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pmid:32258155

Identification of Core Prognosis-Related Candidate Genes in Cervical Cancer via Integrated Bioinformatical Analysis.

Jianxia Wei · Yang Wang · Kejian Shi · Ying Wang

BioMed research international · 2020 doi:10.1155/2020/8959210

Paper

complete

Experiment

complete

Data

partial

Analysis

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Execution

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Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
id
pmid:32258155
kind
science-record
content_hash
sha256:e550a2949b2492f198c4e7927b9f38d1f4d581b821da7dca442fefc3f780e955
schema
https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json
created_at
2026-11-01T15:40:59Z
updated_at
2026-11-01T22:01:28Z
generator object · 2 fields
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paper object · 10 fields
state
complete
title
Identification of Core Prognosis-Related Candidate Genes in Cervical Cancer via Integrated Bioinformatical Analysis.
doi
10.1155/2020/8959210
pmid
32258155
authors array · 4 items
[0]
Jianxia Wei
[1]
Yang Wang
[2]
Kejian Shi
[3]
Ying Wang
journal
BioMed research international
year
2020
abstract
PURPOSES: Cervical cancer (CC) is one of the highest frequently occurred malignant gynecological tumors with high rates of morbidity and mortality. Here, we aimed to identify significant genes associated with poor outcome. Materials and methods. Differentially expressed genes (DEGs) between CC tissues and normal cervical tissues were picked out by GEO2R tool and Venn diagram software. Database for Annotation, Visualization and Integrated Discovery (DAVID) was performed to analyze gene ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway. The protein-protein interactions (PPIs) of these DEGs were visualized by Cytoscape with Search Tool for the Retrieval of Interacting Genes (STRING). Afterwards, Kaplan-Meier analysis was applied to analyze the overall survival among these genes. The Gene Expression Profiling Interactive Analysis (GEPIA) was applied for further validation of the expression level of these genes. RESULTS: The mRNA expression profile datasets of GSE63514, GSE27678, and GSE6791 were downloaded from the Gene Expression Omnibus database (GEO). In total, 76 CC tissues and 35 normal tissues were collected in the three profile datasets. There were totally 73 consistently expressed genes in the three datasets, including 65 up-regulated genes and 8 down-regulated genes. Of PPI network analyzed by Molecular Complex Detection (MCODE) plug-in, all 65 up-regulated genes and 4 down-regulated genes were selected. The results of the Kaplan-Meier survival analysis showed that 3 of the 65 up-regulated genes had a significantly worse prognosis, while 3 of the 4 down-regulated genes had a significantly better outcome. For validation in GEPIA, 4 of 6 genes (PLOD2, ANLN, AURKA, and AR) were confirmed to be significantly deregulated in CC tissues compared to normal tissues. CONCLUSION: We have identified three up-regulated (PLOD2, ANLN, and AURKA) and a down-regulated DEGs (AR) with poor prognosis in CC on the basis of integrated bioinformatical methods, which could be regarded as potential therapeutic targets for CC patients.
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DEGs between CC tissues and normal cervical tissues were identified by the use of GEO2R online tools with ∣logFC∣ > 1.5 and adjust P value < 0.05.
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methodological
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null
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sections[4] "2.2. Gene Expression Profile Analysis" paragraph 2
quote
DEGs between CC tissues and normal cervical tissues were identified by the use of GEO2R online tools with ∣logFC∣ > 1.5 and adjust P value < 0.05.
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The data used to support the findings of this study are available from the corresponding author upon reasonable request.
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sections[16] "Data Availability" paragraph 2
quote
The data used to support the findings of this study are available from the corresponding author upon reasonable request.
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the published estimate and its evidence
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Obtain the source data from the named repository
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The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.
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Run the published analysis
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the replicated result and its comparison
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https://doi.org/10.1155/2020/8959210
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[1] object · 15 fields
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data:geo:GSE27678
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27678
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The data used to support the findings of this study are available from the corresponding author upon reasonable request.
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GEO accession URL
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The data used to support the findings of this study are available from the corresponding author upon reasonable request.
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GSM685553
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GSM685559
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GSM685560
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GSM685561
[38]
GSM685562
[39]
GSM685563
[40]
GSM685564
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GSM685566
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GSM685567
[44]
GSM685568
[45]
GSM685569
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[47]
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GSM685572
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GSM685574
[51]
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[52]
GSM685576
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GSM685577
[54]
GSM685578
[55]
GSM685579
[56]
GSM685580
[57]
GSM685581
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GSM685582
[59]
GSM685583
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GSM685584
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GSM685585
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GSM685586
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GSM685587
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GSM685588
[65]
GSM685589
[66]
GSM685590
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GSM685591
[68]
GSM685592
[69]
GSM685593
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GSM685594
[71]
GSM685595
[72]
GSM685596
[73]
GSM685597
[74]
GSM685598
[75]
GSM685599
[76]
GSM685600
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77
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null
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null
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570;571
taxon
Homo sapiens
title
Gene expression analysis in a variety of normal, premalignant and squamous cell carcinomas of the cervix
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2026-11-01T15:39:54Z
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[2] object · 15 fields
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data:geo:GSE63514
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63514
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null
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null
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null
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reader_required
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null
note
The data used to support the findings of this study are available from the corresponding author upon reasonable request.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
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The data used to support the findings of this study are available from the corresponding author upon reasonable request.
access_statement_kind
data_availability_statement
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[0]
GSM1551311
[1]
GSM1551312
[2]
GSM1551313
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[5]
GSM1551316
[6]
GSM1551317
[7]
GSM1551318
[8]
GSM1551319
[9]
GSM1551320
[10]
GSM1551321
[11]
GSM1551322
[12]
GSM1551323
[13]
GSM1551324
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GSM1551326
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GSM1551327
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GSM1551328
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GSM1551329
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GSM1551330
[20]
GSM1551331
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GSM1551332
[22]
GSM1551333
[23]
GSM1551334
[24]
GSM1551335
[25]
GSM1551336
[26]
GSM1551337
[27]
GSM1551338
[28]
GSM1551339
[29]
GSM1551340
[30]
GSM1551341
[31]
GSM1551342
[32]
GSM1551343
[33]
GSM1551344
[34]
GSM1551345
[35]
GSM1551346
[36]
GSM1551347
[37]
GSM1551348
[38]
GSM1551349
[39]
GSM1551350
[40]
GSM1551351
[41]
GSM1551352
[42]
GSM1551353
[43]
GSM1551354
[44]
GSM1551355
[45]
GSM1551356
[46]
GSM1551357
[47]
GSM1551358
[48]
GSM1551359
[49]
GSM1551360
[50]
GSM1551361
[51]
GSM1551362
[52]
GSM1551363
[53]
GSM1551364
[54]
GSM1551365
[55]
GSM1551366
[56]
GSM1551367
[57]
GSM1551368
[58]
GSM1551369
[59]
GSM1551370
[60]
GSM1551371
[61]
GSM1551372
[62]
GSM1551373
[63]
GSM1551374
[64]
GSM1551375
[65]
GSM1551376
[66]
GSM1551377
[67]
GSM1551378
[68]
GSM1551379
[69]
GSM1551380
[70]
GSM1551381
[71]
GSM1551382
[72]
GSM1551383
[73]
GSM1551384
[74]
GSM1551385
[75]
GSM1551386
[76]
GSM1551387
[77]
GSM1551388
[78]
GSM1551389
[79]
GSM1551390
[80]
GSM1551391
[81]
GSM1551392
[82]
GSM1551393
[83]
GSM1551394
[84]
GSM1551395
[85]
GSM1551396
[86]
GSM1551397
[87]
GSM1551398
[88]
GSM1551399
[89]
GSM1551400
[90]
GSM1551401
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GSM1551402
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GSM1551403
[93]
GSM1551404
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GSM1551405
[95]
GSM1551406
[96]
GSM1551407
[97]
GSM1551408
[98]
GSM1551409
[99]
GSM1551410
[100]
GSM1551411
[101]
GSM1551412
[102]
GSM1551413
[103]
GSM1551414
[104]
GSM1551415
[105]
GSM1551416
[106]
GSM1551417
[107]
GSM1551418
[108]
GSM1551419
[109]
GSM1551420
[110]
GSM1551421
[111]
GSM1551422
[112]
GSM1551423
[113]
GSM1551424
[114]
GSM1551425
[115]
GSM1551426
[116]
GSM1551427
[117]
GSM1551428
[118]
GSM1551429
[119]
GSM1551430
[120]
GSM1551431
[121]
GSM1551432
[122]
GSM1551433
[123]
GSM1551434
[124]
GSM1551435
[125]
GSM1551436
[126]
GSM1551437
[127]
GSM1551438
sample_count
128
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Gene expression analysis of cervical cancer progression
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
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[3] object · 15 fields
id
data:geo:GSE64217
role
raw
format
geo-series
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application/vnd.ncbi.geo-series+json
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE64217
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null
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null
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GSE64217
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null
note
The data used to support the findings of this study are available from the corresponding author upon reasonable request.
structure object · 15 fields
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GEO
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GEO accession URL
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The data used to support the findings of this study are available from the corresponding author upon reasonable request.
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[0]
GSM1566485
[1]
GSM1566486
[2]
GSM1566487
[3]
GSM1566488
[4]
GSM1566489
[5]
GSM1566490
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6
group_sizes
null
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null
platform
10558
taxon
Homo sapiens
title
Genome-wide analysis of gene expression in Normal Cervical mucosa, Cervical intraepithelial neoplasia and Cervical squamous cell carcinoma
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
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[4] object · 15 fields
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data:geo:GSE6791
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application/vnd.ncbi.geo-series+json
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6791
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null
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null
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reader_required
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GSE6791
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null
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The data used to support the findings of this study are available from the corresponding author upon reasonable request.
structure object · 15 fields
repository
GEO
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GEO accession URL
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The data used to support the findings of this study are available from the corresponding author upon reasonable request.
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data_availability_statement
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[0]
GSM155645
[1]
GSM155646
[2]
GSM155647
[3]
GSM155648
[4]
GSM155649
[5]
GSM155650
[6]
GSM155651
[7]
GSM155652
[8]
GSM155653
[9]
GSM155654
[10]
GSM155655
[11]
GSM155656
[12]
GSM155657
[13]
GSM155658
[14]
GSM155659
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GSM155660
[16]
GSM155661
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GSM155662
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[19]
GSM155664
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GSM155665
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GSM155666
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GSM155667
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GSM155669
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GSM155670
[26]
GSM155671
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GSM155672
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GSM155673
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GSM155674
[30]
GSM155675
[31]
GSM155676
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GSM155677
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GSM155678
[34]
GSM155679
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GSM155680
[36]
GSM155681
[37]
GSM155682
[38]
GSM155683
[39]
GSM155684
[40]
GSM155685
[41]
GSM155686
[42]
GSM155687
[43]
GSM155688
[44]
GSM155689
[45]
GSM155690
[46]
GSM155691
[47]
GSM155692
[48]
GSM155693
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GSM155694
[50]
GSM155695
[51]
GSM155696
[52]
GSM155697
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GSM155699
[55]
GSM155700
[56]
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[57]
GSM155702
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GSM155703
[59]
GSM155704
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[61]
GSM155706
[62]
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[63]
GSM155708
[64]
GSM155709
[65]
GSM155710
[66]
GSM155711
[67]
GSM155712
[68]
GSM155713
[69]
GSM155714
[70]
GSM155715
[71]
GSM155716
[72]
GSM155717
[73]
GSM155718
[74]
GSM155719
[75]
GSM155720
[76]
GSM155721
[77]
GSM155722
[78]
GSM155723
[79]
GSM155724
[80]
GSM155725
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GSM155726
[82]
GSM155727
[83]
GSM155728
sample_count
84
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Gene Expression Profiles of HPV-Positive and -Negative Head/Neck and Cervical Cancers
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
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gaps array · 8 items
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asset:data:geo:GSE27678 licence not read
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asset:data:geo:GSE63514 not downloaded
[3]
asset:data:geo:GSE63514 licence not read
[4]
asset:data:geo:GSE64217 not downloaded
[5]
asset:data:geo:GSE64217 licence not read
[6]
asset:data:geo:GSE6791 not downloaded
[7]
asset:data:geo:GSE6791 licence not read
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partial
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survival_analysis
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Survival analysis
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[0]
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time_to_event_with_censoring
evidence object · 3 fields
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Kaplan-Meier
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network_analysis
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Network / pathway analysis
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build_graph
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quote
DEGs between CC tissues and normal cervical tissues were identified by the use of GEO2R online tools with ∣logFC∣ > 1.5 and adjust P value < 0.05.
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Automated Assays Laravel application and simulated adapters
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GSE63514
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The data used to support the findings of this study are available from the corresponding author upon reasonable request.
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Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:32258155", "kind": "science-record", "revision": 7, "content_hash": "sha256:e550a2949b2492f198c4e7927b9f38d1f4d581b821da7dca442fefc3f780e955", "created_at": "2026-11-01T15:40:59Z", "updated_at": "2026-11-01T22:01:28Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Identification of Core Prognosis-Related Candidate Genes in Cervical Cancer via Integrated Bioinformatical Analysis.", "doi": "10.1155/2020/8959210", "pmid": "32258155", "authors": ["Jianxia Wei", "Yang Wang", "Kejian Shi", "Ying Wang"], "journal": "BioMed research international", "year": 2020, "abstract": "PURPOSES: Cervical cancer (CC) is one of the highest frequently occurred malignant gynecological tumors with high rates of morbidity and mortality. Here, we aimed to identify significant genes associated with poor outcome. Materials and methods. Differentially expressed genes (DEGs) between CC tissues and normal cervical tissues were picked out by GEO2R tool and Venn diagram software. Database for Annotation, Visualization and Integrated Discovery (DAVID) was performed to analyze gene ontology (GO) and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway. The protein-protein interactions (PPIs) of these DEGs were visualized by Cytoscape with Search Tool for the Retrieval of Interacting Genes (STRING). Afterwards, Kaplan-Meier analysis was applied to analyze the overall survival among these genes. The Gene Expression Profiling Interactive Analysis (GEPIA) was applied for further validation of the expression level of these genes.\nRESULTS: The mRNA expression profile datasets of GSE63514, GSE27678, and GSE6791 were downloaded from the Gene Expression Omnibus database (GEO). In total, 76 CC tissues and 35 normal tissues were collected in the three profile datasets. There were totally 73 consistently expressed genes in the three datasets, including 65 up-regulated genes and 8 down-regulated genes. Of PPI network analyzed by Molecular Complex Detection (MCODE) plug-in, all 65 up-regulated genes and 4 down-regulated genes were selected. The results of the Kaplan-Meier survival analysis showed that 3 of the 65 up-regulated genes had a significantly worse prognosis, while 3 of the 4 down-regulated genes had a significantly better outcome. For validation in GEPIA, 4 of 6 genes (PLOD2, ANLN, AURKA, and AR) were confirmed to be significantly deregulated in CC tissues compared to normal tissues.\nCONCLUSION: We have identified three up-regulated (PLOD2, ANLN, and AURKA) and a down-regulated DEGs (AR) with poor prognosis in CC on the basis of integrated bioinformatical methods, which could be regarded as potential therapeutic targets for CC patients.", "claims": [{"id": "claim-method", "statement": "DEGs between CC tissues and normal cervical tissues were identified by the use of GEO2R online tools with ∣logFC∣ > 1.5 and adjust P value < 0.05.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:32258155", "locator": "sections[4] \"2.2. 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This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE27678"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE27678"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:32258155", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1155/2020/8959210", "sha256": 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