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pmid:32626531

Application of cAMP-dependent catalytic subunit β (PRKACB) Low Expression in Predicting Worse Overall Survival: A Potential Therapeutic Target for Colorectal Carcinoma.

Xiaoya Yao · Weixian Hu · Jie Zhang · Chengzhi Huang · Haibi Zhao · Xueqing Yao

Journal of Cancer · 2020 doi:10.7150/jca.46156

Paper

complete

Experiment

complete

Data

partial

Analysis

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Execution

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Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
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pmid:32626531
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science-record
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2026-11-01T15:41:05Z
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2026-11-01T21:23:27Z
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paper object · 10 fields
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title
Application of cAMP-dependent catalytic subunit β (PRKACB) Low Expression in Predicting Worse Overall Survival: A Potential Therapeutic Target for Colorectal Carcinoma.
doi
10.7150/jca.46156
pmid
32626531
authors array · 6 items
[0]
Xiaoya Yao
[1]
Weixian Hu
[2]
Jie Zhang
[3]
Chengzhi Huang
[4]
Haibi Zhao
[5]
Xueqing Yao
journal
Journal of Cancer
year
2020
abstract
Low expressions of PRKACB are related to the occurrence of various human malignancies. However, the prognostic value of PRKACB expression in colorectal cancer (CRC) patients remains controversial. In this analysis, PRKACB expression in CRC tumors was evaluated across the GEO, TCGA, and Oncomine databases, and a PRKACB survival analysis was performed based on the TCGA profile. We detected PRKACB in 7 GEO series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) and TCGA spectra (all P <0.05). A meta-analysis performed in the Oncomine database revealed that PRKACB was significantly up-regulated in neoplastic tissues compared to normal tissues (all P <0.05). A Kaplan-Meier analysis demonstrated that lower PRKACB expression in tumors was significantly associated with poorer overall survival (OS) in patients with CRC (P <0.05). A subgroup analysis showed that low expression of PRKACB correlated with poor 1-, 3-, and 5-year OS (all P <0.05). Furthermore, in males (P = 0.0083), whites (P = 0.0463), and non-mucinous adenocarcinoma patients (P = 0.0108), the down-regulation of PRKACB expression was more significant for the OS prognostic value. Conclusion: PRKACB is down-regulated in tumors and associated with worsening OS in CRC patients.
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A Kaplan-Meier analysis demonstrated that lower PRKACB expression in tumors was significantly associated with poorer overall survival (OS) in patients with CRC (P <0.05).
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A Kaplan-Meier analysis demonstrated that lower PRKACB expression in tumors was significantly associated with poorer overall survival (OS) in patients with CRC (P <0.05).
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GEO microarray series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) containing CRC tumor and non-tumor samples were obtained from the National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/).
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quote
GEO microarray series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) containing CRC tumor and non-tumor samples were obtained from the National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/).
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GEO microarray series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) containing CRC tumor and non-tumor samples were obtained from the National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/).
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Expression data from 30 patients with colorectal cancer
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GEO microarray series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) containing CRC tumor and non-tumor samples were obtained from the National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/).
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Clinical Significance of Osteoprotegerin Expression in Human Colorectal Cancer
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[50]
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[71]
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[115]
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[155]
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[200]
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[209]
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[210]
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[214]
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[219]
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[220]
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[221]
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[223]
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[228]
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[229]
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[230]
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[231]
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[232]
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[233]
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[234]
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[235]
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[236]
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[238]
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[239]
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[240]
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[241]
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[242]
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[243]
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[244]
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[245]
GSM1077843
sample_count
246
group_sizes
null
group_sizes_basis
null
platform
13667
taxon
Homo sapiens
title
Gene expression data from healthy, adjacent normal and tumor colon cells
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[6] object · 15 fields
id
data:geo:GSE68468
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68468
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE68468
version
null
note
GEO microarray series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) containing CRC tumor and non-tumor samples were obtained from the National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/).
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
GEO microarray series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) containing CRC tumor and non-tumor samples were obtained from the National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/).
access_statement_kind
repository_route_statement
sample_accessions array · 390 items
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[35]
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[36]
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[45]
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[48]
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[50]
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[51]
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[55]
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[56]
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[57]
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[70]
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[71]
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[99]
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[100]
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[101]
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[162]
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[198]
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[230]
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[232]
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[233]
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[234]
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[235]
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[236]
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[237]
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[240]
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[241]
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[242]
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[243]
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[244]
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[245]
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[246]
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[247]
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[248]
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[249]
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[250]
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[251]
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[252]
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[253]
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[254]
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[255]
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[256]
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[257]
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[258]
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[259]
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[260]
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[261]
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[262]
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[263]
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[264]
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[265]
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[266]
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[267]
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[268]
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[269]
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[270]
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[271]
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[272]
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[287]
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[290]
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[295]
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[300]
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[350]
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[389]
GSM1673350
sample_count
390
group_sizes
null
group_sizes_basis
null
platform
96
taxon
Homo sapiens
title
caArray_notte-00422: Molecular Dissection of Colon Cancer
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[7] object · 15 fields
id
data:geo:GSE9348
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE9348
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE9348
version
null
note
GEO microarray series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) containing CRC tumor and non-tumor samples were obtained from the National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/).
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
GEO microarray series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) containing CRC tumor and non-tumor samples were obtained from the National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/).
access_statement_kind
repository_route_statement
sample_accessions array · 82 items
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[5]
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[6]
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[42]
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[43]
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[47]
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[49]
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[50]
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[77]
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[78]
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[79]
GSM237993
[80]
GSM237994
[81]
GSM237995
sample_count
82
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Expression data from healthy controls and early stage CRC patient's tumor
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
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[8] object · 16 fields
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asset:table:pmid:32626531:1
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table
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jats-table
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application/vnd.jats.table+json
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null
sha256
sha256:c6e1e2e81ed6990124d044b9220ea99e6aa48c336fca288e43e1b28575fd8ca1
bytes
1019
access
open
state
verified
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read_table
reader_status
available
identifier
section[3]/table-wrap[1]#T1
version
null
note
Details of GEO series included in this analysis
structure object · 5 fields
pmcid
PMC7330678
section_index
3
section_title
Data resource and Description
row_count
8
column_count
5
table object · 8 fields
label
Table 1
caption
Details of GEO series included in this analysis
rows array · 8 items
[0] array · 5 items
[0]
GEO series
[1]
Contributor(s), Year
[2]
Tumor
[3]
Non-tumor
[4]
Platform
[1] array · 5 items
[0]
GSE110225
[1]
Vlachavas E, 2018
[2]
30
[3]
30
[4]
[HG-U133A] Affymetrix Human Genome U133A Array[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
[2] array · 5 items
[0]
GSE32323
[1]
Ahmed K et al., 2012
[2]
17
[3]
17
[4]
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
[3] array · 5 items
[0]
GSE44076
[1]
Solé X et al., 2014
[2]
98
[3]
98
[4]
[HG-U219] Affymetrix Human Genome U219 Array
[4] array · 5 items
[0]
GSE9348
[1]
Hong Y et al., 2010
[2]
70
[3]
12
[4]
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
[5] array · 5 items
[0]
GSE41328
[1]
Lin G et al., 2012
[2]
5
[3]
5
[4]
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
[6] array · 5 items
[0]
GSE21510
[1]
Tsukamoto S, 2011
[2]
19
[3]
25
[4]
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
[7] array · 5 items
[0]
GSE68468
[1]
NA, 2015
[2]
44
[3]
44
[4]
[HG-U133A] Affymetrix Human Genome U133A Array
locator
section[3]/table-wrap[1]#T1
[9] object · 16 fields
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asset:table:pmid:32626531:2
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jats-table
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application/vnd.jats.table+json
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available
identifier
section[13]/table-wrap[1]#T2
version
null
note
Characteristics of CRC patients between PRKACB high and low groups
structure object · 5 fields
pmcid
PMC7330678
section_index
13
section_title
Association between PRKACB and clinicopathological features in CRC patients
row_count
38
column_count
5
table object · 8 fields
label
Table 2
caption
Characteristics of CRC patients between PRKACB high and low groups
rows array · 38 items
[0] array · 5 items
[0]
[1]
[2]
High groups (n=166)
[3]
Low groups (n=165)
[4]
P
[1] array · 5 items
[0]
Gender✱
[1]
Male (n=185)
[2]
78
[3]
107
[4]
0.001
[2] array · 5 items
[0]
[1]
Female (n=146)
[2]
88
[3]
58
[4]
[3] array · 5 items
[0]
Age, median(IQR), years✱
[1]
[2]
61.5(21.75)
[3]
66(17)
[4]
0.022
[4] array · 5 items
[0]
[1]
≤60 (n=139)
[2]
80
[3]
59
[4]
[5] array · 5 items
[0]
[1]
>60 (n=192)
[2]
86
[3]
106
[4]
[6] array · 5 items
[0]
BMI, kg/m2
[1]
<18.5 (n=4)
[2]
1
[3]
3
[4]
0.836
[7] array · 5 items
[0]
[1]
18.5-24.99 (n=86)
[2]
44
[3]
42
[4]
[8] array · 5 items
[0]
[1]
25-29.99 (n=104)
[2]
53
[3]
51
[4]
[9] array · 5 items
[0]
[1]
>29.99 (n=60)
[2]
29
[3]
31
[4]
[10] array · 5 items
[0]
Tumor Stage
[1]
T1 (n=10)
[2]
4
[3]
6
[4]
0.849
[11] array · 5 items
[0]
[1]
T2 (n=49)
[2]
24
[3]
25
[4]
[12] array · 5 items
[0]
[1]
T3 (n=231)
[2]
115
[3]
116
[4]
[13] array · 5 items
[0]
[1]
T4 (n=40)
[2]
22
[3]
18
[4]
[14] array · 5 items
[0]
[1]
Tis (n=1)
[2]
1
[3]
0
[4]
[15] array · 5 items
[0]
Lymph Node Stage
[1]
N0 (n=188)
[2]
91
[3]
97
[4]
0.513
[16] array · 5 items
[0]
[1]
N1 (n=87)
[2]
46
[3]
41
[4]
[17] array · 5 items
[0]
[1]
N2 (n=54)
[2]
29
[3]
25
[4]
[18] array · 5 items
[0]
[1]
NX (n=2)
[2]
0
[3]
2
[4]
[19] array · 5 items
[0]
Metastasis Stage
[1]
M0 (n=228)
[2]
111
[3]
117
[4]
0.143
[20] array · 5 items
[0]
[1]
M1 (n=40)
[2]
26
[3]
14
[4]
[21] array · 5 items
[0]
[1]
MX (n=59)
[2]
28
[3]
31
[4]
[22] array · 5 items
[0]
AJCC stage
[1]
I (n=52)
[2]
25
[3]
27
[4]
0.213
[23] array · 5 items
[0]
[1]
II (n=125)
[2]
61
[3]
64
[4]
[24] array · 5 items
[0]
[1]
III (n=99)
[2]
47
[3]
52
[4]
[25] array · 5 items
[0]
[1]
IV (n=41)
[2]
27
[3]
14
[4]
[26] array · 5 items
[0]
Lymphovascular invasion
[1]
YES (n=89)
[2]
43
[3]
46
[4]
0.910
[27] array · 5 items
[0]
[1]
NO (n=206)
[2]
101
[3]
105
[4]
[28] array · 5 items
[0]
Perineural Invasion
[1]
YES (n=51)
[2]
30
[3]
21
[4]
0.196
[29] array · 5 items
[0]
[1]
NO (n=153)
[2]
74
[3]
79
[4]
[30] array · 5 items
[0]
Vascular invasion
[1]
YES (n=61)
[2]
31
[3]
30
[4]
0.674
[31] array · 5 items
[0]
[1]
NO (n=226)
[2]
108
[3]
118
[4]
[32] array · 5 items
[0]
Race Category
[1]
WHITE (n=232)
[2]
112
[3]
120
[4]
0.479
[33] array · 5 items
[0]
[1]
BLACK OR AFRICAN AMERICAN (n=56)
[2]
28
[3]
28
[4]
[34] array · 5 items
[0]
[1]
ASIAN (n=12)
[2]
8
[3]
4
[4]
[35] array · 5 items
[0]
[1]
AMERICAN INDIAN OR ALASKA NATIVE (n=1)
[2]
1
[3]
0
[4]
[36] array · 5 items
[0]
Person Neoplasm Status
[1]
TUMOR FREE (n=221)
[2]
115
[3]
106
[4]
0.845
[37] array · 5 items
[0]
[1]
WITH TUMOR (n=71)
[2]
36
[3]
35
[4]
locator
section[13]/table-wrap[1]#T2
gaps array · 14 items
[0]
asset:data:geo:GSE110225 not downloaded
[1]
asset:data:geo:GSE110225 licence not read
[2]
asset:data:geo:GSE21510 not downloaded
[3]
asset:data:geo:GSE21510 licence not read
[4]
asset:data:geo:GSE32323 not downloaded
[5]
asset:data:geo:GSE32323 licence not read
[6]
asset:data:geo:GSE41328 not downloaded
[7]
asset:data:geo:GSE41328 licence not read
[8]
asset:data:geo:GSE44076 not downloaded
[9]
asset:data:geo:GSE44076 licence not read
[10]
asset:data:geo:GSE68468 not downloaded
[11]
asset:data:geo:GSE68468 licence not read
[12]
asset:data:geo:GSE9348 not downloaded
[13]
asset:data:geo:GSE9348 licence not read
analysis object · 4 fields
state
complete
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[0] object · 10 fields
id
method-1
family
survival_analysis
specific
kaplan_meier
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Survival analysis
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[0]
survival_km
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parameters object · 0 fields
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[0]
time_to_event_with_censoring
evidence object · 3 fields
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1
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verbatim
quote
A Kaplan-Meier analysis demonstrated that lower PRKACB expression in tumors was significantly associated with poorer overall survival (OS) in patients with CRC (P <0.05).
[1] object · 10 fields
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method-2
family
survival_analysis
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Survival analysis
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[0]
logrank_test
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[0]
time_to_event_with_censoring
evidence object · 3 fields
score
0.8
band
high
quote
log rank
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capability object · 3 fields
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complete
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[0] object · 6 fields
capability_id
capability:computational_analysis
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Computational analysis platform
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[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
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readiness object · 8 fields
state
complete
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R1
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nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
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true
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[0]
survival_km
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basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: kaplan_meier.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 7 items
[0]
GSE110225
[1]
GSE32323
[2]
GSE44076
[3]
GSE9348
[4]
GSE41328
[5]
GSE21510
[6]
GSE68468
resolved_accessions array · 7 items
[0]
GSE110225
[1]
GSE32323
[2]
GSE44076
[3]
GSE9348
[4]
GSE41328
[5]
GSE21510
[6]
GSE68468
statements array · 1 item
[0]
GEO microarray series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) containing CRC tumor and non-tumor samples were obtained from the National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/).
basis
The paper names GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468 in National Center for Biotechnology Information's (NCBI) Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 1 item
[0]
survival_km
assets array · 4 items
[0]
source:pmid:32626531
[1]
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[2]
asset:table:pmid:32626531:1
[3]
asset:table:pmid:32626531:2
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[0]
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data:geo:GSE110225
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MiniMax-M3.1-Flash
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minimax
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minimax
read_at
2026-10-31T18:20:52Z
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single_reader
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verbatim
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null
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25782
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1623
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792
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[0] object · 4 fields
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extraction
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complete
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MiniMax-M3.1-Flash
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minimax
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pmid:32626531
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pmid:32626531
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source:pmid:32626531
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PMID 32626531 full text
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data:geo:GSE110225
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pmid:32626531
[1] object · 3 fields
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source:pmid:32626531
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PMID 32626531 full text
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data:geo:GSE110225
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GEO GSE110225
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[1]
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[3]
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[5]
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[6]
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[7]
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[8]
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[9]
asset:data:geo:GSE44076 not downloaded
[10]
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[11]
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[12]
asset:data:geo:GSE9348 licence not read
[13]
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[14]
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[16]
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[17]
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[0]
A Kaplan-Meier analysis demonstrated that lower PRKACB expression in tumors was significantly associated with poorer overall survival (OS) in patients with CRC (P <0.05).
order_basis
analysis_only
id
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Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:32626531", "kind": "science-record", "revision": 7, "content_hash": "sha256:591bac34fe4956127da82f250c925376f322a213d86432e1431c63f3117d82cd", "created_at": "2026-11-01T15:41:05Z", "updated_at": "2026-11-01T21:23:27Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Application of cAMP-dependent catalytic subunit β (PRKACB) Low Expression in Predicting Worse Overall Survival: A Potential Therapeutic Target for Colorectal Carcinoma.", "doi": "10.7150/jca.46156", "pmid": "32626531", "authors": ["Xiaoya Yao", "Weixian Hu", "Jie Zhang", "Chengzhi Huang", "Haibi Zhao", "Xueqing Yao"], "journal": "Journal of Cancer", "year": 2020, "abstract": "Low expressions of PRKACB are related to the occurrence of various human malignancies. However, the prognostic value of PRKACB expression in colorectal cancer (CRC) patients remains controversial. In this analysis, PRKACB expression in CRC tumors was evaluated across the GEO, TCGA, and Oncomine databases, and a PRKACB survival analysis was performed based on the TCGA profile. We detected PRKACB in 7 GEO series (GSE110225, GSE32323, GSE44076, GSE9348, GSE41328, GSE21510, GSE68468) and TCGA spectra (all P <0.05). A meta-analysis performed in the Oncomine database revealed that PRKACB was significantly up-regulated in neoplastic tissues compared to normal tissues (all P <0.05). A Kaplan-Meier analysis demonstrated that lower PRKACB expression in tumors was significantly associated with poorer overall survival (OS) in patients with CRC (P <0.05). A subgroup analysis showed that low expression of PRKACB correlated with poor 1-, 3-, and 5-year OS (all P <0.05). Furthermore, in males (P = 0.0083), whites (P = 0.0463), and non-mucinous adenocarcinoma patients (P = 0.0108), the down-regulation of PRKACB expression was more significant for the OS prognostic value. 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This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE110225"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE110225"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:32626531", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.7150/jca.46156", "sha256": 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Genome U133 Plus 2.0 Array"], ["GSE21510", "Tsukamoto S, 2011", "19", "25", "[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array"], ["GSE68468", "NA, 2015", "44", "44", "[HG-U133A] Affymetrix Human Genome U133A Array"]], "row_count": 8, "column_count": 5, "numeric_cells": 35, "header_rows": 1, "locator": "section[3]/table-wrap[1]#T1"}}, {"id": "asset:table:pmid:32626531:2", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:75b5a971cf02bbccaf6ce34e95389d8fe60520652a2125eefe65f9eea160cd9f", "bytes": 1759, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[13]/table-wrap[1]#T2", "version": null, "note": "Characteristics of CRC patients between PRKACB high and low groups", "structure": {"pmcid": "PMC7330678", "section_index": 13, "section_title": "Association between PRKACB and clinicopathological features in CRC patients", "row_count": 38, "column_count": 5}, "table": {"label": "Table 2", "caption": "Characteristics of CRC patients between PRKACB high and low groups", "rows": [["", "", "High groups (n=166)", "Low groups (n=165)", "P"], ["Gender✱", "Male (n=185)", "78", "107", "0.001"], ["", "Female (n=146)", "88", "58", ""], ["Age, median(IQR), years✱", "", "61.5(21.75)", "66(17)", "0.022"], ["", "≤60 (n=139)", "80", "59", ""], ["", ">60 (n=192)", "86", "106", ""], ["BMI, kg/m2", "<18.5 (n=4)", "1", "3", "0.836"], ["", "18.5-24.99 (n=86)", "44", "42", ""], ["", "25-29.99 (n=104)", "53", "51", ""], ["", ">29.99 (n=60)", "29", "31", ""], ["Tumor Stage", "T1 (n=10)", "4", "6", "0.849"], ["", "T2 (n=49)", "24", "25", ""], ["", "T3 (n=231)", "115", "116", ""], ["", "T4 (n=40)", "22", "18", ""], ["", "Tis (n=1)", "1", "0", ""], ["Lymph Node Stage", "N0 (n=188)", "91", "97", "0.513"], ["", "N1 (n=87)", "46", "41", ""], ["", "N2 (n=54)", "29", "25", ""], ["", "NX (n=2)", "0", "2", ""], ["Metastasis Stage", "M0 (n=228)", "111", 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["asset:data:geo:GSE110225 not downloaded", "asset:data:geo:GSE110225 licence not read", "asset:data:geo:GSE21510 not downloaded", "asset:data:geo:GSE21510 licence not read", "asset:data:geo:GSE32323 not downloaded", "asset:data:geo:GSE32323 licence not read", "asset:data:geo:GSE41328 not downloaded", "asset:data:geo:GSE41328 licence not read", "asset:data:geo:GSE44076 not downloaded", "asset:data:geo:GSE44076 licence not read", "asset:data:geo:GSE68468 not downloaded", "asset:data:geo:GSE68468 licence not read", "asset:data:geo:GSE9348 not downloaded", "asset:data:geo:GSE9348 licence not read"]}, "analysis": {"state": "complete", "methods": [{"id": "method-1", "family": "survival_analysis", "specific": "kaplan_meier", "label": "Survival analysis", "dsl_operations": ["survival_km"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["time_to_event_with_censoring"], "evidence": {"score": 1.0, "band": "verbatim", "quote": "A Kaplan-Meier analysis 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"readiness": {"state": "complete", "tier": "R1", "blocking_axis": "none", "blocked_on": "nothing:replicable_now", "axes": {"method": {"tier": "R1", "expressible": true, "required_operations": ["survival_km"], "missing_operations": [], "basis": "The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: kaplan_meier."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. 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No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": ["survival_km"], "assets": ["source:pmid:32626531", "data:geo:GSE110225", "asset:table:pmid:32626531:1", "asset:table:pmid:32626531:2"], "steps": ["run_analysis"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:GSE110225"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-10-31T18:20:52Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": null}, "calls": 3, "usage": {"prompt_tokens": 25782, "completion_tokens": 1623, "cached_tokens": 792}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:32626531", "type": "paper", "label": "pmid:32626531"}, {"id": "source:pmid:32626531", "type": "manuscript", "label": "PMID 32626531 full text"}, {"id": "data:geo:GSE110225", "type": "dataset", "label": "GEO GSE110225"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:32626531", "type": "paper", "label": "pmid:32626531"}, {"id": "source:pmid:32626531", "type": "manuscript", "label": "PMID 32626531 full text"}, {"id": "data:geo:GSE110225", "type": "dataset", "label": "GEO GSE110225"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-32626531", "type": "extraction", "used": ["source:pmid:32626531"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-GSE110225", "type": "accession_resolution", "used": ["data:geo:GSE110225"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:32626531", "parent_hash": "sha256:93b18aea8baa6b0e891b2826873170a4484fbde62a74d3340b7669d509147554", "fork_of": null, "generation": 6}, "gaps": ["asset:data:geo:GSE110225 licence not read", "asset:data:geo:GSE110225 not downloaded", "asset:data:geo:GSE21510 licence not read", "asset:data:geo:GSE21510 not downloaded", "asset:data:geo:GSE32323 licence not read", "asset:data:geo:GSE32323 not downloaded", "asset:data:geo:GSE41328 licence not read", "asset:data:geo:GSE41328 not downloaded", "asset:data:geo:GSE44076 licence not read", "asset:data:geo:GSE44076 not downloaded", "asset:data:geo:GSE68468 licence not read", "asset:data:geo:GSE68468 not downloaded", "asset:data:geo:GSE9348 licence not read", "asset:data:geo:GSE9348 not downloaded", "execution.not_run", "review.human_critique", "review.independent_reader", "review.machine_critique"], "assays": [{"role": "analysis", "definition_id": "survival_analysis", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["survival_km"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["A Kaplan-Meier analysis demonstrated that lower PRKACB expression in tumors was significantly associated with poorer overall survival (OS) in patients with CRC (P <0.05)."], "order_basis": "analysis_only", "id": "assay:1"}]}