) were obtained from ATCC. BEAS-2B were cultured in BEGM medium and other cells were cultured
[3]
l line (BEAS-2B) and lung cancer cell lines (A549, H1299, and H1975) were obtained from ATCC.
order_basis
paper_text_order:3736
id
assay:3
[3] object · 11 fields
role
analysis
definition_id
group_comparison
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f2132e96ae6c7a4e
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dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
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Student's t-test
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Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:31190878", "kind": "science-record", "revision": 8, "content_hash": "sha256:ee0f9105f1a90f08258cd015c9da90f3780ffd56c5daa0eb437dd7efdc223b55", "created_at": "2026-11-01T15:40:46Z", "updated_at": "2026-11-01T22:00:36Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "LncRNA MIR210HG promotes proliferation and invasion of non-small cell lung cancer by upregulating methylation of CACNA2D2 promoter via binding to DNMT1.", "doi": "10.2147/OTT.S189468", "pmid": "31190878", "authors": ["Xiaowen Kang", "Fanwu Kong", "Kun Huang", "Lu Li", "Zhaoguo Li", "Xinyan Wang", "Wei Zhang", "Xiaomei Wu"], "journal": "OncoTargets and therapy", "year": 2019, "abstract": "Background: In recent years, a large number of studies have shown that differentially expressed lncRNAs are capable of promoting the occurrence and development of tumors by regulating cell proliferation and differentiation. However, the biological effects of lncRNAs in non-small cell lung cancer (NSCLC) are still needed to be further investigated. Methods: The differentially expressed lncRNAs in NSCLC tissues in the downloaded profiles from GEO database were analyzed and further verified in 100 pairs of NSCLC samples collected in our hospital. After identification of the target gene MIR210HG, the relationship between MIR210HG expression and clinical data of NSCLC patients was analyzed. Regulatory effects of MIR210HG on proliferation, migration, and invasion of NSCLC cells were detected by CCK-8, colony formation, and transwell assay, respectively. The binding condition of MIR210HG and DNA methyltransferase 1 (DNMT1) was detected by RNA binding protein immunoprecipitation. Subsequently, chromatin immunoprecipitation assay assessed the promoter binding of DNMT1 to CACNA2D2. Rescue experiments were conducted to assess whether CACNA2D2 can reverse the function of MIR210HG. Results: MIR210HG was highly expressed in NSCLC tissues not only in GSE30219 dataset but also in our collected NSCLC tissues. MIR210HG expression was correlated to tumor stage and lymph node metastasis of NSCLC patients. Besides, lower disease-free survival (DFS) and overall survival (OS) were found in NSCLC patients with high-level MIR210HG compared with those with low-level MIR210HG. Regression analysis indicated that MIR210HG was the independent risk factor for DFS and OS of NSCLC patients. In vitro experiments demonstrated that MIR210HG knockdown remarkably inhibited proliferation and migration of NSCLC cells. MIR210HG could recruit DNMT1, thereafter promoting methylation of CACNA2D2 promoter region. CACNA2D2 overexpression remarkably inhibited cell proliferation. Moreover, inhibited proliferation induced by MIR210HG knockdown was reversed by CACNA2D2 knockdown. Conclusion: MIR210HG can promote the tumorigenesis of NSCLC by inhibiting the expression of CACNA2D2. Our findings provide new therapeutic strategies for the future treatment of NSCLC.", "claims": [{"id": "claim-method", "statement": "Analysis of survival data was performed using Kaplan–Meier method and univariate and multivariate regression analyses.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:31190878", "locator": "sections[16] \"Statistical analysis\" paragraph 2", "quote": "Analysis of survival data was performed using Kaplan–Meier method and univariate and multivariate regression analyses."}], "state": "complete"}, {"id": "claim-data-access", "statement": "In the GEO database (http://www.ncbi.nlm.nih.gov/geo/), we screened out the HGUl33 Plus 2.0 microarray containing data of NSCLC tissues and normal lung tissues using lung cancer as the key word. GSE30219 dataset was included and the CEL data files were analyzed by Affy matrix. 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"column_count": 7}, "table": {"label": "Table 2", "caption": "Univariate and multivariate analysis of survival in NSCLC patients", "rows": [["Variables", "Univariate analysis", "Multivariate analysis"], ["HR", "95% CI", "p-value", "HR", "95% CI", "p-value"], ["Univariate and multivariate analysis of disease-free survival in NSCLC patients (n=100)"], ["Age", "1.187", "0.612–1.689", "0.644", "", "", ""], ["Gender", "0.881", "0.576–1.511", "0.567", "", "", ""], ["Smoker", "0.699", "0.465–1.243", "0.216", "", "", ""], ["Histological subtype", "0.533", "0.312–0.866", "0.016", "0.566", "0.352–1.032", "0.054"], ["Tumor size", "1.923", "1.087–2.876", "0.017", "1.234", "0.878–2.066", "0.265"], ["Lymphatic metastasis", "1.988", "1.089–3.007", "0.006", "1.473", "0.946–2.471", "0.107"], ["TNM stage (I versus II or IIIa)", "2.601", "1.645–3.167", "0.002", "1.758", "1.216–2.725", "0.002"], ["MIR210HG expression", "2.209", "1.196–2.098", "0.002", "3.169", "1.764–5.926", "<0.001"], ["Univariate and 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"specific": "student_t_test", "label": "Group comparison", "dsl_operations": [], "missing_operations": ["student_t"], "expressible": false, "parameters": {}, "data_shapes": ["two_or_more_groups_continuous"], "evidence": {"score": 0.8, "band": "high", "quote": "Student's t-test"}}, {"id": "method-2", "family": "correlation_analysis", "specific": "spearman", "label": "Correlation analysis", "dsl_operations": ["spearman_rho"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["paired_numeric_columns"], "evidence": {"score": 0.8, "band": "high", "quote": "Spearman correlation"}}, {"id": "method-3", "family": "contingency_analysis", "specific": "chi_square", "label": "Categorical (contingency table) analysis", "dsl_operations": ["chi_square_test"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["categorical_cross_tabulation"], "evidence": {"score": 0.8, "band": "high", "quote": "chi-square"}}, {"id": "method-4", "family": 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"nothing:replicable_now", "axes": {"method": {"tier": "R1", "expressible": false, "required_operations": [], "missing_operations": ["student_t"], "basis": "The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: student_t_test."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R1", "reachable": true, "accessions": ["GSE30219"], "resolved_accessions": ["GSE30219"], "statements": ["In the GEO database (http://www.ncbi.nlm.nih.gov/geo/), we screened out the HGUl33 Plus 2.0 microarray containing data of NSCLC tissues and normal lung tissues using lung cancer as the key word. GSE30219 dataset was included and the CEL data files were analyzed by Affy matrix. The limma function was used to analyze the database containing differential genes (differentially expressed genes were selected by adj.p<0.05, log2FC>1, or logFC<-1), and the survival function was used for prognostic analysis."], "basis": "The paper names GSE30219 in GEO database and the accession resolves in the repository. No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": [], "assets": ["source:pmid:31190878", "data:geo:GSE30219", "asset:table:pmid:31190878:1", "asset:table:pmid:31190878:2"], "steps": []}, "must_build": {"dsl_operations": [{"operation": "student_t", "unlocks_papers": null, "priority": null}], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:GSE30219"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-10-31T18:15:57Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": null}, "calls": 3, "usage": {"prompt_tokens": 24036, "completion_tokens": 1243, "cached_tokens": 784}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:31190878", "type": "paper", "label": "pmid:31190878"}, {"id": "source:pmid:31190878", "type": "manuscript", "label": "PMID 31190878 full text"}, {"id": "data:geo:GSE30219", "type": "dataset", "label": "GEO GSE30219"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:31190878", "type": "paper", "label": "pmid:31190878"}, {"id": "source:pmid:31190878", "type": "manuscript", "label": "PMID 31190878 full text"}, {"id": "data:geo:GSE30219", "type": "dataset", "label": "GEO GSE30219"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-31190878", "type": "extraction", "used": ["source:pmid:31190878"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-GSE30219", "type": "accession_resolution", "used": ["data:geo:GSE30219"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:31190878", "parent_hash": "sha256:468254a16bc947c7456f6ebe49589c2fda5d96d4b2d69f5835fb9cc656b26cb8", "fork_of": null, "generation": 7}, "gaps": ["asset:data:geo:GSE30219 licence not read", "asset:data:geo:GSE30219 not downloaded", "execution.not_run", "method.reader_named_unmapped", "method.student_t", "review.human_critique", "review.independent_reader", "review.machine_critique", "step:run_analysis blocked on method:student_t"], "assays": [{"role": "data_generation", "definition_id": "apoptosis_assay", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.93, "evidence": ["and invasion of NSCLC cells were detected by CCK-8, colony formation, and transwell assay, resp"], "order_basis": "paper_text_order:908", "id": "assay:1"}, {"role": "data_generation", "definition_id": "transfection", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["vitro experiments demonstrated that MIR210HG knockdown remarkably inhibited proliferation and migra", "inhibited proliferation induced by MIR210HG knockdown was reversed by CACNA2D2 knockdown. Conclusi", "MIR210HG knockdown was reversed by CACNA2D2 knockdown. Conclusion: MIR210HG can promote the tumori"], "order_basis": "paper_text_order:1843", "id": "assay:2"}, {"role": "data_generation", "definition_id": "cell_culture", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["H1975) were obtained from ATCC. BEAS-2B were cultured in BEGM medium and other cells were cultured in", "cultured in BEGM medium and other cells were cultured in RPMI-1640 (Roswell Park Memorial Institute-1", "H1975) were obtained from ATCC. BEAS-2B were cultured in BEGM medium and other cells were cultured", "l line (BEAS-2B) and lung cancer cell lines (A549, H1299, and H1975) were obtained from ATCC."], "order_basis": "paper_text_order:3736", "id": "assay:3"}, {"role": "analysis", "definition_id": "group_comparison", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 0.8, "evidence": ["Student's t-test"], "order_basis": "consumes_earlier_output", "id": "assay:4"}]}