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pmid:32181300

Dataset of Cavendish banana transcriptome in response to chitosan coating application.

Fenny Martha Dwivany · Husna Nugrahapraja · Eiichiro Fukusaki · Sastia Prama Putri · Cindy Novianti · Septhy Kusuma Radjasa · Tessa Fauziah · Lutfi Dewi Nirmala Sari

Data in brief · 2020 doi:10.1016/j.dib.2020.105337

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Dataset of Cavendish banana transcriptome in response to chitosan coating application.
doi
10.1016/j.dib.2020.105337
pmid
32181300
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[0]
Fenny Martha Dwivany
[1]
Husna Nugrahapraja
[2]
Eiichiro Fukusaki
[3]
Sastia Prama Putri
[4]
Cindy Novianti
[5]
Septhy Kusuma Radjasa
[6]
Tessa Fauziah
[7]
Lutfi Dewi Nirmala Sari
journal
Data in brief
year
2020
abstract
Banana is a climacteric fruit and its ripening process is greatly influenced by presence of ethylene. This physiological climacteric characteristic of banana fruit leads to a fast ripening and a short shelf-life. Application of edible coating such as chitosan aims to prolong fruit shelf life. The knowledge on gene expression will help to understand the fruit ripening process itself and chitosan effect on global gene expression. Global gene expression data of chitosan treated and control of Cavendish banana during fruit ripening were provided. Total RNA was isolated from banana pulp for differential gene expression analysis. The RNA-sequencing generated ranged from 16,155,947 to 23,587,110 total reads, with 75.8%-83.8% of reads were mapped against the genome reference. In total, 33,797-35,944 transcripts were detected. The transcriptomics data discussed in this publication are accessible through NCBI's Gene Expression Omnibus with GEO Series accession number GSE139457. These data provide information to identify candidate genes involved in fruit ripening in response to chitosan coating to design a better banana postharvest management.
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NCBI's Gene Expression Omnibus (GEO) with GEO series accession number GSE139457https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE139457Raw data are available at NCBI's Sequence Read Archive (SRA) database (accession number SRP227182) https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP227182
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Transcriptomics Library Data of Chitosan-coated Cavendish Banana
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Transcriptomics of Cavendish banana pulp from uncoated and chitosan coated conditions
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Bandung, West Java, Indonesia (6°53′28.9″S 107°36′38.3″E)
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Lustriane, F.M. Dwivany, V. Suendo, M. Reza, Effect of chitosan and chitosan nanoparticles on post harvest quality on banana fruits, J Plant Biotechnol 43 (2018) 36–44. https://doi.org/10.5010/JPB.2018.45.1.036 [1]
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Value of the Data•These data provide the first information of global gene expression in response to chitosan coating during banana ripening.•These data are crucial to identify candidate genes involved in fruit ripening in response to chitosan coating.•These data will be useful to design a better management of banana postharvest.
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Output statistics of the transcriptome from day 1 control (1K), day 1 chitosan-coated (1A), day 7 control (7K), and day 7 chitosan-coated (7A) of Musa acuminata (AAA Group) ‘Cavendish’ fruit in each replicate (replicate a, b, and c) of paired-end expreriment.
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Output statistics of the transcriptome from day 1 control (1K), day 1 chitosan-coated (1A), day 7 control (7K), and day 7 chitosan-coated (7A) of Musa acuminata (AAA Group) ‘Cavendish’ fruit in each replicate (replicate a, b, and c) of paired-end expreriment.
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Mapping result and transcripts detection of the transcriptome from day 1 control (1K), day 1 chitosan-coated (1A), day 7 control (7K), and day 7 chitosan-coated (7A) of Musa acuminata (AAA Group) ‘Cavendish’ fruit.
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Mapping result and transcripts detection of the transcriptome from day 1 control (1K), day 1 chitosan-coated (1A), day 7 control (7K), and day 7 chitosan-coated (7A) of Musa acuminata (AAA Group) ‘Cavendish’ fruit.
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This physiological climacteric characteristic of banana fruit leads to a fast ripening and a short shelf-life. Application of edible coating such as chitosan aims to prolong fruit shelf life. The knowledge on gene expression will help to understand the fruit ripening process itself and chitosan effect on global gene expression. Global gene expression data of chitosan treated and control of Cavendish banana during fruit ripening were provided. Total RNA was isolated from banana pulp for differential gene expression analysis. The RNA-sequencing generated ranged from 16,155,947 to 23,587,110 total reads, with 75.8%-83.8% of reads were mapped against the genome reference. In total, 33,797-35,944 transcripts were detected. The transcriptomics data discussed in this publication are accessible through NCBI's Gene Expression Omnibus with GEO Series accession number GSE139457. 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