Corpus Engine Towards a reproducible .science file.
← All .science files

pmid:32595698

Analysis of Expression and Its Clinical Significance of the Secreted Phosphoprotein 1 in Lung Adenocarcinoma.

Zixin Guo · Jingyu Huang · Yujin Wang · Xiao-Ping Liu · Wei Li · Jie Yao · Sheng Li · Weidong Hu

Frontiers in genetics · 2020 doi:10.3389/fgene.2020.00547

Paper

complete

Experiment

complete

Data

partial

Analysis

complete

Execution

absent

Execution evidence has not yet been added to this .science file. Explore its methods, data and open questions to plan the next step.
Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
id
pmid:32595698
kind
science-record
content_hash
sha256:ce67fc95a65483ed57bbea6b454faf1fec91047516e5d839a170eccbd84e1c76
schema
https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json
created_at
2026-11-01T15:41:04Z
updated_at
2026-11-01T21:23:25Z
generator object · 2 fields
name
corpus-assay-engine
run_id
reading-sci-2026-11-01
paper object · 10 fields
state
complete
title
Analysis of Expression and Its Clinical Significance of the Secreted Phosphoprotein 1 in Lung Adenocarcinoma.
doi
10.3389/fgene.2020.00547
pmid
32595698
authors array · 8 items
[0]
Zixin Guo
[1]
Jingyu Huang
[2]
Yujin Wang
[3]
Xiao-Ping Liu
[4]
Wei Li
[5]
Jie Yao
[6]
Sheng Li
[7]
Weidong Hu
journal
Frontiers in genetics
year
2020
abstract
OBJECTIVE: To explore the expression of secreted phosphoprotein 1 (SPP1) in lung adenocarcinoma (LUAD), and evaluate its relationship with clinicopathological characteristics and prognosis of LUAD, and analyze the advantages of SPP1 as a potential prognostic marker in LUAD. METHODS: The expression of SPP1 in normal lung tissue and LUAD was analyzed from the Cancer Cell Line Encyclopedia (CCLE), Gene Expression Omnibus (GEO), and Human Protein Atlas (HPA) databases. GSE68465 was used to explore the relationship between the SPP1 expression and clinicopathological characteristics and the prognosis of LUAD patients. The relationship between SPP1 and immune infiltration in LUAD was analyzed by the Tumor Immune Estimation Resource (TIMER) database. Gene enrichment analysis was performed in GSEA. The Cancer Genome Atlas (TCGA)-LUAD data was used to verify the results. RESULTS: In the cell line level, non-small cell lung cancer ranked ninth among cancer cell lines based on SPP1 expression. In the messenger RNA (mRNA) and protein levels, SPP1 expression was higher in LUAD tissues than that in normal control. SPP1 expression was related to gender, N stage, histological grade, and progression or relapse. In men, SPP1 expression were higher compared to that in women. The higher the N stage, the higher the SPP1 expression level. As LUAD progresses or relapses, SPP1 expression could increase. In the pathological grade, the SPP1 expression was higher in LUAD samples with moderate differentiation. In addition, the overall 5-year survival rates of the SPP1 high and low expression groups were 50.574 and 59.181% [P = 0.008; hazard ratio (HR) = 0.7057; 95% CI, 0.5467-0.9109], indicating that SPP1 had an impact on overall survival for LUAD patients. The relationship between SPP1 expression and CD4+ T cell, macrophage, neutrophil, and dendritic cell infiltration was weak in LUAD. SPP1 could be considered as an independent prognostic marker in LUAD (P = 0.003; HR = 1.150; 95% CI, 1.048-1.261) by multivariate Cox regression analysis. The results of GSEA indicated that samples with high SPP1 expression were enriched in protein secretion, mTORC1 signaling, angiogenesis, and glycolysis pathway. The analysis results obtained by TCGA-LUAD data were basically consistent with the results obtained by GSE68465. CONCLUSIONS: SPP1 can not only affect the occurrence and development of LUAD but also may be an independent prognostic marker of LUAD. SPP1 is expected to be a new target for molecular targeted therapy.
claims array · 2 items
[0] object · 6 fields
id
claim-method
statement
The clinical relevance of LUAD immune subsets was explored by a multivariable Cox proportional hazards model, and SPP1 could be considered as an independent prognostic marker for LUAD patients (HR = 1.150; 95% CI, 1.048–1.261; P = 0.003; Table 2).
kind
methodological
target
null
evidence array · 1 item
[0] object · 3 fields
asset
source:pmid:32595698
locator
sections[16] "SPP1 Is an Independent Prognostic Marker for LUAD Patients" paragraph 2
quote
The clinical relevance of LUAD immune subsets was explored by a multivariable Cox proportional hazards model, and SPP1 could be considered as an independent prognostic marker for LUAD patients (HR = 1.150; 95% CI, 1.048–1.261; P = 0.003; Table 2).
state
complete
[1] object · 6 fields
id
claim-data-access
statement
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
kind
methodological
target
null
evidence array · 1 item
[0] object · 3 fields
asset
source:pmid:32595698
locator
sections[21] "Data Availability Statement" paragraph 2
quote
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
state
complete
gaps array · 0 items
experiment object · 8 fields
state
complete
objective
null
steps array · 3 items
[0] object · 13 fields
id
read_published_estimate
order
1
name
Read the published estimate from the source
kind
other
state
complete
blocked_on
null
description
The claim, method and evidence span published with the source article.
parameters object · 0 fields
inputs array · 1 item
[0]
source:pmid:32595698
outputs array · 1 item
[0]
the published estimate and its evidence
instruments array · 0 items
reagents array · 0 items
[1] object · 13 fields
id
obtain_source_data
order
2
name
Obtain the source data from the named repository
kind
data-preparation
state
complete
blocked_on
null
description
The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.
parameters object · 0 fields
inputs array · 1 item
[0]
data:geo:GSE10072
outputs array · 1 item
[0]
the source data with its repository provenance
instruments array · 0 items
reagents array · 0 items
[2] object · 13 fields
id
run_analysis
order
3
name
Run the published analysis
kind
analysis
state
complete
blocked_on
null
description
Apply the paper's statistical method to the resolved series and compare the result with the published target.
parameters object · 0 fields
inputs array · 1 item
[0]
data:geo:GSE10072
outputs array · 1 item
[0]
the replicated result and its comparison
instruments array · 0 items
reagents array · 0 items
materials array · 0 items
instruments array · 0 items
reagents array · 0 items
conditions object · 0 fields
gaps array · 0 items
data object · 3 fields
state
partial
assets array · 13 items
[0] object · 15 fields
id
source:pmid:32595698
role
manuscript
format
xml
media_type
application/xml
uri
https://doi.org/10.3389/fgene.2020.00547
sha256
sha256:805ecb5bbd58205a8b03ee35e951e8e34c471a9574e47fcfcbada3b89ad47c32
bytes
29805
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
10.3389/fgene.2020.00547
version
null
note
Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.
structure object · 4 fields
pmcid
PMC7303289
source
europe_pmc_fulltext
coverage
whole_body_without_references
text_hash_scope
rendered_section_body
[1] object · 15 fields
id
data:geo:GSE10072
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10072
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE10072
version
null
note
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
access_statement_kind
data_availability_statement
sample_accessions array · 107 items
[0]
GSM254625
[1]
GSM254626
[2]
GSM254627
[3]
GSM254628
[4]
GSM254629
[5]
GSM254630
[6]
GSM254631
[7]
GSM254632
[8]
GSM254633
[9]
GSM254634
[10]
GSM254635
[11]
GSM254636
[12]
GSM254637
[13]
GSM254638
[14]
GSM254639
[15]
GSM254640
[16]
GSM254641
[17]
GSM254642
[18]
GSM254643
[19]
GSM254644
[20]
GSM254645
[21]
GSM254646
[22]
GSM254647
[23]
GSM254648
[24]
GSM254649
[25]
GSM254650
[26]
GSM254651
[27]
GSM254652
[28]
GSM254653
[29]
GSM254654
[30]
GSM254655
[31]
GSM254656
[32]
GSM254657
[33]
GSM254658
[34]
GSM254659
[35]
GSM254660
[36]
GSM254661
[37]
GSM254662
[38]
GSM254663
[39]
GSM254664
[40]
GSM254665
[41]
GSM254666
[42]
GSM254667
[43]
GSM254668
[44]
GSM254669
[45]
GSM254670
[46]
GSM254671
[47]
GSM254672
[48]
GSM254673
[49]
GSM254674
[50]
GSM254675
[51]
GSM254676
[52]
GSM254677
[53]
GSM254678
[54]
GSM254679
[55]
GSM254680
[56]
GSM254681
[57]
GSM254682
[58]
GSM254683
[59]
GSM254684
[60]
GSM254685
[61]
GSM254686
[62]
GSM254687
[63]
GSM254688
[64]
GSM254689
[65]
GSM254690
[66]
GSM254691
[67]
GSM254692
[68]
GSM254693
[69]
GSM254694
[70]
GSM254695
[71]
GSM254696
[72]
GSM254697
[73]
GSM254698
[74]
GSM254699
[75]
GSM254700
[76]
GSM254701
[77]
GSM254702
[78]
GSM254703
[79]
GSM254704
[80]
GSM254705
[81]
GSM254706
[82]
GSM254707
[83]
GSM254708
[84]
GSM254709
[85]
GSM254710
[86]
GSM254711
[87]
GSM254712
[88]
GSM254713
[89]
GSM254714
[90]
GSM254715
[91]
GSM254716
[92]
GSM254717
[93]
GSM254718
[94]
GSM254719
[95]
GSM254720
[96]
GSM254721
[97]
GSM254722
[98]
GSM254723
[99]
GSM254724
[100]
GSM254725
[101]
GSM254726
[102]
GSM254727
[103]
GSM254728
[104]
GSM254729
[105]
GSM254730
[106]
GSM254731
sample_count
107
group_sizes
null
group_sizes_basis
null
platform
96
taxon
Homo sapiens
title
Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival
resolution_checked_at
2026-11-01T15:30:21Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[2] object · 15 fields
id
data:geo:GSE19188
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19188
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE19188
version
null
note
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
access_statement_kind
data_availability_statement
sample_accessions array · 156 items
[0]
GSM475656
[1]
GSM475657
[2]
GSM475658
[3]
GSM475659
[4]
GSM475660
[5]
GSM475661
[6]
GSM475662
[7]
GSM475663
[8]
GSM475664
[9]
GSM475665
[10]
GSM475666
[11]
GSM475667
[12]
GSM475668
[13]
GSM475669
[14]
GSM475670
[15]
GSM475671
[16]
GSM475672
[17]
GSM475673
[18]
GSM475674
[19]
GSM475675
[20]
GSM475676
[21]
GSM475677
[22]
GSM475678
[23]
GSM475679
[24]
GSM475680
[25]
GSM475681
[26]
GSM475682
[27]
GSM475683
[28]
GSM475684
[29]
GSM475685
[30]
GSM475686
[31]
GSM475687
[32]
GSM475688
[33]
GSM475689
[34]
GSM475690
[35]
GSM475691
[36]
GSM475692
[37]
GSM475693
[38]
GSM475694
[39]
GSM475695
[40]
GSM475696
[41]
GSM475697
[42]
GSM475698
[43]
GSM475699
[44]
GSM475700
[45]
GSM475701
[46]
GSM475702
[47]
GSM475703
[48]
GSM475704
[49]
GSM475705
[50]
GSM475706
[51]
GSM475707
[52]
GSM475708
[53]
GSM475709
[54]
GSM475710
[55]
GSM475711
[56]
GSM475712
[57]
GSM475713
[58]
GSM475714
[59]
GSM475715
[60]
GSM475716
[61]
GSM475717
[62]
GSM475718
[63]
GSM475719
[64]
GSM475720
[65]
GSM475721
[66]
GSM475722
[67]
GSM475723
[68]
GSM475724
[69]
GSM475725
[70]
GSM475726
[71]
GSM475727
[72]
GSM475728
[73]
GSM475729
[74]
GSM475730
[75]
GSM475731
[76]
GSM475732
[77]
GSM475733
[78]
GSM475734
[79]
GSM475735
[80]
GSM475736
[81]
GSM475737
[82]
GSM475738
[83]
GSM475739
[84]
GSM475740
[85]
GSM475741
[86]
GSM475742
[87]
GSM475743
[88]
GSM475744
[89]
GSM475745
[90]
GSM475746
[91]
GSM475747
[92]
GSM475748
[93]
GSM475749
[94]
GSM475750
[95]
GSM475751
[96]
GSM475752
[97]
GSM475753
[98]
GSM475754
[99]
GSM475755
[100]
GSM475756
[101]
GSM475757
[102]
GSM475758
[103]
GSM475759
[104]
GSM475760
[105]
GSM475761
[106]
GSM475762
[107]
GSM475763
[108]
GSM475764
[109]
GSM475765
[110]
GSM475766
[111]
GSM475767
[112]
GSM475768
[113]
GSM475769
[114]
GSM475770
[115]
GSM475771
[116]
GSM475772
[117]
GSM475773
[118]
GSM475774
[119]
GSM475775
[120]
GSM475776
[121]
GSM475777
[122]
GSM475778
[123]
GSM475779
[124]
GSM475780
[125]
GSM475781
[126]
GSM475782
[127]
GSM475783
[128]
GSM475784
[129]
GSM475785
[130]
GSM475786
[131]
GSM475787
[132]
GSM475788
[133]
GSM475789
[134]
GSM475790
[135]
GSM475791
[136]
GSM475792
[137]
GSM475793
[138]
GSM475794
[139]
GSM475795
[140]
GSM475796
[141]
GSM475797
[142]
GSM475798
[143]
GSM475799
[144]
GSM475800
[145]
GSM475801
[146]
GSM475802
[147]
GSM475803
[148]
GSM475804
[149]
GSM475805
[150]
GSM475806
[151]
GSM475807
[152]
GSM475808
[153]
GSM475809
[154]
GSM475810
[155]
GSM475811
sample_count
156
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Expression data for early stage NSCLC
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[3] object · 15 fields
id
data:geo:GSE2514
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2514
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE2514
version
null
note
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
access_statement_kind
data_availability_statement
sample_accessions array · 83 items
[0]
GSM36757
[1]
GSM36758
[2]
GSM36759
[3]
GSM36760
[4]
GSM36761
[5]
GSM36762
[6]
GSM36763
[7]
GSM36764
[8]
GSM36765
[9]
GSM36766
[10]
GSM36767
[11]
GSM36768
[12]
GSM36769
[13]
GSM36770
[14]
GSM36771
[15]
GSM36772
[16]
GSM36773
[17]
GSM36774
[18]
GSM36775
[19]
GSM36776
[20]
GSM47958
[21]
GSM47959
[22]
GSM47960
[23]
GSM47961
[24]
GSM47962
[25]
GSM47963
[26]
GSM47964
[27]
GSM47965
[28]
GSM47966
[29]
GSM47967
[30]
GSM47968
[31]
GSM47969
[32]
GSM47970
[33]
GSM47971
[34]
GSM47972
[35]
GSM47973
[36]
GSM47974
[37]
GSM47975
[38]
GSM47976
[39]
GSM47977
[40]
GSM47978
[41]
GSM47979
[42]
GSM47980
[43]
GSM47981
[44]
GSM47982
[45]
GSM47983
[46]
GSM47984
[47]
GSM47985
[48]
GSM47986
[49]
GSM47987
[50]
GSM47988
[51]
GSM47989
[52]
GSM47990
[53]
GSM47991
[54]
GSM47992
[55]
GSM47993
[56]
GSM47994
[57]
GSM47995
[58]
GSM47996
[59]
GSM47997
[60]
GSM47998
[61]
GSM47999
[62]
GSM48000
[63]
GSM48001
[64]
GSM48002
[65]
GSM48003
[66]
GSM48004
[67]
GSM48005
[68]
GSM48006
[69]
GSM48007
[70]
GSM48008
[71]
GSM48009
[72]
GSM48010
[73]
GSM48011
[74]
GSM48012
[75]
GSM48013
[76]
GSM48014
[77]
GSM48015
[78]
GSM48016
[79]
GSM48017
[80]
GSM48018
[81]
GSM48019
[82]
GSM48020
sample_count
83
group_sizes
null
group_sizes_basis
null
platform
81;8300
taxon
Homo sapiens; Mus musculus
title
Lung tumors
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[4] object · 15 fields
id
data:geo:GSE31210
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE31210
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE31210
version
null
note
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
access_statement_kind
data_availability_statement
sample_accessions array · 246 items
[0]
GSM773540
[1]
GSM773541
[2]
GSM773542
[3]
GSM773543
[4]
GSM773544
[5]
GSM773545
[6]
GSM773546
[7]
GSM773547
[8]
GSM773548
[9]
GSM773549
[10]
GSM773550
[11]
GSM773551
[12]
GSM773552
[13]
GSM773553
[14]
GSM773554
[15]
GSM773555
[16]
GSM773556
[17]
GSM773557
[18]
GSM773558
[19]
GSM773559
[20]
GSM773560
[21]
GSM773561
[22]
GSM773562
[23]
GSM773563
[24]
GSM773564
[25]
GSM773565
[26]
GSM773566
[27]
GSM773567
[28]
GSM773568
[29]
GSM773569
[30]
GSM773570
[31]
GSM773571
[32]
GSM773572
[33]
GSM773573
[34]
GSM773574
[35]
GSM773575
[36]
GSM773576
[37]
GSM773577
[38]
GSM773578
[39]
GSM773579
[40]
GSM773580
[41]
GSM773581
[42]
GSM773582
[43]
GSM773583
[44]
GSM773584
[45]
GSM773585
[46]
GSM773586
[47]
GSM773587
[48]
GSM773588
[49]
GSM773589
[50]
GSM773590
[51]
GSM773591
[52]
GSM773592
[53]
GSM773593
[54]
GSM773594
[55]
GSM773595
[56]
GSM773596
[57]
GSM773597
[58]
GSM773598
[59]
GSM773599
[60]
GSM773600
[61]
GSM773601
[62]
GSM773602
[63]
GSM773603
[64]
GSM773604
[65]
GSM773605
[66]
GSM773606
[67]
GSM773607
[68]
GSM773608
[69]
GSM773609
[70]
GSM773610
[71]
GSM773611
[72]
GSM773612
[73]
GSM773613
[74]
GSM773614
[75]
GSM773615
[76]
GSM773616
[77]
GSM773617
[78]
GSM773618
[79]
GSM773619
[80]
GSM773620
[81]
GSM773621
[82]
GSM773622
[83]
GSM773623
[84]
GSM773624
[85]
GSM773625
[86]
GSM773626
[87]
GSM773627
[88]
GSM773628
[89]
GSM773629
[90]
GSM773630
[91]
GSM773631
[92]
GSM773632
[93]
GSM773633
[94]
GSM773634
[95]
GSM773635
[96]
GSM773636
[97]
GSM773637
[98]
GSM773638
[99]
GSM773639
[100]
GSM773640
[101]
GSM773641
[102]
GSM773642
[103]
GSM773643
[104]
GSM773644
[105]
GSM773645
[106]
GSM773646
[107]
GSM773647
[108]
GSM773648
[109]
GSM773649
[110]
GSM773650
[111]
GSM773651
[112]
GSM773652
[113]
GSM773653
[114]
GSM773654
[115]
GSM773655
[116]
GSM773656
[117]
GSM773657
[118]
GSM773658
[119]
GSM773659
[120]
GSM773660
[121]
GSM773661
[122]
GSM773662
[123]
GSM773663
[124]
GSM773664
[125]
GSM773665
[126]
GSM773666
[127]
GSM773667
[128]
GSM773668
[129]
GSM773669
[130]
GSM773670
[131]
GSM773671
[132]
GSM773672
[133]
GSM773673
[134]
GSM773674
[135]
GSM773675
[136]
GSM773676
[137]
GSM773677
[138]
GSM773678
[139]
GSM773679
[140]
GSM773680
[141]
GSM773681
[142]
GSM773682
[143]
GSM773683
[144]
GSM773684
[145]
GSM773685
[146]
GSM773686
[147]
GSM773687
[148]
GSM773688
[149]
GSM773689
[150]
GSM773690
[151]
GSM773691
[152]
GSM773692
[153]
GSM773693
[154]
GSM773694
[155]
GSM773695
[156]
GSM773696
[157]
GSM773697
[158]
GSM773698
[159]
GSM773699
[160]
GSM773700
[161]
GSM773701
[162]
GSM773702
[163]
GSM773703
[164]
GSM773704
[165]
GSM773705
[166]
GSM773706
[167]
GSM773707
[168]
GSM773708
[169]
GSM773709
[170]
GSM773710
[171]
GSM773711
[172]
GSM773712
[173]
GSM773713
[174]
GSM773714
[175]
GSM773715
[176]
GSM773716
[177]
GSM773717
[178]
GSM773718
[179]
GSM773719
[180]
GSM773720
[181]
GSM773721
[182]
GSM773722
[183]
GSM773723
[184]
GSM773724
[185]
GSM773725
[186]
GSM773726
[187]
GSM773727
[188]
GSM773728
[189]
GSM773729
[190]
GSM773730
[191]
GSM773731
[192]
GSM773732
[193]
GSM773733
[194]
GSM773734
[195]
GSM773735
[196]
GSM773736
[197]
GSM773737
[198]
GSM773738
[199]
GSM773739
[200]
GSM773740
[201]
GSM773741
[202]
GSM773742
[203]
GSM773743
[204]
GSM773744
[205]
GSM773745
[206]
GSM773746
[207]
GSM773747
[208]
GSM773748
[209]
GSM773749
[210]
GSM773750
[211]
GSM773751
[212]
GSM773752
[213]
GSM773753
[214]
GSM773754
[215]
GSM773755
[216]
GSM773756
[217]
GSM773757
[218]
GSM773758
[219]
GSM773759
[220]
GSM773760
[221]
GSM773761
[222]
GSM773762
[223]
GSM773763
[224]
GSM773764
[225]
GSM773765
[226]
GSM773766
[227]
GSM773767
[228]
GSM773768
[229]
GSM773769
[230]
GSM773770
[231]
GSM773771
[232]
GSM773772
[233]
GSM773773
[234]
GSM773774
[235]
GSM773775
[236]
GSM773776
[237]
GSM773777
[238]
GSM773778
[239]
GSM773779
[240]
GSM773780
[241]
GSM773781
[242]
GSM773782
[243]
GSM773783
[244]
GSM773784
[245]
GSM773785
sample_count
246
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Gene expression data for pathological stage I-II lung adenocarcinomas
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[5] object · 15 fields
id
data:geo:GSE32863
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32863
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE32863
version
null
note
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
access_statement_kind
data_availability_statement
sample_accessions array · 116 items
[0]
GSM813411
[1]
GSM813412
[2]
GSM813413
[3]
GSM813414
[4]
GSM813415
[5]
GSM813416
[6]
GSM813417
[7]
GSM813418
[8]
GSM813419
[9]
GSM813420
[10]
GSM813421
[11]
GSM813422
[12]
GSM813423
[13]
GSM813424
[14]
GSM813425
[15]
GSM813426
[16]
GSM813427
[17]
GSM813428
[18]
GSM813429
[19]
GSM813430
[20]
GSM813431
[21]
GSM813432
[22]
GSM813433
[23]
GSM813434
[24]
GSM813435
[25]
GSM813436
[26]
GSM813437
[27]
GSM813438
[28]
GSM813439
[29]
GSM813440
[30]
GSM813441
[31]
GSM813442
[32]
GSM813443
[33]
GSM813444
[34]
GSM813445
[35]
GSM813446
[36]
GSM813447
[37]
GSM813448
[38]
GSM813449
[39]
GSM813450
[40]
GSM813451
[41]
GSM813452
[42]
GSM813453
[43]
GSM813454
[44]
GSM813455
[45]
GSM813456
[46]
GSM813457
[47]
GSM813458
[48]
GSM813459
[49]
GSM813460
[50]
GSM813461
[51]
GSM813462
[52]
GSM813463
[53]
GSM813464
[54]
GSM813465
[55]
GSM813466
[56]
GSM813467
[57]
GSM813468
[58]
GSM813469
[59]
GSM813470
[60]
GSM813471
[61]
GSM813472
[62]
GSM813473
[63]
GSM813474
[64]
GSM813475
[65]
GSM813476
[66]
GSM813477
[67]
GSM813478
[68]
GSM813479
[69]
GSM813480
[70]
GSM813481
[71]
GSM813482
[72]
GSM813483
[73]
GSM813484
[74]
GSM813485
[75]
GSM813486
[76]
GSM813487
[77]
GSM813488
[78]
GSM813489
[79]
GSM813490
[80]
GSM813491
[81]
GSM813492
[82]
GSM813493
[83]
GSM813494
[84]
GSM813495
[85]
GSM813496
[86]
GSM813497
[87]
GSM813498
[88]
GSM813499
[89]
GSM813500
[90]
GSM813501
[91]
GSM813502
[92]
GSM813503
[93]
GSM813504
[94]
GSM813505
[95]
GSM813506
[96]
GSM813507
[97]
GSM813508
[98]
GSM813509
[99]
GSM813510
[100]
GSM813511
[101]
GSM813512
[102]
GSM813513
[103]
GSM813514
[104]
GSM813515
[105]
GSM813516
[106]
GSM813517
[107]
GSM813518
[108]
GSM813519
[109]
GSM813520
[110]
GSM813521
[111]
GSM813522
[112]
GSM813523
[113]
GSM813524
[114]
GSM813525
[115]
GSM813526
sample_count
116
group_sizes
null
group_sizes_basis
null
platform
6884
taxon
Homo sapiens
title
Gene expression analysis of lung adenocarcinoma and matched adjacent non-tumor lung tissue
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[6] object · 15 fields
id
data:geo:GSE68465
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68465
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE68465
version
null
note
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
access_statement_kind
data_availability_statement
sample_accessions array · 462 items
[0]
GSM1672281
[1]
GSM1672282
[2]
GSM1672283
[3]
GSM1672284
[4]
GSM1672285
[5]
GSM1672286
[6]
GSM1672287
[7]
GSM1672288
[8]
GSM1672289
[9]
GSM1672290
[10]
GSM1672291
[11]
GSM1672292
[12]
GSM1672293
[13]
GSM1672294
[14]
GSM1672295
[15]
GSM1672296
[16]
GSM1672297
[17]
GSM1672298
[18]
GSM1672299
[19]
GSM1672300
[20]
GSM1672301
[21]
GSM1672302
[22]
GSM1672303
[23]
GSM1672304
[24]
GSM1672305
[25]
GSM1672306
[26]
GSM1672307
[27]
GSM1672308
[28]
GSM1672309
[29]
GSM1672310
[30]
GSM1672311
[31]
GSM1672312
[32]
GSM1672313
[33]
GSM1672314
[34]
GSM1672315
[35]
GSM1672316
[36]
GSM1672317
[37]
GSM1672318
[38]
GSM1672319
[39]
GSM1672320
[40]
GSM1672321
[41]
GSM1672322
[42]
GSM1672323
[43]
GSM1672324
[44]
GSM1672325
[45]
GSM1672326
[46]
GSM1672327
[47]
GSM1672328
[48]
GSM1672329
[49]
GSM1672330
[50]
GSM1672331
[51]
GSM1672332
[52]
GSM1672333
[53]
GSM1672334
[54]
GSM1672335
[55]
GSM1672336
[56]
GSM1672337
[57]
GSM1672338
[58]
GSM1672339
[59]
GSM1672340
[60]
GSM1672341
[61]
GSM1672342
[62]
GSM1672343
[63]
GSM1672344
[64]
GSM1672345
[65]
GSM1672346
[66]
GSM1672347
[67]
GSM1672348
[68]
GSM1672349
[69]
GSM1672350
[70]
GSM1672351
[71]
GSM1672352
[72]
GSM1672353
[73]
GSM1672354
[74]
GSM1672355
[75]
GSM1672356
[76]
GSM1672357
[77]
GSM1672358
[78]
GSM1672359
[79]
GSM1672360
[80]
GSM1672361
[81]
GSM1672362
[82]
GSM1672363
[83]
GSM1672364
[84]
GSM1672365
[85]
GSM1672366
[86]
GSM1672367
[87]
GSM1672368
[88]
GSM1672369
[89]
GSM1672370
[90]
GSM1672371
[91]
GSM1672372
[92]
GSM1672373
[93]
GSM1672374
[94]
GSM1672375
[95]
GSM1672376
[96]
GSM1672377
[97]
GSM1672378
[98]
GSM1672379
[99]
GSM1672380
[100]
GSM1672381
[101]
GSM1672382
[102]
GSM1672383
[103]
GSM1672384
[104]
GSM1672385
[105]
GSM1672386
[106]
GSM1672387
[107]
GSM1672388
[108]
GSM1672389
[109]
GSM1672390
[110]
GSM1672391
[111]
GSM1672392
[112]
GSM1672393
[113]
GSM1672394
[114]
GSM1672395
[115]
GSM1672396
[116]
GSM1672397
[117]
GSM1672398
[118]
GSM1672399
[119]
GSM1672400
[120]
GSM1672401
[121]
GSM1672402
[122]
GSM1672403
[123]
GSM1672404
[124]
GSM1672405
[125]
GSM1672406
[126]
GSM1672407
[127]
GSM1672408
[128]
GSM1672409
[129]
GSM1672410
[130]
GSM1672411
[131]
GSM1672412
[132]
GSM1672413
[133]
GSM1672414
[134]
GSM1672415
[135]
GSM1672416
[136]
GSM1672417
[137]
GSM1672418
[138]
GSM1672419
[139]
GSM1672420
[140]
GSM1672421
[141]
GSM1672422
[142]
GSM1672423
[143]
GSM1672424
[144]
GSM1672425
[145]
GSM1672426
[146]
GSM1672427
[147]
GSM1672428
[148]
GSM1672429
[149]
GSM1672430
[150]
GSM1672431
[151]
GSM1672432
[152]
GSM1672433
[153]
GSM1672434
[154]
GSM1672435
[155]
GSM1672436
[156]
GSM1672437
[157]
GSM1672438
[158]
GSM1672439
[159]
GSM1672440
[160]
GSM1672441
[161]
GSM1672442
[162]
GSM1672443
[163]
GSM1672444
[164]
GSM1672445
[165]
GSM1672446
[166]
GSM1672447
[167]
GSM1672448
[168]
GSM1672449
[169]
GSM1672450
[170]
GSM1672451
[171]
GSM1672452
[172]
GSM1672453
[173]
GSM1672454
[174]
GSM1672455
[175]
GSM1672456
[176]
GSM1672457
[177]
GSM1672458
[178]
GSM1672459
[179]
GSM1672460
[180]
GSM1672461
[181]
GSM1672462
[182]
GSM1672463
[183]
GSM1672464
[184]
GSM1672465
[185]
GSM1672466
[186]
GSM1672467
[187]
GSM1672468
[188]
GSM1672469
[189]
GSM1672470
[190]
GSM1672471
[191]
GSM1672472
[192]
GSM1672473
[193]
GSM1672474
[194]
GSM1672475
[195]
GSM1672476
[196]
GSM1672477
[197]
GSM1672478
[198]
GSM1672479
[199]
GSM1672480
[200]
GSM1672481
[201]
GSM1672482
[202]
GSM1672483
[203]
GSM1672484
[204]
GSM1672485
[205]
GSM1672486
[206]
GSM1672487
[207]
GSM1672488
[208]
GSM1672489
[209]
GSM1672490
[210]
GSM1672491
[211]
GSM1672492
[212]
GSM1672493
[213]
GSM1672494
[214]
GSM1672495
[215]
GSM1672496
[216]
GSM1672497
[217]
GSM1672498
[218]
GSM1672499
[219]
GSM1672500
[220]
GSM1672501
[221]
GSM1672502
[222]
GSM1672503
[223]
GSM1672504
[224]
GSM1672505
[225]
GSM1672506
[226]
GSM1672507
[227]
GSM1672508
[228]
GSM1672509
[229]
GSM1672510
[230]
GSM1672511
[231]
GSM1672512
[232]
GSM1672513
[233]
GSM1672514
[234]
GSM1672515
[235]
GSM1672516
[236]
GSM1672517
[237]
GSM1672518
[238]
GSM1672519
[239]
GSM1672520
[240]
GSM1672521
[241]
GSM1672522
[242]
GSM1672523
[243]
GSM1672524
[244]
GSM1672525
[245]
GSM1672526
[246]
GSM1672527
[247]
GSM1672528
[248]
GSM1672529
[249]
GSM1672530
[250]
GSM1672531
[251]
GSM1672532
[252]
GSM1672533
[253]
GSM1672534
[254]
GSM1672535
[255]
GSM1672536
[256]
GSM1672537
[257]
GSM1672538
[258]
GSM1672539
[259]
GSM1672540
[260]
GSM1672541
[261]
GSM1672542
[262]
GSM1672543
[263]
GSM1672544
[264]
GSM1672545
[265]
GSM1672546
[266]
GSM1672547
[267]
GSM1672548
[268]
GSM1672549
[269]
GSM1672550
[270]
GSM1672551
[271]
GSM1672552
[272]
GSM1672553
[273]
GSM1672554
[274]
GSM1672555
[275]
GSM1672556
[276]
GSM1672557
[277]
GSM1672558
[278]
GSM1672559
[279]
GSM1672560
[280]
GSM1672561
[281]
GSM1672562
[282]
GSM1672563
[283]
GSM1672564
[284]
GSM1672565
[285]
GSM1672566
[286]
GSM1672567
[287]
GSM1672568
[288]
GSM1672569
[289]
GSM1672570
[290]
GSM1672571
[291]
GSM1672572
[292]
GSM1672573
[293]
GSM1672574
[294]
GSM1672575
[295]
GSM1672576
[296]
GSM1672577
[297]
GSM1672578
[298]
GSM1672579
[299]
GSM1672580
[300]
GSM1672581
[301]
GSM1672582
[302]
GSM1672583
[303]
GSM1672584
[304]
GSM1672585
[305]
GSM1672586
[306]
GSM1672587
[307]
GSM1672588
[308]
GSM1672589
[309]
GSM1672590
[310]
GSM1672591
[311]
GSM1672592
[312]
GSM1672593
[313]
GSM1672594
[314]
GSM1672595
[315]
GSM1672596
[316]
GSM1672597
[317]
GSM1672598
[318]
GSM1672599
[319]
GSM1672600
[320]
GSM1672601
[321]
GSM1672602
[322]
GSM1672603
[323]
GSM1672604
[324]
GSM1672605
[325]
GSM1672606
[326]
GSM1672607
[327]
GSM1672608
[328]
GSM1672609
[329]
GSM1672610
[330]
GSM1672611
[331]
GSM1672612
[332]
GSM1672613
[333]
GSM1672614
[334]
GSM1672615
[335]
GSM1672616
[336]
GSM1672617
[337]
GSM1672618
[338]
GSM1672619
[339]
GSM1672620
[340]
GSM1672621
[341]
GSM1672622
[342]
GSM1672623
[343]
GSM1672624
[344]
GSM1672625
[345]
GSM1672626
[346]
GSM1672627
[347]
GSM1672628
[348]
GSM1672629
[349]
GSM1672630
[350]
GSM1672631
[351]
GSM1672632
[352]
GSM1672633
[353]
GSM1672634
[354]
GSM1672635
[355]
GSM1672636
[356]
GSM1672637
[357]
GSM1672638
[358]
GSM1672639
[359]
GSM1672640
[360]
GSM1672641
[361]
GSM1672642
[362]
GSM1672643
[363]
GSM1672644
[364]
GSM1672645
[365]
GSM1672646
[366]
GSM1672647
[367]
GSM1672648
[368]
GSM1672649
[369]
GSM1672650
[370]
GSM1672651
[371]
GSM1672652
[372]
GSM1672653
[373]
GSM1672654
[374]
GSM1672655
[375]
GSM1672656
[376]
GSM1672657
[377]
GSM1672658
[378]
GSM1672659
[379]
GSM1672660
[380]
GSM1672661
[381]
GSM1672662
[382]
GSM1672663
[383]
GSM1672664
[384]
GSM1672665
[385]
GSM1672666
[386]
GSM1672667
[387]
GSM1672668
[388]
GSM1672669
[389]
GSM1672670
[390]
GSM1672671
[391]
GSM1672672
[392]
GSM1672673
[393]
GSM1672674
[394]
GSM1672675
[395]
GSM1672676
[396]
GSM1672677
[397]
GSM1672678
[398]
GSM1672679
[399]
GSM1672680
[400]
GSM1672681
[401]
GSM1672682
[402]
GSM1672683
[403]
GSM1672684
[404]
GSM1672685
[405]
GSM1672686
[406]
GSM1672687
[407]
GSM1672688
[408]
GSM1672689
[409]
GSM1672690
[410]
GSM1672691
[411]
GSM1672692
[412]
GSM1672693
[413]
GSM1672694
[414]
GSM1672695
[415]
GSM1672696
[416]
GSM1672697
[417]
GSM1672698
[418]
GSM1672699
[419]
GSM1672700
[420]
GSM1672701
[421]
GSM1672702
[422]
GSM1672703
[423]
GSM1672704
[424]
GSM1672705
[425]
GSM1672706
[426]
GSM1672707
[427]
GSM1672708
[428]
GSM1672709
[429]
GSM1672710
[430]
GSM1672711
[431]
GSM1672712
[432]
GSM1672713
[433]
GSM1672714
[434]
GSM1672715
[435]
GSM1672716
[436]
GSM1672717
[437]
GSM1672718
[438]
GSM1672719
[439]
GSM1672720
[440]
GSM1672721
[441]
GSM1672722
[442]
GSM1672723
[443]
GSM1672724
[444]
GSM1672725
[445]
GSM1672726
[446]
GSM1672727
[447]
GSM1672728
[448]
GSM1672729
[449]
GSM1672730
[450]
GSM1672731
[451]
GSM1672732
[452]
GSM1672733
[453]
GSM1672734
[454]
GSM1672735
[455]
GSM1672736
[456]
GSM1672737
[457]
GSM1672738
[458]
GSM1672739
[459]
GSM1672740
[460]
GSM1672741
[461]
GSM1672742
sample_count
462
group_sizes
null
group_sizes_basis
null
platform
96
taxon
Homo sapiens
title
caArray_jacob-00182: Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[7] object · 15 fields
id
data:geo:GSE7670
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7670
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE7670
version
null
note
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
access_statement_kind
data_availability_statement
sample_accessions array · 66 items
[0]
GSM185811
[1]
GSM185812
[2]
GSM185813
[3]
GSM185814
[4]
GSM185815
[5]
GSM185816
[6]
GSM185817
[7]
GSM185818
[8]
GSM185819
[9]
GSM185820
[10]
GSM185821
[11]
GSM185822
[12]
GSM185823
[13]
GSM185824
[14]
GSM185825
[15]
GSM185826
[16]
GSM185827
[17]
GSM185828
[18]
GSM185829
[19]
GSM185830
[20]
GSM185831
[21]
GSM185832
[22]
GSM185833
[23]
GSM185834
[24]
GSM185835
[25]
GSM185836
[26]
GSM185837
[27]
GSM185838
[28]
GSM185839
[29]
GSM185840
[30]
GSM185841
[31]
GSM185842
[32]
GSM185843
[33]
GSM185844
[34]
GSM185845
[35]
GSM185846
[36]
GSM185847
[37]
GSM185848
[38]
GSM185849
[39]
GSM185850
[40]
GSM185851
[41]
GSM185852
[42]
GSM185853
[43]
GSM185854
[44]
GSM185855
[45]
GSM185856
[46]
GSM185857
[47]
GSM185858
[48]
GSM185859
[49]
GSM185860
[50]
GSM185861
[51]
GSM185862
[52]
GSM185863
[53]
GSM185864
[54]
GSM185865
[55]
GSM185866
[56]
GSM185867
[57]
GSM185868
[58]
GSM185869
[59]
GSM185870
[60]
GSM185871
[61]
GSM185872
[62]
GSM185873
[63]
GSM185874
[64]
GSM185875
[65]
GSM185876
sample_count
66
group_sizes
null
group_sizes_basis
null
platform
96
taxon
Homo sapiens
title
Expression data from Lung cancer
resolution_checked_at
2026-11-01T15:14:33Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[8] object · 15 fields
id
data:geo:GSE83227
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE83227
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE83227
version
null
note
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
access_statement_kind
data_availability_statement
sample_accessions array · 254 items
[0]
GSM2196610
[1]
GSM2196611
[2]
GSM2196612
[3]
GSM2196613
[4]
GSM2196614
[5]
GSM2196615
[6]
GSM2196616
[7]
GSM2196617
[8]
GSM2196618
[9]
GSM2196619
[10]
GSM2196620
[11]
GSM2196621
[12]
GSM2196622
[13]
GSM2196623
[14]
GSM2196624
[15]
GSM2196625
[16]
GSM2196626
[17]
GSM2196627
[18]
GSM2196628
[19]
GSM2196629
[20]
GSM2196630
[21]
GSM2196631
[22]
GSM2196632
[23]
GSM2196633
[24]
GSM2196634
[25]
GSM2196635
[26]
GSM2196636
[27]
GSM2196637
[28]
GSM2196638
[29]
GSM2196639
[30]
GSM2196640
[31]
GSM2196641
[32]
GSM2196642
[33]
GSM2196643
[34]
GSM2196644
[35]
GSM2196645
[36]
GSM2196646
[37]
GSM2196647
[38]
GSM2196648
[39]
GSM2196649
[40]
GSM2196650
[41]
GSM2196651
[42]
GSM2196652
[43]
GSM2196653
[44]
GSM2196654
[45]
GSM2196655
[46]
GSM2196656
[47]
GSM2196657
[48]
GSM2196658
[49]
GSM2196659
[50]
GSM2196660
[51]
GSM2196661
[52]
GSM2196662
[53]
GSM2196663
[54]
GSM2196664
[55]
GSM2196665
[56]
GSM2196666
[57]
GSM2196667
[58]
GSM2196668
[59]
GSM2196669
[60]
GSM2196670
[61]
GSM2196671
[62]
GSM2196672
[63]
GSM2196673
[64]
GSM2196674
[65]
GSM2196675
[66]
GSM2196676
[67]
GSM2196677
[68]
GSM2196678
[69]
GSM2196679
[70]
GSM2196680
[71]
GSM2196681
[72]
GSM2196682
[73]
GSM2196683
[74]
GSM2196684
[75]
GSM2196685
[76]
GSM2196686
[77]
GSM2196687
[78]
GSM2196688
[79]
GSM2196689
[80]
GSM2196690
[81]
GSM2196691
[82]
GSM2196692
[83]
GSM2196693
[84]
GSM2196694
[85]
GSM2196695
[86]
GSM2196696
[87]
GSM2196697
[88]
GSM2196698
[89]
GSM2196699
[90]
GSM2196700
[91]
GSM2196701
[92]
GSM2196702
[93]
GSM2196703
[94]
GSM2196704
[95]
GSM2196705
[96]
GSM2196706
[97]
GSM2196707
[98]
GSM2196708
[99]
GSM2196709
[100]
GSM2196710
[101]
GSM2196711
[102]
GSM2196712
[103]
GSM2196713
[104]
GSM2196714
[105]
GSM2196715
[106]
GSM2196716
[107]
GSM2196717
[108]
GSM2196718
[109]
GSM2196719
[110]
GSM2196720
[111]
GSM2196721
[112]
GSM2196722
[113]
GSM2196723
[114]
GSM2196724
[115]
GSM2196725
[116]
GSM2196726
[117]
GSM2196727
[118]
GSM2196728
[119]
GSM2196729
[120]
GSM2196730
[121]
GSM2196731
[122]
GSM2196732
[123]
GSM2196733
[124]
GSM2196734
[125]
GSM2196735
[126]
GSM2196736
[127]
GSM2196737
[128]
GSM2196738
[129]
GSM2196739
[130]
GSM2196740
[131]
GSM2196741
[132]
GSM2196742
[133]
GSM2196743
[134]
GSM2196744
[135]
GSM2196745
[136]
GSM2196746
[137]
GSM2196747
[138]
GSM2196748
[139]
GSM2196749
[140]
GSM2196750
[141]
GSM2196751
[142]
GSM2196752
[143]
GSM2196753
[144]
GSM2196754
[145]
GSM2196755
[146]
GSM2196756
[147]
GSM2196757
[148]
GSM2196758
[149]
GSM2196759
[150]
GSM2196760
[151]
GSM2196761
[152]
GSM2196762
[153]
GSM2196763
[154]
GSM2196764
[155]
GSM2196765
[156]
GSM2196766
[157]
GSM2196767
[158]
GSM2196768
[159]
GSM2196769
[160]
GSM2196770
[161]
GSM2196771
[162]
GSM2196772
[163]
GSM2196773
[164]
GSM2196774
[165]
GSM2196775
[166]
GSM2196776
[167]
GSM2196777
[168]
GSM2196778
[169]
GSM2196779
[170]
GSM2196780
[171]
GSM2196781
[172]
GSM2196782
[173]
GSM2196783
[174]
GSM2196784
[175]
GSM2196785
[176]
GSM2196786
[177]
GSM2196787
[178]
GSM2196788
[179]
GSM2196789
[180]
GSM2196790
[181]
GSM2196791
[182]
GSM2196792
[183]
GSM2196793
[184]
GSM2196794
[185]
GSM2196795
[186]
GSM2196796
[187]
GSM2196797
[188]
GSM2196798
[189]
GSM2196799
[190]
GSM2196800
[191]
GSM2196801
[192]
GSM2196802
[193]
GSM2196803
[194]
GSM2196804
[195]
GSM2196805
[196]
GSM2196806
[197]
GSM2196807
[198]
GSM2196808
[199]
GSM2196809
[200]
GSM2196810
[201]
GSM2196811
[202]
GSM2196812
[203]
GSM2196813
[204]
GSM2196814
[205]
GSM2196815
[206]
GSM2196816
[207]
GSM2196817
[208]
GSM2196818
[209]
GSM2196819
[210]
GSM2196820
[211]
GSM2196821
[212]
GSM2196822
[213]
GSM2196823
[214]
GSM2196824
[215]
GSM2196825
[216]
GSM2196826
[217]
GSM2196827
[218]
GSM2196828
[219]
GSM2196829
[220]
GSM2196830
[221]
GSM2196831
[222]
GSM2196832
[223]
GSM2196833
[224]
GSM2196834
[225]
GSM2196835
[226]
GSM2196836
[227]
GSM2196837
[228]
GSM2196838
[229]
GSM2196839
[230]
GSM2196840
[231]
GSM2196841
[232]
GSM2196842
[233]
GSM2196843
[234]
GSM2196844
[235]
GSM2196845
[236]
GSM2196846
[237]
GSM2196847
[238]
GSM2196848
[239]
GSM2196849
[240]
GSM2196850
[241]
GSM2196851
[242]
GSM2196852
[243]
GSM2196853
[244]
GSM2196854
[245]
GSM2196855
[246]
GSM2196856
[247]
GSM2196857
[248]
GSM2196858
[249]
GSM2196859
[250]
GSM2196860
[251]
GSM2196861
[252]
GSM2196862
[253]
GSM2196863
sample_count
254
group_sizes
null
group_sizes_basis
null
platform
8300
taxon
Homo sapiens
title
caArray_meyer-00191: Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[9] object · 16 fields
id
asset:table:pmid:32595698:1
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:4d145b9bcdf2b26fdd6927bc6ce22bf009326aa3342f2e1d8b71e1a8a941023c
bytes
493
access
open
state
verified
reader
read_table
reader_status
available
identifier
section[17]/table-wrap[1]#T3
version
null
note
Gene set enrichment in SPP1 high-expression phenotype (based on GSE68465).
structure object · 5 fields
pmcid
PMC7303289
section_index
8
section_title
Gene Set Enrichment Analysis
row_count
5
column_count
4
table object · 8 fields
label
TABLE 3
caption
Gene set enrichment in SPP1 high-expression phenotype (based on GSE68465).
rows array · 5 items
[0] array · 4 items
[0]
Gene set name
[1]
Normalized enrichment score
[2]
False discovery Rate q value
[3]
Normalized P value
[1] array · 4 items
[0]
PROTEIN_SECRETION
[1]
0.538
[2]
0.211
[3]
0.010
[2] array · 4 items
[0]
MTORC1_SIGNALING
[1]
0.518
[2]
0.127
[3]
0.006
[3] array · 4 items
[0]
ANGIOGENESIS
[1]
0.566
[2]
0.138
[3]
0.021
[4] array · 4 items
[0]
GLYCOLYSIS
[1]
0.422
[2]
0.202
[3]
0.020
locator
section[17]/table-wrap[1]#T3
[10] object · 16 fields
id
asset:table:pmid:32595698:2
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:3784612abdc5214c68fa20061f78233c7999769eaf530aa3bb4f83f838579c19
bytes
1249
access
open
state
verified
reader
read_table
reader_status
available
identifier
section[14]/table-wrap[1]#T1
version
null
note
Associations between SPP1 expression and clinicopathological factors of patients with LUAD (based on GSE68465).
structure object · 5 fields
pmcid
PMC7303289
section_index
14
section_title
Association Between Clinicopathological Characteristics and SPP1 mRNA Expression
row_count
28
column_count
6
table object · 8 fields
label
TABLE 1
caption
Associations between SPP1 expression and clinicopathological factors of patients with LUAD (based on GSE68465).
rows array · 28 items
[0] array · 5 items
[0]
[1]
Total number
[2]
SPP1
[3]
[4]
[1] array · 5 items
[0]
Parameters
[1]
of patients
[2]
expression
[3]
χ2
[4]
P value
[2] array · 6 items
[0]
[1]
[2]
Low
[3]
High
[4]
[5]
[3] array · 6 items
[0]
Gender
[1]
443
[2]
[3]
[4]
6.340
[5]
0.012
[4] array · 6 items
[0]
Male
[1]
[2]
98
[3]
125
[4]
[5]
[5] array · 6 items
[0]
Female
[1]
[2]
123
[3]
97
[4]
[5]
[6] array · 6 items
[0]
Age
[1]
443
[2]
[3]
[4]
0.435
[5]
0.510
[7] array · 6 items
[0]
<60 years
[1]
[2]
67
[3]
61
[4]
[5]
[8] array · 6 items
[0]
≥60 years
[1]
[2]
154
[3]
161
[4]
[5]
[9] array · 6 items
[0]
T stage
[1]
441
[2]
[3]
[4]
6.468
[5]
0.091
[10] array · 6 items
[0]
T1
[1]
[2]
72
[3]
78
[4]
[5]
[11] array · 6 items
[0]
T2
[1]
[2]
133
[3]
118
[4]
[5]
[12] array · 6 items
[0]
T3
[1]
[2]
14
[3]
14
[4]
[5]
[13] array · 6 items
[0]
T4
[1]
[2]
2
[3]
10
[4]
[5]
[14] array · 6 items
[0]
N stage
[1]
440
[2]
[3]
[4]
13.486
[5]
0.001
[15] array · 6 items
[0]
N0
[1]
[2]
158
[3]
141
[4]
[5]
[16] array · 6 items
[0]
N1
[1]
[2]
48
[3]
40
[4]
[5]
[17] array · 6 items
[0]
N2
[1]
[2]
14
[3]
39
[4]
[5]
[18] array · 6 items
[0]
Progression or relapse
[1]
362
[2]
[3]
[4]
5.485
[5]
0.019
[19] array · 6 items
[0]
Yes
[1]
[2]
96
[3]
109
[4]
[5]
[20] array · 6 items
[0]
No
[1]
[2]
93
[3]
64
[4]
[5]
[21] array · 6 items
[0]
Histological grade
[1]
436
[2]
[3]
[4]
9.195
[5]
0.010
[22] array · 6 items
[0]
Well differentiated
[1]
[2]
40
[3]
20
[4]
[5]
[23] array · 6 items
[0]
Moderate differentiation
[1]
[2]
93
[3]
116
[4]
[5]
[24] array · 6 items
[0]
Poorly differentiated
[1]
[2]
84
[3]
83
[4]
[5]
[25] array · 6 items
[0]
Smoking history
[1]
349
[2]
[3]
[4]
2.357
[5]
0.125
[26] array · 6 items
[0]
Yes
[1]
[2]
170
[3]
130
[4]
[5]
[27] array · 6 items
[0]
No
[1]
[2]
22
[3]
27
[4]
[5]
locator
section[14]/table-wrap[1]#T1
[11] object · 16 fields
id
asset:table:pmid:32595698:3
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:20a3e1f6ec616f511fe4bee03770db3489bcc89fa314251caab4f5fed0234e4a
bytes
970
access
open
state
verified
reader
read_table
reader_status
available
identifier
section[16]/table-wrap[1]#T2
version
null
note
Multivariate Cox proportional hazard regression analyses of the relationship between clinicopathological characteristics and overall survival in LUAD from the Tumor Immune Estimation Resource (TIMER).
structure object · 5 fields
pmcid
PMC7303289
section_index
16
section_title
SPP1 Is an Independent Prognostic Marker for LUAD Patients
row_count
14
column_count
4
table object · 8 fields
label
TABLE 2
caption
Multivariate Cox proportional hazard regression analyses of the relationship between clinicopathological characteristics and overall survival in LUAD from the Tumor Immune Estimation Resource (TIMER).
rows array · 14 items
[0] array · 4 items
[0]
Variables
[1]
HR
[2]
95% CI
[3]
P value
[1] array · 4 items
[0]
Age
[1]
1.017
[2]
1.000–1.035
[3]
0.046
[2] array · 4 items
[0]
Gender (male)
[1]
0.826
[2]
0.591–1.154
[3]
0.262
[3] array · 4 items
[0]
Stage2
[1]
2.350
[2]
1.548–3.567
[3]
0.000
[4] array · 4 items
[0]
Stage3
[1]
2.999
[2]
1.969–4.569
[3]
0.000
[5] array · 4 items
[0]
Stage4
[1]
3.789
[2]
2.068–6.941
[3]
0.000
[6] array · 4 items
[0]
Purity
[1]
1.471
[2]
0.642–3.370
[3]
0.362
[7] array · 4 items
[0]
B_cell
[1]
0.040
[2]
0.003–0.612
[3]
0.021
[8] array · 4 items
[0]
CD8_Tcell
[1]
2.344
[2]
0.341–16.136
[3]
0.387
[9] array · 4 items
[0]
CD4_Tcell
[1]
36.137
[2]
2.255–579.010
[3]
0.011
[10] array · 4 items
[0]
Macrophage
[1]
0.588
[2]
0.035–9.888
[3]
0.712
[11] array · 4 items
[0]
Neutrophil
[1]
0.262
[2]
0.005–13.909
[3]
0.508
[12] array · 4 items
[0]
Dendritic
[1]
0.333
[2]
0.077–1.444
[3]
0.142
[13] array · 4 items
[0]
SPP1
[1]
1.150
[2]
1.048–1.261
[3]
0.003
locator
section[16]/table-wrap[1]#T2
[12] object · 16 fields
id
asset:table:pmid:32595698:4
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:4d145b9bcdf2b26fdd6927bc6ce22bf009326aa3342f2e1d8b71e1a8a941023c
bytes
493
access
open
state
verified
reader
read_table
reader_status
available
identifier
section[17]/table-wrap[1]#T3
version
null
note
Gene set enrichment in SPP1 high-expression phenotype (based on GSE68465).
structure object · 5 fields
pmcid
PMC7303289
section_index
17
section_title
Gene Set Enrichment Analysis
row_count
5
column_count
4
table object · 8 fields
label
TABLE 3
caption
Gene set enrichment in SPP1 high-expression phenotype (based on GSE68465).
rows array · 5 items
[0] array · 4 items
[0]
Gene set name
[1]
Normalized enrichment score
[2]
False discovery Rate q value
[3]
Normalized P value
[1] array · 4 items
[0]
PROTEIN_SECRETION
[1]
0.538
[2]
0.211
[3]
0.010
[2] array · 4 items
[0]
MTORC1_SIGNALING
[1]
0.518
[2]
0.127
[3]
0.006
[3] array · 4 items
[0]
ANGIOGENESIS
[1]
0.566
[2]
0.138
[3]
0.021
[4] array · 4 items
[0]
GLYCOLYSIS
[1]
0.422
[2]
0.202
[3]
0.020
locator
section[17]/table-wrap[1]#T3
gaps array · 16 items
[0]
asset:data:geo:GSE10072 not downloaded
[1]
asset:data:geo:GSE10072 licence not read
[2]
asset:data:geo:GSE19188 not downloaded
[3]
asset:data:geo:GSE19188 licence not read
[4]
asset:data:geo:GSE2514 not downloaded
[5]
asset:data:geo:GSE2514 licence not read
[6]
asset:data:geo:GSE31210 not downloaded
[7]
asset:data:geo:GSE31210 licence not read
[8]
asset:data:geo:GSE32863 not downloaded
[9]
asset:data:geo:GSE32863 licence not read
[10]
asset:data:geo:GSE68465 not downloaded
[11]
asset:data:geo:GSE68465 licence not read
[12]
asset:data:geo:GSE7670 not downloaded
[13]
asset:data:geo:GSE7670 licence not read
[14]
asset:data:geo:GSE83227 not downloaded
[15]
asset:data:geo:GSE83227 licence not read
analysis object · 4 fields
state
complete
methods array · 2 items
[0] object · 10 fields
id
method-1
family
survival_analysis
specific
cox_proportional_hazards
label
Survival analysis
dsl_operations array · 1 item
[0]
cox_ph
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
time_to_event_with_censoring
evidence object · 3 fields
score
1
band
verbatim
quote
The clinical relevance of LUAD immune subsets was explored by a multivariable Cox proportional hazards model, and SPP1 could be considered as an independent prognostic marker for LUAD patients (HR = 1.150; 95% CI, 1.048–1.261; P = 0.003; Table 2).
[1] object · 10 fields
id
method-2
family
contingency_analysis
specific
chi_square
label
Categorical (contingency table) analysis
dsl_operations array · 1 item
[0]
chi_square_test
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
categorical_cross_tabulation
evidence object · 3 fields
score
0.8
band
high
quote
χ2
targets array · 0 items
gaps array · 0 items
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
true
required_operations array · 1 item
[0]
cox_ph
missing_operations array · 0 items
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: cox_proportional_hazards.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 8 items
[0]
GSE2514
[1]
GSE7670
[2]
GSE10072
[3]
GSE19188
[4]
GSE31210
[5]
GSE32863
[6]
GSE83227
[7]
GSE68465
resolved_accessions array · 8 items
[0]
GSE2514
[1]
GSE7670
[2]
GSE10072
[3]
GSE19188
[4]
GSE31210
[5]
GSE32863
[6]
GSE83227
[7]
GSE68465
statements array · 1 item
[0]
All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.
basis
The paper names GSE2514, GSE7670, GSE10072, GSE19188, GSE31210, GSE32863, GSE83227, GSE68465 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 1 item
[0]
cox_ph
assets array · 6 items
[0]
source:pmid:32595698
[1]
data:geo:GSE10072
[2]
asset:table:pmid:32595698:1
[3]
asset:table:pmid:32595698:2
[4]
asset:table:pmid:32595698:3
[5]
asset:table:pmid:32595698:4
steps array · 1 item
[0]
run_analysis
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE10072
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-10-31T18:21:23Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
3
usage object · 3 fields
prompt_tokens
23360
completion_tokens
5411
cached_tokens
784
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:32595698
type
paper
label
pmid:32595698
[1] object · 3 fields
id
source:pmid:32595698
type
manuscript
label
PMID 32595698 full text
[2] object · 3 fields
id
data:geo:GSE10072
type
dataset
label
GEO GSE10072
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:32595698
type
paper
label
pmid:32595698
[1] object · 3 fields
id
source:pmid:32595698
type
manuscript
label
PMID 32595698 full text
[2] object · 3 fields
id
data:geo:GSE10072
type
dataset
label
GEO GSE10072
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-32595698
type
extraction
used array · 1 item
[0]
source:pmid:32595698
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE10072
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE10072
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:32595698
parent_hash
sha256:b9fa3cb2fc58ed32373c81d2c016981e51b809e9e592a59f1c4c2f260e50ccdc
fork_of
null
gaps array · 20 items
[0]
asset:data:geo:GSE10072 licence not read
[1]
asset:data:geo:GSE10072 not downloaded
[2]
asset:data:geo:GSE19188 licence not read
[3]
asset:data:geo:GSE19188 not downloaded
[4]
asset:data:geo:GSE2514 licence not read
[5]
asset:data:geo:GSE2514 not downloaded
[6]
asset:data:geo:GSE31210 licence not read
[7]
asset:data:geo:GSE31210 not downloaded
[8]
asset:data:geo:GSE32863 licence not read
[9]
asset:data:geo:GSE32863 not downloaded
[10]
asset:data:geo:GSE68465 licence not read
[11]
asset:data:geo:GSE68465 not downloaded
[12]
asset:data:geo:GSE7670 licence not read
[13]
asset:data:geo:GSE7670 not downloaded
[14]
asset:data:geo:GSE83227 licence not read
[15]
asset:data:geo:GSE83227 not downloaded
[16]
execution.not_run
[17]
review.human_critique
[18]
review.independent_reader
[19]
review.machine_critique
assays array · 1 item
[0] object · 11 fields
role
analysis
definition_id
survival_analysis
definition_version
f2132e96ae6c7a4e
required_operations array · 1 item
[0]
cox_ph
support_state
supported
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
The clinical relevance of LUAD immune subsets was explored by a multivariable Cox proportional hazards model, and SPP1 could be considered as an independent prognostic marker for LUAD patients (HR = 1.150; 95% CI, 1.048–1.261; P = 0.003; Table 2).
order_basis
analysis_only
id
assay:1
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:32595698", "kind": "science-record", "revision": 6, "content_hash": "sha256:ce67fc95a65483ed57bbea6b454faf1fec91047516e5d839a170eccbd84e1c76", "created_at": "2026-11-01T15:41:04Z", "updated_at": "2026-11-01T21:23:25Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Analysis of Expression and Its Clinical Significance of the Secreted Phosphoprotein 1 in Lung Adenocarcinoma.", "doi": "10.3389/fgene.2020.00547", "pmid": "32595698", "authors": ["Zixin Guo", "Jingyu Huang", "Yujin Wang", "Xiao-Ping Liu", "Wei Li", "Jie Yao", "Sheng Li", "Weidong Hu"], "journal": "Frontiers in genetics", "year": 2020, "abstract": "OBJECTIVE: To explore the expression of secreted phosphoprotein 1 (SPP1) in lung adenocarcinoma (LUAD), and evaluate its relationship with clinicopathological characteristics and prognosis of LUAD, and analyze the advantages of SPP1 as a potential prognostic marker in LUAD.\nMETHODS: The expression of SPP1 in normal lung tissue and LUAD was analyzed from the Cancer Cell Line Encyclopedia (CCLE), Gene Expression Omnibus (GEO), and Human Protein Atlas (HPA) databases. GSE68465 was used to explore the relationship between the SPP1 expression and clinicopathological characteristics and the prognosis of LUAD patients. The relationship between SPP1 and immune infiltration in LUAD was analyzed by the Tumor Immune Estimation Resource (TIMER) database. Gene enrichment analysis was performed in GSEA. The Cancer Genome Atlas (TCGA)-LUAD data was used to verify the results.\nRESULTS: In the cell line level, non-small cell lung cancer ranked ninth among cancer cell lines based on SPP1 expression. In the messenger RNA (mRNA) and protein levels, SPP1 expression was higher in LUAD tissues than that in normal control. SPP1 expression was related to gender, N stage, histological grade, and progression or relapse. In men, SPP1 expression were higher compared to that in women. The higher the N stage, the higher the SPP1 expression level. As LUAD progresses or relapses, SPP1 expression could increase. In the pathological grade, the SPP1 expression was higher in LUAD samples with moderate differentiation. In addition, the overall 5-year survival rates of the SPP1 high and low expression groups were 50.574 and 59.181% [P = 0.008; hazard ratio (HR) = 0.7057; 95% CI, 0.5467-0.9109], indicating that SPP1 had an impact on overall survival for LUAD patients. The relationship between SPP1 expression and CD4+ T cell, macrophage, neutrophil, and dendritic cell infiltration was weak in LUAD. SPP1 could be considered as an independent prognostic marker in LUAD (P = 0.003; HR = 1.150; 95% CI, 1.048-1.261) by multivariate Cox regression analysis. The results of GSEA indicated that samples with high SPP1 expression were enriched in protein secretion, mTORC1 signaling, angiogenesis, and glycolysis pathway. The analysis results obtained by TCGA-LUAD data were basically consistent with the results obtained by GSE68465.\nCONCLUSIONS: SPP1 can not only affect the occurrence and development of LUAD but also may be an independent prognostic marker of LUAD. SPP1 is expected to be a new target for molecular targeted therapy.", "claims": [{"id": "claim-method", "statement": "The clinical relevance of LUAD immune subsets was explored by a multivariable Cox proportional hazards model, and SPP1 could be considered as an independent prognostic marker for LUAD patients (HR = 1.150; 95% CI, 1.048–1.261; P = 0.003; Table 2).", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:32595698", "locator": "sections[16] \"SPP1 Is an Independent Prognostic Marker for LUAD Patients\" paragraph 2", "quote": "The clinical relevance of LUAD immune subsets was explored by a multivariable Cox proportional hazards model, and SPP1 could be considered as an independent prognostic marker for LUAD patients (HR = 1.150; 95% CI, 1.048–1.261; P = 0.003; Table 2)."}], "state": "complete"}, {"id": "claim-data-access", "statement": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:32595698", "locator": "sections[21] \"Data Availability Statement\" paragraph 2", "quote": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": null, "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:32595698"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE10072"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE10072"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:32595698", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.3389/fgene.2020.00547", "sha256": "sha256:805ecb5bbd58205a8b03ee35e951e8e34c471a9574e47fcfcbada3b89ad47c32", "bytes": 29805, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.3389/fgene.2020.00547", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC7303289", "source": "europe_pmc_fulltext", "coverage": "whole_body_without_references", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:GSE10072", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10072", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE10072", "version": null, "note": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM254625", "GSM254626", "GSM254627", "GSM254628", "GSM254629", "GSM254630", "GSM254631", "GSM254632", "GSM254633", "GSM254634", "GSM254635", "GSM254636", "GSM254637", "GSM254638", "GSM254639", "GSM254640", "GSM254641", "GSM254642", "GSM254643", "GSM254644", "GSM254645", "GSM254646", "GSM254647", "GSM254648", "GSM254649", "GSM254650", "GSM254651", "GSM254652", "GSM254653", "GSM254654", "GSM254655", "GSM254656", "GSM254657", "GSM254658", "GSM254659", "GSM254660", "GSM254661", "GSM254662", "GSM254663", "GSM254664", "GSM254665", "GSM254666", "GSM254667", "GSM254668", "GSM254669", "GSM254670", "GSM254671", "GSM254672", "GSM254673", "GSM254674", "GSM254675", "GSM254676", "GSM254677", "GSM254678", "GSM254679", "GSM254680", "GSM254681", "GSM254682", "GSM254683", "GSM254684", "GSM254685", "GSM254686", "GSM254687", "GSM254688", "GSM254689", "GSM254690", "GSM254691", "GSM254692", "GSM254693", "GSM254694", "GSM254695", "GSM254696", "GSM254697", "GSM254698", "GSM254699", "GSM254700", "GSM254701", "GSM254702", "GSM254703", "GSM254704", "GSM254705", "GSM254706", "GSM254707", "GSM254708", "GSM254709", "GSM254710", "GSM254711", "GSM254712", "GSM254713", "GSM254714", "GSM254715", "GSM254716", "GSM254717", "GSM254718", "GSM254719", "GSM254720", "GSM254721", "GSM254722", "GSM254723", "GSM254724", "GSM254725", "GSM254726", "GSM254727", "GSM254728", "GSM254729", "GSM254730", "GSM254731"], "sample_count": 107, "group_sizes": null, "group_sizes_basis": null, "platform": "96", "taxon": "Homo sapiens", "title": "Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival", "resolution_checked_at": "2026-11-01T15:30:21Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE19188", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE19188", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE19188", "version": null, "note": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM475656", "GSM475657", "GSM475658", "GSM475659", "GSM475660", "GSM475661", "GSM475662", "GSM475663", "GSM475664", "GSM475665", "GSM475666", "GSM475667", "GSM475668", "GSM475669", "GSM475670", "GSM475671", "GSM475672", "GSM475673", "GSM475674", "GSM475675", "GSM475676", "GSM475677", "GSM475678", "GSM475679", "GSM475680", "GSM475681", "GSM475682", "GSM475683", "GSM475684", "GSM475685", "GSM475686", "GSM475687", "GSM475688", "GSM475689", "GSM475690", "GSM475691", "GSM475692", "GSM475693", "GSM475694", "GSM475695", "GSM475696", "GSM475697", "GSM475698", "GSM475699", "GSM475700", "GSM475701", "GSM475702", "GSM475703", "GSM475704", "GSM475705", "GSM475706", "GSM475707", "GSM475708", "GSM475709", "GSM475710", "GSM475711", "GSM475712", "GSM475713", "GSM475714", "GSM475715", "GSM475716", "GSM475717", "GSM475718", "GSM475719", "GSM475720", "GSM475721", "GSM475722", "GSM475723", "GSM475724", "GSM475725", "GSM475726", "GSM475727", "GSM475728", "GSM475729", "GSM475730", "GSM475731", "GSM475732", "GSM475733", "GSM475734", "GSM475735", "GSM475736", "GSM475737", "GSM475738", "GSM475739", "GSM475740", "GSM475741", "GSM475742", "GSM475743", "GSM475744", "GSM475745", "GSM475746", "GSM475747", "GSM475748", "GSM475749", "GSM475750", "GSM475751", "GSM475752", "GSM475753", "GSM475754", "GSM475755", "GSM475756", "GSM475757", "GSM475758", "GSM475759", "GSM475760", "GSM475761", "GSM475762", "GSM475763", "GSM475764", "GSM475765", "GSM475766", "GSM475767", "GSM475768", "GSM475769", "GSM475770", "GSM475771", "GSM475772", "GSM475773", "GSM475774", "GSM475775", "GSM475776", "GSM475777", "GSM475778", "GSM475779", "GSM475780", "GSM475781", "GSM475782", "GSM475783", "GSM475784", "GSM475785", "GSM475786", "GSM475787", "GSM475788", "GSM475789", "GSM475790", "GSM475791", "GSM475792", "GSM475793", "GSM475794", "GSM475795", "GSM475796", "GSM475797", "GSM475798", "GSM475799", "GSM475800", "GSM475801", "GSM475802", "GSM475803", "GSM475804", "GSM475805", "GSM475806", "GSM475807", "GSM475808", "GSM475809", "GSM475810", "GSM475811"], "sample_count": 156, "group_sizes": null, "group_sizes_basis": null, "platform": "570", "taxon": "Homo sapiens", "title": "Expression data for early stage NSCLC", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE2514", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2514", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE2514", "version": null, "note": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM36757", "GSM36758", "GSM36759", "GSM36760", "GSM36761", "GSM36762", "GSM36763", "GSM36764", "GSM36765", "GSM36766", "GSM36767", "GSM36768", "GSM36769", "GSM36770", "GSM36771", "GSM36772", "GSM36773", "GSM36774", "GSM36775", "GSM36776", "GSM47958", "GSM47959", "GSM47960", "GSM47961", "GSM47962", "GSM47963", "GSM47964", "GSM47965", "GSM47966", "GSM47967", "GSM47968", "GSM47969", "GSM47970", "GSM47971", "GSM47972", "GSM47973", "GSM47974", "GSM47975", "GSM47976", "GSM47977", "GSM47978", "GSM47979", "GSM47980", "GSM47981", "GSM47982", "GSM47983", "GSM47984", "GSM47985", "GSM47986", "GSM47987", "GSM47988", "GSM47989", "GSM47990", "GSM47991", "GSM47992", "GSM47993", "GSM47994", "GSM47995", "GSM47996", "GSM47997", "GSM47998", "GSM47999", "GSM48000", "GSM48001", "GSM48002", "GSM48003", "GSM48004", "GSM48005", "GSM48006", "GSM48007", "GSM48008", "GSM48009", "GSM48010", "GSM48011", "GSM48012", "GSM48013", "GSM48014", "GSM48015", "GSM48016", "GSM48017", "GSM48018", "GSM48019", "GSM48020"], "sample_count": 83, "group_sizes": null, "group_sizes_basis": null, "platform": "81;8300", "taxon": "Homo sapiens; Mus musculus", "title": "Lung tumors", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE31210", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE31210", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE31210", "version": null, "note": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM773540", "GSM773541", "GSM773542", "GSM773543", "GSM773544", "GSM773545", "GSM773546", "GSM773547", "GSM773548", "GSM773549", "GSM773550", "GSM773551", "GSM773552", "GSM773553", "GSM773554", "GSM773555", "GSM773556", "GSM773557", "GSM773558", "GSM773559", "GSM773560", "GSM773561", "GSM773562", "GSM773563", "GSM773564", "GSM773565", "GSM773566", "GSM773567", "GSM773568", "GSM773569", "GSM773570", "GSM773571", "GSM773572", "GSM773573", "GSM773574", "GSM773575", "GSM773576", "GSM773577", "GSM773578", "GSM773579", "GSM773580", "GSM773581", "GSM773582", "GSM773583", "GSM773584", "GSM773585", "GSM773586", "GSM773587", "GSM773588", "GSM773589", "GSM773590", "GSM773591", "GSM773592", "GSM773593", "GSM773594", "GSM773595", "GSM773596", "GSM773597", "GSM773598", "GSM773599", "GSM773600", "GSM773601", "GSM773602", "GSM773603", "GSM773604", "GSM773605", "GSM773606", "GSM773607", "GSM773608", "GSM773609", "GSM773610", "GSM773611", "GSM773612", "GSM773613", "GSM773614", "GSM773615", "GSM773616", "GSM773617", "GSM773618", "GSM773619", "GSM773620", "GSM773621", "GSM773622", "GSM773623", "GSM773624", "GSM773625", "GSM773626", "GSM773627", "GSM773628", "GSM773629", "GSM773630", "GSM773631", "GSM773632", "GSM773633", "GSM773634", "GSM773635", "GSM773636", "GSM773637", "GSM773638", "GSM773639", "GSM773640", "GSM773641", "GSM773642", "GSM773643", "GSM773644", "GSM773645", "GSM773646", "GSM773647", "GSM773648", "GSM773649", "GSM773650", "GSM773651", "GSM773652", "GSM773653", "GSM773654", "GSM773655", "GSM773656", "GSM773657", "GSM773658", "GSM773659", "GSM773660", "GSM773661", "GSM773662", "GSM773663", "GSM773664", "GSM773665", "GSM773666", "GSM773667", "GSM773668", "GSM773669", "GSM773670", "GSM773671", "GSM773672", "GSM773673", "GSM773674", "GSM773675", "GSM773676", "GSM773677", "GSM773678", "GSM773679", "GSM773680", "GSM773681", "GSM773682", "GSM773683", "GSM773684", "GSM773685", "GSM773686", "GSM773687", "GSM773688", "GSM773689", "GSM773690", "GSM773691", "GSM773692", "GSM773693", "GSM773694", "GSM773695", "GSM773696", "GSM773697", "GSM773698", "GSM773699", "GSM773700", "GSM773701", "GSM773702", "GSM773703", "GSM773704", "GSM773705", "GSM773706", "GSM773707", "GSM773708", "GSM773709", "GSM773710", "GSM773711", "GSM773712", "GSM773713", "GSM773714", "GSM773715", "GSM773716", "GSM773717", "GSM773718", "GSM773719", "GSM773720", "GSM773721", "GSM773722", "GSM773723", "GSM773724", "GSM773725", "GSM773726", "GSM773727", "GSM773728", "GSM773729", "GSM773730", "GSM773731", "GSM773732", "GSM773733", "GSM773734", "GSM773735", "GSM773736", "GSM773737", "GSM773738", "GSM773739", "GSM773740", "GSM773741", "GSM773742", "GSM773743", "GSM773744", "GSM773745", "GSM773746", "GSM773747", "GSM773748", "GSM773749", "GSM773750", "GSM773751", "GSM773752", "GSM773753", "GSM773754", "GSM773755", "GSM773756", "GSM773757", "GSM773758", "GSM773759", "GSM773760", "GSM773761", "GSM773762", "GSM773763", "GSM773764", "GSM773765", "GSM773766", "GSM773767", "GSM773768", "GSM773769", "GSM773770", "GSM773771", "GSM773772", "GSM773773", "GSM773774", "GSM773775", "GSM773776", "GSM773777", "GSM773778", "GSM773779", "GSM773780", "GSM773781", "GSM773782", "GSM773783", "GSM773784", "GSM773785"], "sample_count": 246, "group_sizes": null, "group_sizes_basis": null, "platform": "570", "taxon": "Homo sapiens", "title": "Gene expression data for pathological stage I-II lung adenocarcinomas", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE32863", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32863", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE32863", "version": null, "note": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM813411", "GSM813412", "GSM813413", "GSM813414", "GSM813415", "GSM813416", "GSM813417", "GSM813418", "GSM813419", "GSM813420", "GSM813421", "GSM813422", "GSM813423", "GSM813424", "GSM813425", "GSM813426", "GSM813427", "GSM813428", "GSM813429", "GSM813430", "GSM813431", "GSM813432", "GSM813433", "GSM813434", "GSM813435", "GSM813436", "GSM813437", "GSM813438", "GSM813439", "GSM813440", "GSM813441", "GSM813442", "GSM813443", "GSM813444", "GSM813445", "GSM813446", "GSM813447", "GSM813448", "GSM813449", "GSM813450", "GSM813451", "GSM813452", "GSM813453", "GSM813454", "GSM813455", "GSM813456", "GSM813457", "GSM813458", "GSM813459", "GSM813460", "GSM813461", "GSM813462", "GSM813463", "GSM813464", "GSM813465", "GSM813466", "GSM813467", "GSM813468", "GSM813469", "GSM813470", "GSM813471", "GSM813472", "GSM813473", "GSM813474", "GSM813475", "GSM813476", "GSM813477", "GSM813478", "GSM813479", "GSM813480", "GSM813481", "GSM813482", "GSM813483", "GSM813484", "GSM813485", "GSM813486", "GSM813487", "GSM813488", "GSM813489", "GSM813490", "GSM813491", "GSM813492", "GSM813493", "GSM813494", "GSM813495", "GSM813496", "GSM813497", "GSM813498", "GSM813499", "GSM813500", "GSM813501", "GSM813502", "GSM813503", "GSM813504", "GSM813505", "GSM813506", "GSM813507", "GSM813508", "GSM813509", "GSM813510", "GSM813511", "GSM813512", "GSM813513", "GSM813514", "GSM813515", "GSM813516", "GSM813517", "GSM813518", "GSM813519", "GSM813520", "GSM813521", "GSM813522", "GSM813523", "GSM813524", "GSM813525", "GSM813526"], "sample_count": 116, "group_sizes": null, "group_sizes_basis": null, "platform": "6884", "taxon": "Homo sapiens", "title": "Gene expression analysis of lung adenocarcinoma and matched adjacent non-tumor lung tissue", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE68465", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68465", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE68465", "version": null, "note": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM1672281", "GSM1672282", "GSM1672283", "GSM1672284", "GSM1672285", "GSM1672286", "GSM1672287", "GSM1672288", "GSM1672289", "GSM1672290", "GSM1672291", "GSM1672292", "GSM1672293", "GSM1672294", "GSM1672295", "GSM1672296", "GSM1672297", "GSM1672298", "GSM1672299", "GSM1672300", "GSM1672301", "GSM1672302", "GSM1672303", "GSM1672304", "GSM1672305", "GSM1672306", "GSM1672307", "GSM1672308", "GSM1672309", "GSM1672310", "GSM1672311", "GSM1672312", "GSM1672313", "GSM1672314", "GSM1672315", "GSM1672316", "GSM1672317", "GSM1672318", "GSM1672319", "GSM1672320", "GSM1672321", "GSM1672322", "GSM1672323", "GSM1672324", "GSM1672325", "GSM1672326", "GSM1672327", "GSM1672328", "GSM1672329", "GSM1672330", "GSM1672331", "GSM1672332", "GSM1672333", "GSM1672334", "GSM1672335", "GSM1672336", "GSM1672337", "GSM1672338", "GSM1672339", "GSM1672340", "GSM1672341", "GSM1672342", "GSM1672343", "GSM1672344", "GSM1672345", "GSM1672346", "GSM1672347", "GSM1672348", "GSM1672349", "GSM1672350", "GSM1672351", "GSM1672352", "GSM1672353", "GSM1672354", "GSM1672355", "GSM1672356", "GSM1672357", "GSM1672358", "GSM1672359", "GSM1672360", "GSM1672361", "GSM1672362", "GSM1672363", "GSM1672364", "GSM1672365", "GSM1672366", "GSM1672367", "GSM1672368", "GSM1672369", "GSM1672370", "GSM1672371", "GSM1672372", "GSM1672373", "GSM1672374", "GSM1672375", "GSM1672376", "GSM1672377", "GSM1672378", "GSM1672379", "GSM1672380", "GSM1672381", "GSM1672382", "GSM1672383", "GSM1672384", "GSM1672385", "GSM1672386", "GSM1672387", "GSM1672388", "GSM1672389", "GSM1672390", "GSM1672391", "GSM1672392", "GSM1672393", "GSM1672394", "GSM1672395", "GSM1672396", "GSM1672397", "GSM1672398", "GSM1672399", "GSM1672400", "GSM1672401", "GSM1672402", "GSM1672403", "GSM1672404", "GSM1672405", "GSM1672406", "GSM1672407", "GSM1672408", "GSM1672409", "GSM1672410", "GSM1672411", "GSM1672412", "GSM1672413", "GSM1672414", "GSM1672415", "GSM1672416", "GSM1672417", "GSM1672418", "GSM1672419", "GSM1672420", "GSM1672421", "GSM1672422", "GSM1672423", "GSM1672424", "GSM1672425", "GSM1672426", "GSM1672427", "GSM1672428", "GSM1672429", "GSM1672430", "GSM1672431", "GSM1672432", "GSM1672433", "GSM1672434", "GSM1672435", "GSM1672436", "GSM1672437", "GSM1672438", "GSM1672439", "GSM1672440", "GSM1672441", "GSM1672442", "GSM1672443", "GSM1672444", "GSM1672445", "GSM1672446", "GSM1672447", "GSM1672448", "GSM1672449", "GSM1672450", "GSM1672451", "GSM1672452", "GSM1672453", "GSM1672454", "GSM1672455", "GSM1672456", "GSM1672457", "GSM1672458", "GSM1672459", "GSM1672460", "GSM1672461", "GSM1672462", "GSM1672463", "GSM1672464", "GSM1672465", "GSM1672466", "GSM1672467", "GSM1672468", "GSM1672469", "GSM1672470", "GSM1672471", "GSM1672472", "GSM1672473", "GSM1672474", "GSM1672475", "GSM1672476", "GSM1672477", "GSM1672478", "GSM1672479", "GSM1672480", "GSM1672481", "GSM1672482", "GSM1672483", "GSM1672484", "GSM1672485", "GSM1672486", "GSM1672487", "GSM1672488", "GSM1672489", "GSM1672490", "GSM1672491", "GSM1672492", "GSM1672493", "GSM1672494", "GSM1672495", "GSM1672496", "GSM1672497", "GSM1672498", "GSM1672499", "GSM1672500", "GSM1672501", "GSM1672502", "GSM1672503", "GSM1672504", "GSM1672505", "GSM1672506", "GSM1672507", "GSM1672508", "GSM1672509", "GSM1672510", "GSM1672511", "GSM1672512", "GSM1672513", "GSM1672514", "GSM1672515", "GSM1672516", "GSM1672517", "GSM1672518", "GSM1672519", "GSM1672520", "GSM1672521", "GSM1672522", "GSM1672523", "GSM1672524", "GSM1672525", "GSM1672526", "GSM1672527", "GSM1672528", "GSM1672529", "GSM1672530", "GSM1672531", "GSM1672532", "GSM1672533", "GSM1672534", "GSM1672535", "GSM1672536", "GSM1672537", "GSM1672538", "GSM1672539", "GSM1672540", "GSM1672541", "GSM1672542", "GSM1672543", "GSM1672544", "GSM1672545", "GSM1672546", "GSM1672547", "GSM1672548", "GSM1672549", "GSM1672550", "GSM1672551", "GSM1672552", "GSM1672553", "GSM1672554", "GSM1672555", "GSM1672556", "GSM1672557", "GSM1672558", "GSM1672559", "GSM1672560", "GSM1672561", "GSM1672562", "GSM1672563", "GSM1672564", "GSM1672565", "GSM1672566", "GSM1672567", "GSM1672568", "GSM1672569", "GSM1672570", "GSM1672571", "GSM1672572", "GSM1672573", "GSM1672574", "GSM1672575", "GSM1672576", "GSM1672577", "GSM1672578", "GSM1672579", "GSM1672580", "GSM1672581", "GSM1672582", "GSM1672583", "GSM1672584", "GSM1672585", "GSM1672586", "GSM1672587", "GSM1672588", "GSM1672589", "GSM1672590", "GSM1672591", "GSM1672592", "GSM1672593", "GSM1672594", "GSM1672595", "GSM1672596", "GSM1672597", "GSM1672598", "GSM1672599", "GSM1672600", "GSM1672601", "GSM1672602", "GSM1672603", "GSM1672604", "GSM1672605", "GSM1672606", "GSM1672607", "GSM1672608", "GSM1672609", "GSM1672610", "GSM1672611", "GSM1672612", "GSM1672613", "GSM1672614", "GSM1672615", "GSM1672616", "GSM1672617", "GSM1672618", "GSM1672619", "GSM1672620", "GSM1672621", "GSM1672622", "GSM1672623", "GSM1672624", "GSM1672625", "GSM1672626", "GSM1672627", "GSM1672628", "GSM1672629", "GSM1672630", "GSM1672631", "GSM1672632", "GSM1672633", "GSM1672634", "GSM1672635", "GSM1672636", "GSM1672637", "GSM1672638", "GSM1672639", "GSM1672640", "GSM1672641", "GSM1672642", "GSM1672643", "GSM1672644", "GSM1672645", "GSM1672646", "GSM1672647", "GSM1672648", "GSM1672649", "GSM1672650", "GSM1672651", "GSM1672652", "GSM1672653", "GSM1672654", "GSM1672655", "GSM1672656", "GSM1672657", "GSM1672658", "GSM1672659", "GSM1672660", "GSM1672661", "GSM1672662", "GSM1672663", "GSM1672664", "GSM1672665", "GSM1672666", "GSM1672667", "GSM1672668", "GSM1672669", "GSM1672670", "GSM1672671", "GSM1672672", "GSM1672673", "GSM1672674", "GSM1672675", "GSM1672676", "GSM1672677", "GSM1672678", "GSM1672679", "GSM1672680", "GSM1672681", "GSM1672682", "GSM1672683", "GSM1672684", "GSM1672685", "GSM1672686", "GSM1672687", "GSM1672688", "GSM1672689", "GSM1672690", "GSM1672691", "GSM1672692", "GSM1672693", "GSM1672694", "GSM1672695", "GSM1672696", "GSM1672697", "GSM1672698", "GSM1672699", "GSM1672700", "GSM1672701", "GSM1672702", "GSM1672703", "GSM1672704", "GSM1672705", "GSM1672706", "GSM1672707", "GSM1672708", "GSM1672709", "GSM1672710", "GSM1672711", "GSM1672712", "GSM1672713", "GSM1672714", "GSM1672715", "GSM1672716", "GSM1672717", "GSM1672718", "GSM1672719", "GSM1672720", "GSM1672721", "GSM1672722", "GSM1672723", "GSM1672724", "GSM1672725", "GSM1672726", "GSM1672727", "GSM1672728", "GSM1672729", "GSM1672730", "GSM1672731", "GSM1672732", "GSM1672733", "GSM1672734", "GSM1672735", "GSM1672736", "GSM1672737", "GSM1672738", "GSM1672739", "GSM1672740", "GSM1672741", "GSM1672742"], "sample_count": 462, "group_sizes": null, "group_sizes_basis": null, "platform": "96", "taxon": "Homo sapiens", "title": "caArray_jacob-00182: Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study", "resolution_checked_at": "2026-11-01T15:39:55Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE7670", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE7670", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE7670", "version": null, "note": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM185811", "GSM185812", "GSM185813", "GSM185814", "GSM185815", "GSM185816", "GSM185817", "GSM185818", "GSM185819", "GSM185820", "GSM185821", "GSM185822", "GSM185823", "GSM185824", "GSM185825", "GSM185826", "GSM185827", "GSM185828", "GSM185829", "GSM185830", "GSM185831", "GSM185832", "GSM185833", "GSM185834", "GSM185835", "GSM185836", "GSM185837", "GSM185838", "GSM185839", "GSM185840", "GSM185841", "GSM185842", "GSM185843", "GSM185844", "GSM185845", "GSM185846", "GSM185847", "GSM185848", "GSM185849", "GSM185850", "GSM185851", "GSM185852", "GSM185853", "GSM185854", "GSM185855", "GSM185856", "GSM185857", "GSM185858", "GSM185859", "GSM185860", "GSM185861", "GSM185862", "GSM185863", "GSM185864", "GSM185865", "GSM185866", "GSM185867", "GSM185868", "GSM185869", "GSM185870", "GSM185871", "GSM185872", "GSM185873", "GSM185874", "GSM185875", "GSM185876"], "sample_count": 66, "group_sizes": null, "group_sizes_basis": null, "platform": "96", "taxon": "Homo sapiens", "title": "Expression data from Lung cancer", "resolution_checked_at": "2026-11-01T15:14:33Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE83227", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE83227", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE83227", "version": null, "note": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM2196610", "GSM2196611", "GSM2196612", "GSM2196613", "GSM2196614", "GSM2196615", "GSM2196616", "GSM2196617", "GSM2196618", "GSM2196619", "GSM2196620", "GSM2196621", "GSM2196622", "GSM2196623", "GSM2196624", "GSM2196625", "GSM2196626", "GSM2196627", "GSM2196628", "GSM2196629", "GSM2196630", "GSM2196631", "GSM2196632", "GSM2196633", "GSM2196634", "GSM2196635", "GSM2196636", "GSM2196637", "GSM2196638", "GSM2196639", "GSM2196640", "GSM2196641", "GSM2196642", "GSM2196643", "GSM2196644", "GSM2196645", "GSM2196646", "GSM2196647", "GSM2196648", "GSM2196649", "GSM2196650", "GSM2196651", "GSM2196652", "GSM2196653", "GSM2196654", "GSM2196655", "GSM2196656", "GSM2196657", "GSM2196658", "GSM2196659", "GSM2196660", "GSM2196661", "GSM2196662", "GSM2196663", "GSM2196664", "GSM2196665", "GSM2196666", "GSM2196667", "GSM2196668", "GSM2196669", "GSM2196670", "GSM2196671", "GSM2196672", "GSM2196673", "GSM2196674", "GSM2196675", "GSM2196676", "GSM2196677", "GSM2196678", "GSM2196679", "GSM2196680", "GSM2196681", "GSM2196682", "GSM2196683", "GSM2196684", "GSM2196685", "GSM2196686", "GSM2196687", "GSM2196688", "GSM2196689", "GSM2196690", "GSM2196691", "GSM2196692", "GSM2196693", "GSM2196694", "GSM2196695", "GSM2196696", "GSM2196697", "GSM2196698", "GSM2196699", "GSM2196700", "GSM2196701", "GSM2196702", "GSM2196703", "GSM2196704", "GSM2196705", "GSM2196706", "GSM2196707", "GSM2196708", "GSM2196709", "GSM2196710", "GSM2196711", "GSM2196712", "GSM2196713", "GSM2196714", "GSM2196715", "GSM2196716", "GSM2196717", "GSM2196718", "GSM2196719", "GSM2196720", "GSM2196721", "GSM2196722", "GSM2196723", "GSM2196724", "GSM2196725", "GSM2196726", "GSM2196727", "GSM2196728", "GSM2196729", "GSM2196730", "GSM2196731", "GSM2196732", "GSM2196733", "GSM2196734", "GSM2196735", "GSM2196736", "GSM2196737", "GSM2196738", "GSM2196739", "GSM2196740", "GSM2196741", "GSM2196742", "GSM2196743", "GSM2196744", "GSM2196745", "GSM2196746", "GSM2196747", "GSM2196748", "GSM2196749", "GSM2196750", "GSM2196751", "GSM2196752", "GSM2196753", "GSM2196754", "GSM2196755", "GSM2196756", "GSM2196757", "GSM2196758", "GSM2196759", "GSM2196760", "GSM2196761", "GSM2196762", "GSM2196763", "GSM2196764", "GSM2196765", "GSM2196766", "GSM2196767", "GSM2196768", "GSM2196769", "GSM2196770", "GSM2196771", "GSM2196772", "GSM2196773", "GSM2196774", "GSM2196775", "GSM2196776", "GSM2196777", "GSM2196778", "GSM2196779", "GSM2196780", "GSM2196781", "GSM2196782", "GSM2196783", "GSM2196784", "GSM2196785", "GSM2196786", "GSM2196787", "GSM2196788", "GSM2196789", "GSM2196790", "GSM2196791", "GSM2196792", "GSM2196793", "GSM2196794", "GSM2196795", "GSM2196796", "GSM2196797", "GSM2196798", "GSM2196799", "GSM2196800", "GSM2196801", "GSM2196802", "GSM2196803", "GSM2196804", "GSM2196805", "GSM2196806", "GSM2196807", "GSM2196808", "GSM2196809", "GSM2196810", "GSM2196811", "GSM2196812", "GSM2196813", "GSM2196814", "GSM2196815", "GSM2196816", "GSM2196817", "GSM2196818", "GSM2196819", "GSM2196820", "GSM2196821", "GSM2196822", "GSM2196823", "GSM2196824", "GSM2196825", "GSM2196826", "GSM2196827", "GSM2196828", "GSM2196829", "GSM2196830", "GSM2196831", "GSM2196832", "GSM2196833", "GSM2196834", "GSM2196835", "GSM2196836", "GSM2196837", "GSM2196838", "GSM2196839", "GSM2196840", "GSM2196841", "GSM2196842", "GSM2196843", "GSM2196844", "GSM2196845", "GSM2196846", "GSM2196847", "GSM2196848", "GSM2196849", "GSM2196850", "GSM2196851", "GSM2196852", "GSM2196853", "GSM2196854", "GSM2196855", "GSM2196856", "GSM2196857", "GSM2196858", "GSM2196859", "GSM2196860", "GSM2196861", "GSM2196862", "GSM2196863"], "sample_count": 254, "group_sizes": null, "group_sizes_basis": null, "platform": "8300", "taxon": "Homo sapiens", "title": "caArray_meyer-00191: Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses", "resolution_checked_at": "2026-11-01T15:39:55Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "asset:table:pmid:32595698:1", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:4d145b9bcdf2b26fdd6927bc6ce22bf009326aa3342f2e1d8b71e1a8a941023c", "bytes": 493, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[17]/table-wrap[1]#T3", "version": null, "note": "Gene set enrichment in SPP1 high-expression phenotype (based on GSE68465).", "structure": {"pmcid": "PMC7303289", "section_index": 8, "section_title": "Gene Set Enrichment Analysis", "row_count": 5, "column_count": 4}, "table": {"label": "TABLE 3", "caption": "Gene set enrichment in SPP1 high-expression phenotype (based on GSE68465).", "rows": [["Gene set name", "Normalized enrichment score", "False discovery Rate q value", "Normalized P value"], ["PROTEIN_SECRETION", "0.538", "0.211", "0.010"], ["MTORC1_SIGNALING", "0.518", "0.127", "0.006"], ["ANGIOGENESIS", "0.566", "0.138", "0.021"], ["GLYCOLYSIS", "0.422", "0.202", "0.020"]], "row_count": 5, "column_count": 4, "numeric_cells": 12, "header_rows": 1, "locator": "section[17]/table-wrap[1]#T3"}}, {"id": "asset:table:pmid:32595698:2", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:3784612abdc5214c68fa20061f78233c7999769eaf530aa3bb4f83f838579c19", "bytes": 1249, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[14]/table-wrap[1]#T1", "version": null, "note": "Associations between SPP1 expression and clinicopathological factors of patients with LUAD (based on GSE68465).", "structure": {"pmcid": "PMC7303289", "section_index": 14, "section_title": "Association Between Clinicopathological Characteristics and SPP1 mRNA Expression", "row_count": 28, "column_count": 6}, "table": {"label": "TABLE 1", "caption": "Associations between SPP1 expression and clinicopathological factors of patients with LUAD (based on GSE68465).", "rows": [["", "Total number", "SPP1", "", ""], ["Parameters", "of patients", "expression", "χ2", "P value"], ["", "", "Low", "High", "", ""], ["Gender", "443", "", "", "6.340", "0.012"], ["Male", "", "98", "125", "", ""], ["Female", "", "123", "97", "", ""], ["Age", "443", "", "", "0.435", "0.510"], ["<60 years", "", "67", "61", "", ""], ["≥60 years", "", "154", "161", "", ""], ["T stage", "441", "", "", "6.468", "0.091"], ["T1", "", "72", "78", "", ""], ["T2", "", "133", "118", "", ""], ["T3", "", "14", "14", "", ""], ["T4", "", "2", "10", "", ""], ["N stage", "440", "", "", "13.486", "0.001"], ["N0", "", "158", "141", "", ""], ["N1", "", "48", "40", "", ""], ["N2", "", "14", "39", "", ""], ["Progression or relapse", "362", "", "", "5.485", "0.019"], ["Yes", "", "96", "109", "", ""], ["No", "", "93", "64", "", ""], ["Histological grade", "436", "", "", "9.195", "0.010"], ["Well differentiated", "", "40", "20", "", ""], ["Moderate differentiation", "", "93", "116", "", ""], ["Poorly differentiated", "", "84", "83", "", ""], ["Smoking history", "349", "", "", "2.357", "0.125"], ["Yes", "", "170", "130", "", ""], ["No", "", "22", "27", "", ""]], "row_count": 28, "column_count": 6, "numeric_cells": 60, "header_rows": 3, "locator": "section[14]/table-wrap[1]#T1"}}, {"id": "asset:table:pmid:32595698:3", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:20a3e1f6ec616f511fe4bee03770db3489bcc89fa314251caab4f5fed0234e4a", "bytes": 970, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[16]/table-wrap[1]#T2", "version": null, "note": "Multivariate Cox proportional hazard regression analyses of the relationship between clinicopathological characteristics and overall survival in LUAD from the Tumor Immune Estimation Resource (TIMER).", "structure": {"pmcid": "PMC7303289", "section_index": 16, "section_title": "SPP1 Is an Independent Prognostic Marker for LUAD Patients", "row_count": 14, "column_count": 4}, "table": {"label": "TABLE 2", "caption": "Multivariate Cox proportional hazard regression analyses of the relationship between clinicopathological characteristics and overall survival in LUAD from the Tumor Immune Estimation Resource (TIMER).", "rows": [["Variables", "HR", "95% CI", "P value"], ["Age", "1.017", "1.000–1.035", "0.046"], ["Gender (male)", "0.826", "0.591–1.154", "0.262"], ["Stage2", "2.350", "1.548–3.567", "0.000"], ["Stage3", "2.999", "1.969–4.569", "0.000"], ["Stage4", "3.789", "2.068–6.941", "0.000"], ["Purity", "1.471", "0.642–3.370", "0.362"], ["B_cell", "0.040", "0.003–0.612", "0.021"], ["CD8_Tcell", "2.344", "0.341–16.136", "0.387"], ["CD4_Tcell", "36.137", "2.255–579.010", "0.011"], ["Macrophage", "0.588", "0.035–9.888", "0.712"], ["Neutrophil", "0.262", "0.005–13.909", "0.508"], ["Dendritic", "0.333", "0.077–1.444", "0.142"], ["SPP1", "1.150", "1.048–1.261", "0.003"]], "row_count": 14, "column_count": 4, "numeric_cells": 40, "header_rows": 1, "locator": "section[16]/table-wrap[1]#T2"}}, {"id": "asset:table:pmid:32595698:4", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:4d145b9bcdf2b26fdd6927bc6ce22bf009326aa3342f2e1d8b71e1a8a941023c", "bytes": 493, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[17]/table-wrap[1]#T3", "version": null, "note": "Gene set enrichment in SPP1 high-expression phenotype (based on GSE68465).", "structure": {"pmcid": "PMC7303289", "section_index": 17, "section_title": "Gene Set Enrichment Analysis", "row_count": 5, "column_count": 4}, "table": {"label": "TABLE 3", "caption": "Gene set enrichment in SPP1 high-expression phenotype (based on GSE68465).", "rows": [["Gene set name", "Normalized enrichment score", "False discovery Rate q value", "Normalized P value"], ["PROTEIN_SECRETION", "0.538", "0.211", "0.010"], ["MTORC1_SIGNALING", "0.518", "0.127", "0.006"], ["ANGIOGENESIS", "0.566", "0.138", "0.021"], ["GLYCOLYSIS", "0.422", "0.202", "0.020"]], "row_count": 5, "column_count": 4, "numeric_cells": 12, "header_rows": 1, "locator": "section[17]/table-wrap[1]#T3"}}], "gaps": ["asset:data:geo:GSE10072 not downloaded", "asset:data:geo:GSE10072 licence not read", "asset:data:geo:GSE19188 not downloaded", "asset:data:geo:GSE19188 licence not read", "asset:data:geo:GSE2514 not downloaded", "asset:data:geo:GSE2514 licence not read", "asset:data:geo:GSE31210 not downloaded", "asset:data:geo:GSE31210 licence not read", "asset:data:geo:GSE32863 not downloaded", "asset:data:geo:GSE32863 licence not read", "asset:data:geo:GSE68465 not downloaded", "asset:data:geo:GSE68465 licence not read", "asset:data:geo:GSE7670 not downloaded", "asset:data:geo:GSE7670 licence not read", "asset:data:geo:GSE83227 not downloaded", "asset:data:geo:GSE83227 licence not read"]}, "analysis": {"state": "complete", "methods": [{"id": "method-1", "family": "survival_analysis", "specific": "cox_proportional_hazards", "label": "Survival analysis", "dsl_operations": ["cox_ph"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["time_to_event_with_censoring"], "evidence": {"score": 1.0, "band": "verbatim", "quote": "The clinical relevance of LUAD immune subsets was explored by a multivariable Cox proportional hazards model, and SPP1 could be considered as an independent prognostic marker for LUAD patients (HR = 1.150; 95% CI, 1.048–1.261; P = 0.003; Table 2)."}}, {"id": "method-2", "family": "contingency_analysis", "specific": "chi_square", "label": "Categorical (contingency table) analysis", "dsl_operations": ["chi_square_test"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["categorical_cross_tabulation"], "evidence": {"score": 0.8, "band": "high", "quote": "χ2"}}], "targets": [], "gaps": []}, "capability": {"state": "complete", "requirements": [{"capability_id": "capability:computational_analysis", "label": "Computational analysis platform", "assay_families": ["meta_analysis", "machine_learning", "survival_analysis", "statistical_regression", "pca", "molecular_docking", "network_analysis", "differential_expression", "gwas"], "availability_state": "owned", "tier_unlocked": "R1", "candidate": "Automated Assays Laravel application and simulated adapters"}], "gaps": []}, "readiness": {"state": "complete", "tier": "R1", "blocking_axis": "none", "blocked_on": "nothing:replicable_now", "axes": {"method": {"tier": "R1", "expressible": true, "required_operations": ["cox_ph"], "missing_operations": [], "basis": "The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: cox_proportional_hazards."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R1", "reachable": true, "accessions": ["GSE2514", "GSE7670", "GSE10072", "GSE19188", "GSE31210", "GSE32863", "GSE83227", "GSE68465"], "resolved_accessions": ["GSE2514", "GSE7670", "GSE10072", "GSE19188", "GSE31210", "GSE32863", "GSE83227", "GSE68465"], "statements": ["All datasets generated/analyzed for this study are included/have their accession numbers included in the article/Supplementary Material."], "basis": "The paper names GSE2514, GSE7670, GSE10072, GSE19188, GSE31210, GSE32863, GSE83227, GSE68465 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": ["cox_ph"], "assets": ["source:pmid:32595698", "data:geo:GSE10072", "asset:table:pmid:32595698:1", "asset:table:pmid:32595698:2", "asset:table:pmid:32595698:3", "asset:table:pmid:32595698:4"], "steps": ["run_analysis"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:GSE10072"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-10-31T18:21:23Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": "verbatim"}, "calls": 3, "usage": {"prompt_tokens": 23360, "completion_tokens": 5411, "cached_tokens": 784}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:32595698", "type": "paper", "label": "pmid:32595698"}, {"id": "source:pmid:32595698", "type": "manuscript", "label": "PMID 32595698 full text"}, {"id": "data:geo:GSE10072", "type": "dataset", "label": "GEO GSE10072"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:32595698", "type": "paper", "label": "pmid:32595698"}, {"id": "source:pmid:32595698", "type": "manuscript", "label": "PMID 32595698 full text"}, {"id": "data:geo:GSE10072", "type": "dataset", "label": "GEO GSE10072"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-32595698", "type": "extraction", "used": ["source:pmid:32595698"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-GSE10072", "type": "accession_resolution", "used": ["data:geo:GSE10072"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:32595698", "parent_hash": "sha256:b9fa3cb2fc58ed32373c81d2c016981e51b809e9e592a59f1c4c2f260e50ccdc", "fork_of": null, "generation": 5}, "gaps": ["asset:data:geo:GSE10072 licence not read", "asset:data:geo:GSE10072 not downloaded", "asset:data:geo:GSE19188 licence not read", "asset:data:geo:GSE19188 not downloaded", "asset:data:geo:GSE2514 licence not read", "asset:data:geo:GSE2514 not downloaded", "asset:data:geo:GSE31210 licence not read", "asset:data:geo:GSE31210 not downloaded", "asset:data:geo:GSE32863 licence not read", "asset:data:geo:GSE32863 not downloaded", "asset:data:geo:GSE68465 licence not read", "asset:data:geo:GSE68465 not downloaded", "asset:data:geo:GSE7670 licence not read", "asset:data:geo:GSE7670 not downloaded", "asset:data:geo:GSE83227 licence not read", "asset:data:geo:GSE83227 not downloaded", "execution.not_run", "review.human_critique", "review.independent_reader", "review.machine_critique"], "assays": [{"role": "analysis", "definition_id": "survival_analysis", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["cox_ph"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["The clinical relevance of LUAD immune subsets was explored by a multivariable Cox proportional hazards model, and SPP1 could be considered as an independent prognostic marker for LUAD patients (HR = 1.150; 95% CI, 1.048–1.261; P = 0.003; Table 2)."], "order_basis": "analysis_only", "id": "assay:1"}]}