pmid:33251083
Identification of potential mRNA panels for severe acute respiratory syndrome coronavirus 2 (COVID-19) diagnosis and treatment using microarray dataset and bioinformatics methods.
Basavaraj Vastrad · Chanabasayya Vastrad · Anandkumar Tengli
3 Biotech · 2020 doi:10.1007/s13205-020-02406-y
Abstract
The goal of the present investigation is to identify the differentially expressed genes (DEGs) between SARS-CoV-2 infected and normal control samples to investigate the molecular mechanisms of infection with SARS-CoV-2. The microarray data of the dataset E-MTAB-8871 were retrieved from the ArrayExpress database. Pathway and Gene Ontology (GO) enrichment study, protein-protein interaction (PPI) network, modules, target gene-miRNA regulatory network, and target gene-TF regulatory network have been performed. Subsequently, the key genes were validated using an analysis of the receiver operating characteristic (ROC) curve. In SARS-CoV-2 infection, a total of 324 DEGs (76 up- and 248 down-regulated genes) were identified and enriched in a number of associated SARS-CoV-2 infection pathways and GO terms. Hub and target genes such as TP53, HRAS, MAPK11, RELA, IKZF3, IFNAR2, SKI, TNFRSF13C, JAK1, TRAF6, KLRF2, CD1A were identified from PPI network, target gene-miRNA regulatory network, and target gene-TF regulatory network. Study of the ROC showed that ten genes (CCL5, IFNAR2, JAK2, MX1, STAT1, BID, CD55, CD80, HAL-B, and HLA-DMA) were substantially involved in SARS-CoV-2 patients. The present investigation identified key genes and pathways that deepen our understanding of the molecular mechanisms of SARS-CoV-2 infection, and could be used for SARS-CoV-2 infection as diagnostic and therapeutic biomarkers.
The publication
- PubMed · PMID 33251083 The record in the National Library of Medicine.
- The publisher's article · doi:10.1007/s13205-020-02406-y 3 Biotech · 2020
- Basavaraj Vastrad · Chanabasayya Vastrad · Anandkumar Tengli
Source data and code
- 10.1007/s13205-020-02406-y manuscript · resolved
- E-MTAB-8871 raw · resolved
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Five-stage experiment
- 1 data generation Definition microarray · partial
- 2 normalise counts Definition differential_expression · supported
The order is the order the experiment runs them in. The full definitions, contracts and evidence are in the file below.
Paper
complete
Experiment
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Data
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Analysis
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Execution
absent
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[275] array · 7 items
[276] array · 7 items
[8] object · 16 fields
structure object · 5 fields
table object · 8 fields
rows array · 185 items
[0] array · 8 items
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[180] array · 8 items
[181] array · 8 items
[182] array · 8 items
[183] array · 8 items
[184] array · 8 items
[9] object · 16 fields
structure object · 5 fields
table object · 8 fields
rows array · 75 items
[0] array · 8 items
[1] array · 8 items
[2] array · 8 items
[3] array · 8 items
[4] array · 8 items
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[70] array · 8 items
[71] array · 8 items
[72] array · 8 items
[73] array · 8 items
[74] array · 8 items
[10] object · 16 fields
structure object · 5 fields
table object · 8 fields
rows array · 325 items
[0] array · 7 items
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[324] array · 7 items
[11] object · 16 fields
structure object · 5 fields
table object · 8 fields
rows array · 73 items
[0] array · 1 item
[1] array · 8 items
[2] array · 8 items
[3] array · 8 items
[4] array · 8 items
[5] array · 8 items
[6] array · 8 items
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[15] array · 1 item
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[26] array · 1 item
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[59] array · 1 item
[60] array · 8 items
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[64] array · 8 items
[65] array · 8 items
[66] array · 8 items
[67] array · 8 items
[68] array · 8 items
[69] array · 8 items
[70] array · 1 item
[71] array · 8 items
[72] array · 8 items
[12] object · 16 fields
structure object · 5 fields
table object · 8 fields
rows array · 91 items
[0] array · 8 items
[1] array · 8 items
[2] array · 8 items
[3] array · 8 items
[4] array · 8 items
[5] array · 8 items
[6] array · 8 items
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[84] array · 8 items
[85] array · 8 items
[86] array · 8 items
[87] array · 8 items
[88] array · 8 items
[89] array · 8 items
[90] array · 8 items
[13] object · 16 fields
structure object · 5 fields
table object · 8 fields
rows array · 31 items
[0] array · 9 items
[1] array · 9 items
[2] array · 9 items
[3] array · 9 items
[4] array · 9 items
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[25] array · 9 items
[26] array · 9 items
[27] array · 9 items
[28] array · 9 items
[29] array · 9 items
[30] array · 9 items
[14] object · 16 fields
structure object · 5 fields
table object · 8 fields
rows array · 32 items
[0] array · 9 items
[1] array · 9 items
[2] array · 9 items
[3] array · 9 items
[4] array · 9 items
[5] array · 9 items
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[25] array · 9 items
[26] array · 9 items
[27] array · 9 items
[28] array · 9 items
[29] array · 9 items
[30] array · 9 items
[31] array · 9 items
[15] object · 16 fields
structure object · 5 fields
table object · 8 fields
rows array · 277 items
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Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:33251083", "kind": "science-record", "revision": 8, "content_hash": "sha256:67a403dcfd2847afeba72fb21abfc7c5844dde2af2b8a59a00407952574dc67e", "created_at": "2026-11-01T15:41:17Z", "updated_at": "2026-11-01T22:45:41Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Identification of potential mRNA panels for severe acute respiratory syndrome coronavirus 2 (COVID-19) diagnosis and treatment using microarray dataset and bioinformatics methods.", "doi": "10.1007/s13205-020-02406-y", "pmid": "33251083", "authors": ["Basavaraj Vastrad", "Chanabasayya Vastrad", "Anandkumar Tengli"], "journal": "3 Biotech", "year": 2020, "abstract": "The goal of the present investigation is to identify the differentially expressed genes (DEGs) between SARS-CoV-2 infected and normal control samples to investigate the molecular mechanisms of infection with SARS-CoV-2. The microarray data of the dataset E-MTAB-8871 were retrieved from the ArrayExpress database. Pathway and Gene Ontology (GO) enrichment study, protein-protein interaction (PPI) network, modules, target gene-miRNA regulatory network, and target gene-TF regulatory network have been performed. Subsequently, the key genes were validated using an analysis of the receiver operating characteristic (ROC) curve. In SARS-CoV-2 infection, a total of 324 DEGs (76 up- and 248 down-regulated genes) were identified and enriched in a number of associated SARS-CoV-2 infection pathways and GO terms. Hub and target genes such as TP53, HRAS, MAPK11, RELA, IKZF3, IFNAR2, SKI, TNFRSF13C, JAK1, TRAF6, KLRF2, CD1A were identified from PPI network, target gene-miRNA regulatory network, and target gene-TF regulatory network. Study of the ROC showed that ten genes (CCL5, IFNAR2, JAK2, MX1, STAT1, BID, CD55, CD80, HAL-B, and HLA-DMA) were substantially involved in SARS-CoV-2 patients. The present investigation identified key genes and pathways that deepen our understanding of the molecular mechanisms of SARS-CoV-2 infection, and could be used for SARS-CoV-2 infection as diagnostic and therapeutic biomarkers.", "claims": [{"id": "claim-method", "statement": "The limma package in R Software was used for background correction, quantile normalization and probe summarization, and limma package was also applied for DEGs identification (Ritchie et al. 2015).", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:33251083", "locator": "sections[4] \"Identification of DEGs\" paragraph 2", "quote": "The limma package in R Software was used for background correction, quantile normalization and probe summarization, and limma package was also applied for DEGs identification (Ritchie et al. 2015)."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The datasets supporting the conclusions of this article are available in the ArrayExpress (https://www.ebi.ac.uk/arrayexpress) repository. [(E-MTAB-8871) (https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8871/)].", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:33251083", "locator": "sections[23] \"notes\" paragraph 1", "quote": "The datasets supporting the conclusions of this article are available in the ArrayExpress (https://www.ebi.ac.uk/arrayexpress) repository. [(E-MTAB-8871) (https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8871/)]."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": null, "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:33251083"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. 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[(E-MTAB-8871) (https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8871/)].", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "The datasets supporting the conclusions of this article are available in the ArrayExpress (https://www.ebi.ac.uk/arrayexpress) repository. [(E-MTAB-8871) (https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8871/)].", "access_statement_kind": "data_availability_statement", "sample_accessions": [], "sample_count": null, "group_sizes": null, "group_sizes_basis": null, "platform": null, "taxon": null, "title": null, "resolution_checked_at": "2026-10-31T18:29:04Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "asset:table:pmid:33251083:1", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:ab2eb6a7044b00eb51c3c4e6fc432d9d6c9edd8c43fbcf05a2e22a783d99f064", "bytes": 32962, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[12]/table-wrap[1]#Tab1", "version": null, "note": "The statistical metrics for key differentially expressed genes (DEGs)", "structure": {"pmcid": "PMC7679428", "section_index": 4, "section_title": "Identification of DEGs", "row_count": 325, "column_count": 7}, "table": {"label": "Table 1", "caption": "The statistical metrics for key differentially expressed genes (DEGs)", "rows": [["Gene Symbol", "logFC", "pValue", "adj.P.Val", "t value", "Regulation", "Gene Name"], ["JAK1", "0.641818", "1.84E − 11", "1.84E − 11", "9.973193", "Up", "Janus kinase 1"], ["ZAP70", "0.810545", "2.91E − 10", "2.91E − 10", "8.897328", "Up", "Zeta chain of T cell receptor associated protein kinase 70"], ["CCR5", "1.239182", "3.04E − 10", "3.04E − 10", "8.880753", "Up", "C–C motif chemokine receptor 5 (gene/pseudogene)"], ["CTNNB1", "0.633545", "4.11E − 10", "4.11E − 10", "8.766907", "Up", "Catenin beta 1"], ["TRAF6", "0.644773", "7.11E − 10", "7.11E − 10", "8.561082", "Up", "TNF receptor associated factor 6"], ["FYN", "0.536182", "1.96E − 08", "1.96E − 08", "7.357891", "Up", "FYN proto-oncogene, Src family tyrosine kinase"], ["HRAS", "0.668773", "2.14E − 08", "2.14E − 08", "7.325507", "Up", "HRas proto-oncogene, GTPase"], ["ITGB2", "0.805182", "2.8E − 06", "2.8E − 06", "5.644273", "Up", "Integrin subunit beta 2"], ["ZBTB16", "1.099955", "3.88E − 06", "3.88E − 06", "5.53388", "Up", "Zinc finger and BTB domain containing 16"], ["ABL1", "0.468091", "4.46E − 06", "4.46E − 06", "5.486138", "Up", "ABL proto-oncogene 1, non-receptor tyrosine kinase"], ["CX3CR1", "0.834227", "6.3E − 06", "6.3E − 06", "5.369313", "Up", "C-X3-C motif chemokine receptor 1"], ["PDCD1", "0.880955", "7.79E − 06", "7.79E − 06", "5.297093", "Up", "Programmed cell death 1"], ["IRF5", "0.884364", "1.56E − 05", "1.56E − 05", "5.062275", "Up", "Interferon regulatory factor 5"], ["IL2RG", "0.590818", "1.7E − 05", "1.7E − 05", "5.032467", "Up", "Interleukin 2 receptor subunit gamma"], ["IKZF3", "0.467273", "1.78E − 0E − 05", "1.78E − 05", "5.016592", "Up", "IKAROS family zinc finger 3"], ["CCR1", "1.613727", "2.3E − 05", "2.3E − 05", "4.929543", "Up", "C–C motif chemokine receptor 1"], ["CD99", "0.398773", "4.76E − 05", "4.76E − 05", "4.681138", "Up", "CD99 molecule (Xg blood group)"], ["SMAD5", "0.349818", "5.02E − 05", "5.02E − 05", "4.662446", "Up", "SMAD family member 5"], ["CD247", "0.51", "5.34E − 05", "5.34E − 05", "4.641555", "Up", "CD247 molecule"], ["TP53", "0.372273", "5.85E − 05", "5.85E − 05", "4.609909", "Up", "Tumor protein p53"], ["LAG3", "0.988591", "6.64E − 05", "6.64E − 05", "4.566916", "Up", "Lymphocyte activating 3"], ["LCP2", "0.432682", "6.74E − 05", "6.74E − 05", "4.561553", "Up", "Lymphocyte cytosolic protein 2"], ["SLAMF7", "0.577409", "8.58E − 05", "8.58E − 05", "4.478485", "Up", "SLAM family member 7"], ["TMEM173", "0.377318", "0.000103", "0.000103", "4.416144", "Up", "Transmembrane protein 173"], ["CUL9", "0.4155", "0.000119", "0.000119", "4.366647", "Up", "Cullin 9"], ["C2", "1.280182", "0.000153", "0.000153", "4.279415", "Up", "Complement C2"], ["GNLY", "1.067364", "0.000167", "0.000167", "4.248083", "Up", "Granulysin"], ["ATG10", "0.490955", "0.000234", "0.000234", "4.130655", "Up", "Autophagy related 10"], ["IKZF1", "0.321682", "0.000285", "0.000285", "4.061503", "Up", "IKAROS family zinc finger 1"], ["KIR_Activating_Subgroup_2", "1.279318", "0.00043", "0.00043", "3.915229", "Up", "Killer-cell immunoglobulin-like receptorSubgroup 2"], ["ITGAL", "0.370273", "0.000461", "0.000461", "3.890576", "Up", "Integrin subunit alpha L"], ["SERPING1", "1.992773", "0.00057", "0.00057", "3.815201", "Up", "Serpin family G member 1"], ["STAT1", "1.066864", "0.000762", "0.000762", "3.711251", "Up", "signal transducer and activator of transcription 1"], ["CCRL2", "0.621773", "0.000844", "0.000844", "3.674266", "Up", "C–C motif chemokine receptor like 2"], ["RUNX1", "0.392409", "0.001035", "0.001035", "3.600334", "Up", "RUNX family transcription factor 1"], ["KIR_Activating_Subgroup_1", "1.243455", "0.001444", "0.001444", "3.478418", "Up", "Killer-cell immunoglobulin-like receptor Subgroup 1"], ["IFIH1", "1.189", "0.001492", "0.001492", "3.466339", "Up", "Interferon induced with helicase C domain 1"], ["GP1BB", "1.252364", "0.001517", "0.001517", "3.460324", "Up", "Glycoprotein Ib platelet subunit beta"], ["TBX21", "0.557591", "0.001716", "0.001716", "3.414736", "Up", "T-box transcription factor 21"], ["BST2", "0.825727", "0.00183", "0.00183", "3.390875", "Up", "Bone marrow stromal cell antigen 2"], ["JAK2", "0.436727", "0.001927", "0.001927", "3.371677", "Up", "Janus kinase 2"], ["PSMB9", "0.490864", "0.001928", "0.001928", "3.371431", "Up", "Proteasome 20S subunit beta 9"], ["XBP1", "0.485455", "0.002051", "0.002051", "3.348399", "Up", "X-box binding protein 1"], ["GBP1", "0.999545", "0.003627", "0.003627", "3.133218", "Up", "Guanylate binding protein 1"], ["STAT4", "0.295591", "0.003667", "0.003667", "3.129061", "Up", "Signal transducer and activator of transcription 4"], ["MAP4K1", "0.2385", "0.003959", "0.003959", "3.099644", "Up", "Mitogen-activated protein kinase kinasekinasekinase 1"], ["CCND3", "0.326591", "0.004076", "0.004076", "3.08846", "Up", "cyclin D3"], ["LILRA6", "0.817091", "0.004839", "0.004839", "3.022071", "Up", "Leukocyte immunoglobulin like receptor A6"], ["GFI1", "0.495591", "0.005741", "0.005741", "2.955427", "Up", "Growth factor independent 1 transcriptional repressor"], ["HLA-A", "0.385909", "0.005824", "0.005824", "2.949825", "Up", "Major histocompatibility complex, class I, A"], ["IL18RAP", "0.982227", "0.006135", "0.006135", "2.929331", "Up", "Interleukin 18 receptor accessory protein"], ["C1QBP", "0.264182", "0.006145", "0.006145", "2.928686", "Up", "Complement C1q binding protein"], ["CCL5", "0.3105", "0.006563", "0.006563", "2.902767", "Up", "C–C motif chemokine ligand 5"], ["SOCS1", "0.704318", "0.007115", "0.007115", "2.870801", "Up", "Suppressor of cytokine signaling 1"], ["STAT3", "0.370545", "0.010179", "0.010179", "2.72698", "Up", "Signal transducer and activator of transcription 3"], ["CEACAM1", "0.784909", "0.011682", "0.011682", "2.670737", "Up", "CEA cell adhesion molecule 1"], ["TLR2", "0.589773", "0.013287", "0.013287", "2.617647", "Up", "toll like receptor 2"], ["KLRK1", "0.358136", "0.014239", "0.014239", "2.588898", "Up", "killer cell lectin like receptor K1"], ["MAP4K2", "0.221227", "0.018828", "0.018828", "2.471244", "Up", "Mitogen-activated protein kinase kinasekinasekinase 2"], ["KLRC1", "0.7945", "0.019896", "0.019896", "2.4477", "Up", "Killer cell lectin like receptor C1"], ["ATG5", "0.327", "0.020137", "0.020137", "2.44253", "Up", "Autophagy related 5"], ["IL18R1", "0.713136", "0.020905", "0.020905", "2.426467", "Up", "Interleukin 18 receptor 1"], ["IKBKB", "0.1695", "0.027641", "0.027641", "2.304841", "Up", "Inhibitor of nuclear factor kappa B kinase subunit beta"], ["STAT5B", "0.2575", "0.032278", "0.032278", "2.235871", "Up", "Signal transducer and activator of transcription 5B"], ["MX1", "1.111727", "0.032817", "0.032817", "2.228441", "Up", "MX dynamin like GTPase 1"], ["IRF7", "0.898909", "0.033248", "0.033248", "2.222589", "Up", "Interferon regulatory factor 7"], ["TRAF2", "0.171955", "0.034273", "0.034273", "2.208908", "Up", "TNF receptor associated factor 2"], ["IFI35", "0.725909", "0.035093", "0.035093", "2.198229", "Up", "Interferon induced protein 35"], ["IKBKE", "0.236545", "0.035149", "0.035149", "2.197514", "Up", "Inhibitor of nuclear factor kappa B kinase subunit epsilon"], ["CLEC7A", "0.421227", "0.037828", "0.037828", "2.164155", "Up", "C-type lectin domain containing 7A"], ["LTB4R", "0.465227", "0.03902", "0.03902", "2.149988", "Up", "Leukotriene B4 receptor"], ["GZMB", "0.437364", "0.040654", "0.040654", "2.131179", "Up", "Granzyme B"], ["NLRP3", "0.290364", "0.04286", "0.04286", "2.106829", "Up", "NLR family pyrin domain containing 3"], ["LILRB2", "0.299364", "0.042931", "0.042931", "2.106059", "Up", "Leukocyte immunoglobulin like receptor B2"], ["IFNAR2", "0.184136", "0.048633", "0.048633", "2.047965", "Up", "Interferon alpha and beta receptor subunit 2"], ["KLRD1", "0.4455", "0.049759", "0.049759", "2.037205", "Up", "Killer cell lectin like receptor D1"], ["CD19", "− 1.7175", "5.18E − 16", "5.18E − 16", "− 14.7177", "Down", "CD19 molecule"], ["CD22", "− 1.757", "4.93E − 15", "4.93E − 15", "− 13.592", "Down", "CD22 molecule"], ["MS4A1", "− 1.67741", "1.67E − 14", "1.67E − 14", "− 13.0082", "Down", "Membrane spanning 4-domains A1"], ["CD45RB", "− 0.94709", "4.17E − 14", "4.17E − 14", "− 12.5832", "Down", "Receptor-Type Tyrosine-Protein Phosphatase C"], ["IL6R", "− 2.0375", "1.05E − 13", "1.05E − 13", "− 12.164", "Down", "interleukin 6 receptor"], ["TNFRSF13C", "− 1.46186", "2.18E − 13", "2.18E − 13", "− 11.8375", "Down", "TNF receptor superfamily member 13C"], ["PAX5", "− 1.37636", "2.92E − 13", "2.92E − 13", "− 11.7085", "Down", "Paired box 5"], ["CD79A", "− 1.29577", "2.53E − 12", "2.53E − 12", "− 10.7841", "Down", "CD79a molecule"], ["ARHGDIB", "− 0.65064", "3.68E − 12", "3.68E − 12", "− 10.6278", "Down", "Rho GDP dissociation inhibitor beta"], ["HLA-DQB1", "− 4.88305", "5.18E − 12", "5.18E − 12", "− 10.4865", "Down", "Major histocompatibility complex, class II, DQ beta 1"], ["HLA-DQA1", "− 6.1155", "1.8E − 11", "1.8E − 11", "− 9.98021", "Down", "Major histocompatibility complex, class II, DQ alpha 1"], ["MAPKAPK2", "− 0.99755", "5.49E − 11", "5.49E − 11", "− 9.53915", "Down", "MAPK activated protein kinase 2"], ["SLAMF6", "− 0.87414", "2.16E − 10", "2.16E − 10", "− 9.01008", "Down", "SLAM family member 6"], ["PTGER4", "− 0.76932", "2.43E − 10", "2.43E − 10", "− 8.96519", "Down", "Prostaglandin E receptor 4"], ["CD79B", "− 0.84082", "2.75E − 10", "2.75E − 10", "− 8.91788", "Down", "CD79b molecule"], ["CD97", "− 1.1985", "3.22E − 10", "3.22E − 10", "− 8.85915", "Down", "Leukocyte antigen CD97"], ["IL1RL2", "− 1.04873", "3.57E − 10", "3.57E − 10", "− 8.81964", "Down", "Interleukin 1 receptor like 2"], ["CD1A", "− 1.07114", "3.6E − 10", "3.6E − 10", "− 8.81626", "Down", "CD1a molecule"], ["IL1RAP", "− 1.43418", "8.92E − 10", "8.92E − 10", "− 8.47672", "Down", "Interleukin 1 receptor accessory protein"], ["TNFSF12", "− 0.53718", "2.42E − 09", "2.42E − 09", "− 8.10915", "Down", "TNF superfamily member 12"], ["AICDA", "− 0.94759", "2.89E − 09", "2.89E − 09", "− 8.04473", "Down", "Activation induced cytidinedeaminase"], ["MBP", "− 0.77614", "4.02E − 09", "4.02E − 09", "− 7.92468", "Down", "myelin basic protein"], ["TRAF4", "− 0.67777", "5.69E − 09", "5.69E − 09", "− 7.79888", "Down", "TNF receptor associated factor 4"], ["MIF", "− 0.59309", "5.94E − 09", "5.94E − 09", "− 7.78344", "Down", "Macrophage migration inhibitory factor"], ["CCBP2", "− 1.34027", "6.31E − 09", "6.31E − 09", "− 7.76207", "Down", "Chemokine-binding protein 2"], ["CCL22", "− 0.68986", "8.3E − 09", "8.3E − 09", "− 7.66358", "Down", "C–C motif chemokine ligand 22"], ["HLA-DRA", "− 1.87223", "9.28E − 09", "9.28E − 09", "− 7.62328", "Down", "Major histocompatibility complex, class II, DR alpha"], ["FCER1A", "− 2.15768", "9.79E − 09", "9.79E − 09", "− 7.60411", "Down", "Fc fragment of IgE receptor Ia"], ["LILRB5", "− 0.76595", "1.11E − 08", "1.11E − 08", "− 7.55809", "Down", "Leukocyte immunoglobulin like receptor B5"], ["CCL15", "− 0.7105", "1.48E − 08", "1.48E − 08", "− 7.4567", "Down", "C–C motif chemokine ligand 15"], ["IL12B", "− 0.99886", "1.5E − 08", "1.5E − 08", "− 7.45174", "Down", "Interleukin 12B"], ["TFRC", "− 1.07782", "1.61E − 08", "1.61E − 08", "− 7.42698", "Down", "Transferrin receptor"], ["EBI3", "− 0.72195", "1.86E − 08", "1.86E − 08", "− 7.37653", "Down", "Epstein-Barr virus induced 3"], ["IL4", "− 0.69941", "2.72E − 08", "2.72E − 08", "− 7.24189", "Down", "Interleukin 4"], ["ICAM2", "− 0.74745", "2.86E − 08", "2.86E − 08", "− 7.22422", "Down", "Intercellular adhesion molecule 2"], ["KLRAP1", "− 1.0865", "3.09E − 08", "3.09E − 08", "− 7.19683", "Down", "Killer cell lectin-like receptor subfamily A pseudogene 1"], ["CD40", "− 0.79436", "3.29E − 08", "3.29E − 08", "− 7.17439", "Down", "CD40 molecule"], ["IL22RA2", "− 0.6365", "4.34E − 08", "4.34E − 08", "− 7.07766", "Down", "Interleukin 22 receptor subunit alpha 2"], ["IL2", "− 0.64395", "4.65E − 08", "4.65E − 08", "− 7.05298", "Down", "Interleukin 2"], ["IL29", "− 0.64395", "4.65E − 08", "4.65E − 08", "− 7.05298", "Down", "Interleukin 29"], ["CD3E", "− 0.73018", "5.24E − 08", "5.24E − 08", "− 7.01159", "Down", "CD3e molecule"], ["CD55", "− 0.92114", "5.29E − 08", "5.29E − 08", "− 7.00828", "Down", "CD55 molecule (Cromer blood group)"], ["IL19", "− 0.6555", "5.33E − 08", "5.33E − 08", "− 7.00515", "Down", "Interleukin 19"], ["NOS2", "− 0.81432", "5.6E − 08", "5.6E − 08", "− 6.98829", "Down", "Nitric oxide synthase 2"], ["C4BPA", "− 1.83359", "5.78E − 08", "5.78E − 08", "− 6.97697", "Down", "Complement component 4 binding protein alpha"], ["CCL26", "− 0.57677", "6.5E − 08", "6.5E − 08", "− 6.93596", "Down", "C–C motif chemokine ligand 26"], ["CDH5", "− 0.60586", "7.09E − 08", "7.09E − 08", "− 6.90577", "Down", "Cadherin 5"], ["IL9", "− 0.60586", "7.09E − 08", "7.09E − 08", "− 6.90577", "Down", "Interleukin 9"], ["FCGRT", "− 0.75709", "8.18E − 08", "8.18E − 08", "− 6.85603", "Down", "Fc fragment of IgG receptor and transporter"], ["C8B", "− 0.6555", "1.1E − 07", "1.1E − 07", "− 6.75159", "Down", "Complement C8 beta chain"], ["IL5", "− 0.64086", "1.16E − 07", "1.16E − 07", "− 6.7344", "Down", "Interleukin 5"], ["PIGR", "− 0.66695", "1.33E − 07", "1.33E − 07", "− 6.68821", "Down", "Polymeric immunoglobulin receptor"], ["XCL1", "− 1.06423", "1.98E − 07", "1.98E − 07", "− 6.54928", "Down", "X-C motif chemokine ligand 1"], ["AIRE", "− 0.78032", "2.01E − 07", "2.01E − 07", "− 6.5441", "Down", "Autoimmune regulator"], ["IL3", "− 0.60723", "2.08E − 07", "2.08E − 07", "− 6.53283", "Down", "Interleukin 3"], ["CCL16", "− 0.6195", "2.31E − 07", "2.31E − 07", "− 6.4973", "Down", "C–C motif chemokine ligand 16"], ["CCL7", "− 0.6195", "2.31E − 07", "2.31E − 07", "− 6.4973", "Down", "C–C motif chemokine ligand 7"], ["CSF2", "− 0.6195", "2.31E − 07", "2.31E − 07", "− 6.4973", "Down", "Colony stimulating factor 2"], ["ITLN2", "− 0.6195", "2.31E − 07", "2.31E − 07", "− 6.4973", "Down", "Intelectin 2"], ["THY1", "− 0.6195", "2.31E − 07", "2.31E − 07", "− 6.4973", "Down", "Thy-1 cell surface antigen"], ["IL21", "− 0.70245", "3.28E − 07", "3.28E − 07", "− 6.37574", "Down", "Interleukin 21"], ["BCL2", "− 0.7385", "4.11E − 07", "4.11E − 07", "− 6.29854", "Down", "BCL2 apoptosis regulator"], ["EDNRB", "− 0.60541", "4.11E − 07", "4.11E − 07", "− 6.29833", "Down", "Endothelin receptor type B"], ["CCR6", "− 0.88205", "4.78E − 07", "4.78E − 07", "− 6.24666", "Down", "C–C motif chemokine receptor 6"], ["TIRAP", "− 0.70182", "5.91E − 07", "5.91E − 07", "− 6.17398", "Down", "TIR domain containing adaptor protein"], ["STAT6", "− 0.52186", "6.37E − 07", "6.37E − 07", "− 6.14848", "Down", "Signal transducer and activator of transcription 6"], ["PSMB10", "− 0.43945", "6.43E − 07", "6.43E − 07", "− 6.14519", "Down", "Proteasome 20S subunit beta 10"], ["SKI", "− 0.52182", "7.16E − 07", "7.16E − 07", "− 6.10886", "Down", "SKI proto-oncogene"], ["RAG2", "− 0.56723", "8.47E − 07", "8.47E − 07", "− 6.05149", "Down", "Recombination activating 2"], ["CD209", "− 0.7285", "8.56E − 07", "8.56E − 07", "− 6.04758", "Down", "CD209 molecule"], ["VTN", "− 0.68305", "9.43E − 07", "9.43E − 07", "− 6.01488", "Down", "Vitronectin"], ["IFNB1", "− 0.57768", "9.97E − 07", "9.97E − 07", "− 5.99573", "Down", "Interferon beta 1"], ["EOMES", "− 0.77505", "1.47E − 06", "1.47E − 06", "− 5.8643", "Down", "Eomesodermin"], ["CD74", "− 0.69905", "1.52E − 06", "1.52E − 06", "− 5.85145", "Down", "CD74 molecule"], ["CCR10", "− 0.60368", "1.7E − 06", "1.7E − 06", "− 5.81503", "Down", "C–C motif chemokine receptor 10"], ["LGALS3", "− 1.12309", "1.85E − 06", "1.85E − 06", "− 5.78563", "Down", "Galectin 3"], ["PDGFB", "− 0.64241", "1.86E − 06", "1.86E − 06", "− 5.78395", "Down", "Platelet derived growth factor subunit B"], ["ICAM4", "− 0.96814", "1.96E − 06", "1.96E − 06", "− 5.76557", "Down", "Intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)"], ["ICOSLG", "− 0.74791", "2.07E − 06", "2.07E − 06", "− 5.74698", "Down", "Inducible T cell costimulator ligand"], ["C9", "− 0.52132", "2.66E − 06", "2.66E − 06", "− 5.66169", "Down", "Complement C9"], ["IL16", "− 0.45973", "2.88E − 06", "2.88E − 06", "− 5.63467", "Down", "Interleukin 16"], ["RELA", "− 0.47205", "3.09E − 06", "3.09E − 06", "− 5.61097", "Down", "RELA proto-oncogene, NF-kB subunit"], ["DEFB1", "− 0.8105", "3.38E − 06", "3.38E − 06", "− 5.58051", "Down", "Defensin beta 1"], ["IL13RA1", "− 0.90159", "3.41E − 06", "3.41E − 06", "− 5.57755", "Down", "Interleukin 13 receptor subunit alpha 1"], ["HLA-DOB", "− 1.24595", "3.65E − 06", "3.65E − 06", "− 5.55493", "Down", "Major histocompatibility complex, class II, DO beta"], ["KIR3DL3", "− 0.56905", "3.78E − 06", "3.78E − 06", "− 5.54244", "Down", "Killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 3"], ["HLA-C", "− 0.93941", "3.97E − 06", "3.97E − 06", "− 5.52568", "Down", "Major histocompatibility complex, class I, C"], ["KLRB1", "− 1.79632", "5.31E − 06", "5.31E − 06", "− 5.42732", "Down", "Killer cell lectin like receptor B1"], ["HLA-DMB", "− 0.85005", "5.86E − 06", "5.86E − 06", "− 5.39367", "Down", "Major histocompatibility complex, class II, DM beta"], ["KLRF2", "− 0.53859", "6E − 06", "6E − 06", "− 5.3857", "Down", "Killer cell lectin like receptor F2"], ["ICAM3", "− 0.66718", "6.38E − 06", "6.38E − 06", "− 5.36481", "Down", "Intercellular adhesion molecule 3"], ["IL28A", "− 0.55718", "7.03E − 06", "7.03E − 06", "− 5.33194", "Down", "Interleukin 28A"], ["SIGIRR", "− 0.41545", "7.52E − 06", "7.52E − 06", "− 5.30925", "Down", "Single Ig and TIR domain containing"], ["MASP2", "− 0.68927", "7.93E − 06", "7.93E − 06", "− 5.29109", "Down", "Mannan binding lectin serine peptidase 2"], ["CSF2RB", "− 1.12332", "8.36E − 06", "8.36E − 06", "− 5.27318", "Down", "Colony stimulating factor 2 receptor beta common subunit"], ["CD46", "− 0.59905", "9.11E − 06", "9.11E − 06", "− 5.24408", "Down", "CD46 molecule"], ["S1PR1", "− 0.60436", "9.23E − 06", "9.23E − 06", "− 5.23966", "Down", "Sphingosine − 1-phosphate receptor 1"], ["TLR9", "− 0.56841", "1.05E − 05", "1.05E − 05", "− 5.19438", "Down", "Toll like receptor 9"], ["HLA-DPB1", "− 0.70064", "1.07E − 05", "1.07E − 05", "− 5.19046", "Down", "Major histocompatibility complex, class II, DP beta 1"], ["CCL13", "− 0.57018", "1.16E − 05", "1.16E − 05", "− 5.16161", "Down", "C–C motif chemokine ligand 13"], ["PLA2G2E", "− 0.67155", "1.19E − 05", "1.19E − 05", "-5.15362", "Down", "Phospholipase A2 group IIE"], ["IL20", "− 0.67032", "1.29E − 05", "1.29E − 05", "-5.12687", "Down", "Interleukin 20"], ["PTAFR", "− 0.91373", "1.37E − 05", "1.37E − 05", "-5.10671", "Down", "Platelet activating factor receptor"], ["TGFBI", "− 0.59209", "1.44E − 05", "1.44E − 05", "-5.08943", "Down", "Transforming growth factor beta induced"], ["IL26", "− 0.50514", "1.52E − 05", "1.52E − 05", "-5.07029", "Down", "Interleukin 26"], ["IFNAR1", "− 0.78755", "2.03E − 05", "2.03E − 05", "− 4.97214", "Down", "Interferon alpha and beta receptor subunit 1"], ["LTA", "− 0.56282", "2.17E − 05", "2.17E − 05", "− 4.94915", "Down", "Lymphotoxin alpha"], ["FCGR2B", "− 0.85355", "2.4E − 05", "2.4E − 05", "− 4.91443", "Down", "Fc fragment of IgG receptor IIb"], ["EGR1", "− 0.63082", "2.41E − 05", "2.41E − 05", "− 4.9133", "Down", "Early growth response 1"], ["CD86", "− 0.76691", "2.54E − 05", "2.54E − 05", "− 4.89525", "Down", "CD86 molecule"], ["CD82", "− 0.99568", "2.76E − 05", "2.76E − 05", "− 4.86674", "Down", "CD82 molecule"], ["CD34", "− 0.56045", "2.79E − 05", "2.79E − 05", "− 4.86293", "Down", "CD34 molecule"], ["TRAF3", "− 0.46214", "2.87E − 05", "2.87E − 05", "− 4.85429", "Down", "TNF receptor associated factor 3"], ["CTLA4", "− 0.53577", "3E − 05", "3E − 05", "− 4.83886", "Down", "Cytotoxic T-Lymphocyte Associated Protein 4"], ["HAMP", "− 0.61205", "3E − 05", "3E − 05", "− 4.83856", "Down", "Hepcidin antimicrobial peptide"], ["EGR2", "− 0.78873", "3.15E − 05", "3.15E − 05", "− 4.82228", "Down", "Early growth response 2"], ["ICAM5", "− 0.53214", "3.22E − 05", "3.22E − 05", "− 4.81493", "Down", "Intercellular adhesion molecule 5"], ["CSF1R", "− 0.70273", "3.45E − 05", "3.45E − 05", "− 4.79056", "Down", "Colony stimulating factor 1 receptor"], ["NT5E", "− 0.85836", "3.68E − 05", "3.68E − 05", "− 4.76884", "Down", "5′-nucleotidase ecto"], ["IL7", "− 0.74464", "4.3E − 05", "4.3E − 05", "− 4.71548", "Down", "Interleukin 7"], ["CTSS", "− 0.62991", "4.34E − 05", "4.34E − 05", "− 4.71277", "Down", "Cathepsin S"], ["IL17B", "− 0.55268", "4.82E − 05", "4.82E − 05", "− 4.6769", "Down", "Interleukin 17B"], ["CR2", "− 1.00786", "4.86E − 05", "4.86E − 05", "− 4.67369", "Down", "Complement C3d receptor 2"], ["CD44", "− 0.35164", "5.25E − 05", "5.25E − 05", "− 4.64701", "Down", "CD44 molecule (Indian blood group)"], ["PLA2G2A", "− 0.53655", "5.77E − 05", "5.77E − 05", "− 4.61492", "Down", "Phospholipase A2 group IIA"], ["BTK", "− 0.45495", "5.87E − 05", "5.87E − 05", "− 4.60896", "Down", "Bruton tyrosine kinase"], ["C6", "− 0.65964", "5.95E − 05", "5.95E − 05", "− 4.60439", "Down", "Complement C6"], ["IRGM", "− 0.62291", "6.21E − 05", "6.21E − 05", "− 4.58953", "Down", "Immunity related GTPase M"], ["IL22", "− 0.65314", "7.15E − 05", "7.15E − 05", "− 4.54121", "Down", "Interleukin 22"], ["CEBPB", "− 0.88709", "7.69E − 05", "7.69E − 05", "− 4.51625", "Down", "CCAAT enhancer binding protein beta"], ["IL6", "− 0.69105", "7.91E − 05", "7.91E − 05", "− 4.50639", "Down", "Interleukin 6"], ["IFNA2", "− 0.77586", "8.23E − 05", "8.23E − 05", "− 4.49296", "Down", "Interferon alpha 2"], ["TGFBR1", "− 0.40336", "8.66E − 05", "8.66E − 05", "− 4.47511", "Down", "Transforming growth factor beta receptor 1"], ["IL17F", "− 0.54009", "8.83E − 05", "8.83E − 05", "− 4.4686", "Down", "Interleukin 17F"], ["IL28A/B", "− 0.55282", "0.000163", "0.000163", "− 4.25674", "Down", "Interleukin 28A/B"], ["IL17A", "− 0.53723", "0.00018", "0.00018", "− 4.22236", "Down", "Interleukin 17A"], ["LILRA2", "− 0.68495", "0.000195", "0.000195", "− 4.194", "Down", "Leukocyte immunoglobulin like receptor A2"], ["LILRA3", "− 2.33691", "0.000203", "0.000203", "− 4.18055", "Down", "Leukocyte immunoglobulin like receptor A3"], ["VCAM1", "− 0.60605", "0.000219", "0.000219", "− 4.15259", "Down", "Vascular cell adhesion molecule 1"], ["SPP1", "− 0.6555", "0.000221", "0.000221", "− 4.1496", "Down", "Secreted phosphoprotein 1"], ["CARD9", "− 0.55227", "0.000269", "0.000269", "− 4.0818", "Down", "Caspase recruitment domain family member 9"], ["LCK", "− 0.40364", "0.000299", "0.000299", "− 4.04398", "Down", "LCK proto-oncogene, Src family tyrosine kinase"], ["SELE", "− 0.52332", "0.000306", "0.000306", "− 4.03551", "Down", "selectin E"], ["SLC2A1", "− 0.44118", "0.00036", "0.00036", "− 3.97865", "Down", "solute carrier family 2 member 1"], ["LIF", "− 0.50555", "0.000368", "0.000368", "− 3.97037", "Down", "LIF interleukin 6 family cytokine"], ["IDO1", "− 0.95541", "0.000417", "0.000417", "− 3.92685", "Down", "Indoleamine 2,3-dioxygenase 1"], ["TNFRSF10C", "− 0.88564", "0.000471", "0.000471", "− 3.88294", "Down", "TNF receptor superfamily member 10c"], ["IL23A", "− 0.87541", "0.000557", "0.000557", "− 3.82374", "Down", "interleukin 23 subunit alpha"], ["CD80", "− 0.58964", "0.000567", "0.000567", "− 3.81702", "Down", "CD80 molecule"], ["GPR183", "− 1.088", "0.00057", "0.00057", "− 3.81527", "Down", "G protein-coupled receptor 183"], ["C1R", "− 0.41727", "0.000592", "0.000592", "− 3.8018", "Down", "Complement C1r"], ["CCL11", "− 0.55055", "0.000611", "0.000611", "− 3.79064", "Down", "C–C motif chemokine ligand 11"], ["HLA-DPA1", "− 0.6385", "0.000637", "0.000637", "− 3.77577", "Down", "major histocompatibility complex, class II, DP alpha 1"], ["IFNG", "− 0.877", "0.00073", "0.00073", "− 3.72658", "Down", "Interferon gamma"], ["DUSP4", "− 0.70741", "0.000789", "0.000789", "− 3.69861", "Down", "Dual specificity phosphatase 4"], ["IL27", "− 0.44905", "0.000852", "0.000852", "− 3.67089", "Down", "Interleukin 27"], ["CD48", "− 1.15805", "0.000953", "0.000953", "− 3.6304", "Down", "CD48 molecule"], ["FN1", "− 0.56177", "0.001005", "0.001005", "− 3.61111", "Down", "fibronectin 1"], ["CD244", "− 0.39427", "0.001018", "0.001018", "− 3.60646", "Down", "CD244 molecule"], ["PPBP", "− 1.35464", "0.001091", "0.001091", "− 3.58105", "Down", "pro-platelet basic protein"], ["IL13", "− 0.599", "0.001204", "0.001204", "− 3.54515", "Down", "interleukin 13"], ["CCL24", "− 0.45395", "0.001221", "0.001221", "− 3.53987", "Down", "C–C motif chemokine ligand 24"], ["GATA3", "− 0.55041", "0.001228", "0.001228", "− 3.53797", "Down", "GATA binding protein 3"], ["BID", "− 0.46636", "0.001281", "0.001281", "− 3.52243", "Down", "BH3 interacting domain death agonist"], ["BCL2L11", "− 0.40091", "0.001565", "0.001565", "− 3.44881", "Down", "BCL2 like 11"], ["KIT", "− 0.52868", "0.001589", "0.001589", "− 3.44316", "Down", "KIT proto-oncogene, receptor tyrosine kinase"], ["MME", "− 1.00591", "0.001596", "0.001596", "− 3.44151", "Down", "Membrane metalloendopeptidase"], ["ZEB1", "− 0.38082", "0.001667", "0.001667", "− 3.42548", "Down", "Zinc finger E-box binding homeobox 1"], ["C4A/B", "− 0.62314", "0.001738", "0.001738", "− 3.40994", "Down", "Complement C4A/B"], ["FCAR", "− 0.50423", "0.00198", "0.00198", "− 3.36169", "Down", "Fc fragment of IgA receptor"], ["BTLA", "− 0.45623", "0.002033", "0.002033", "− 3.35183", "Down", "B and T lymphocyte associated"], ["TAGAP", "− 0.38886", "0.002261", "0.002261", "− 3.31206", "Down", "T cell activation RhoGTPase activating protein"], ["CD83", "− 0.39914", "0.002292", "0.002292", "− 3.307", "Down", "CD83 molecule"], ["SELPLG", "− 0.37564", "0.002362", "0.002362", "-3.29575", "Down", "Selectin P ligand"], ["B3GAT1", "− 0.66791", "0.002423", "0.002423", "− 3.28614", "Down", "Beta-1,3-glucuronyltransferase 1"], ["CCRL1", "− 0.39195", "0.002543", "0.002543", "− 3.26788", "Down", "C–C chemokine receptor type 11"], ["TNFRSF14", "− 0.29986", "0.002557", "0.002557", "− 3.26588", "Down", "TNF receptor superfamily member 14"], ["CSF3R", "− 0.65318", "0.003003", "0.003003", "− 3.20507", "Down", "Colony stimulating factor 3 receptor"], ["CD9", "− 0.87091", "0.003004", "0.003004", "− 3.20497", "Down", "CD9 molecule"], ["C1S", "− 0.52059", "0.003211", "0.003211", "− 3.17969", "Down", "complement C1s"], ["PECAM1", "− 0.30873", "0.003251", "0.003251", "− 3.17496", "Down", "platelet and endothelial cell adhesion molecule 1"], ["DEFB103B", "− 0.4315", "0.003466", "0.003466", "− 3.15055", "Down", "Defensin beta 103B"], ["ITLN1", "− 1.17682", "0.003488", "0.003488", "− 3.14815", "Down", "Intelectin 1"], ["CXCL13", "− 0.46586", "0.003554", "0.003554", "− 3.14101", "Down", "C-X-C motif chemokine ligand 13"], ["RAG1", "− 0.47836", "0.003917", "0.003917", "− 3.10376", "Down", "Recombination activating 1"], ["TNFRSF4", "− 0.55123", "0.004154", "0.004154", "− 3.08112", "Down", "TNF receptor superfamily member 4"], ["C14orf166", "− 0.35727", "0.004255", "0.004255", "− 3.07189", "Down", "Chromosome 14 open reading frame 166"], ["IL10RA", "− 0.26059", "0.004423", "0.004423", "− 3.0569", "Down", "Interleukin 10 receptor subunit alpha"], ["POU2F2", "− 0.292", "0.004614", "0.004614", "− 3.04059", "Down", "POU class 2 homeobox 2"], ["C7", "− 0.41223", "0.004688", "0.004688", "− 3.03441", "Down", "complement C7"], ["RORC", "− 0.52768", "0.005006", "0.005006", "− 3.00891", "Down", "RAR related orphan receptor C"], ["CXCL11", "− 0.83891", "0.005151", "0.005151", "− 2.99784", "Down", "C-X-C motif chemokine ligand 11"], ["MASP1", "− 0.50677", "0.005182", "0.005182", "− 2.99543", "Down", "Mannan binding lectin serine peptidase 1"], ["MAP4K4", "− 0.37777", "0.005449", "0.005449", "− 2.97583", "Down", "Mitogen-activated protein kinase kinasekinasekinase 4"], ["CX3CL1", "− 0.50445", "0.005597", "0.005597", "− 2.96535", "Down", "C-X3-C motif chemokine ligand 1"], ["BATF3", "− 0.62586", "0.005862", "0.005862", "− 2.94725", "Down", "Basic leucine zipper ATF-like transcription factor 3"], ["CCR8", "− 0.51627", "0.005946", "0.005946", "− 2.94164", "Down", "C–C motif chemokine receptor 8"], ["TAL1", "− 1.01455", "0.006016", "0.006016", "− 2.93707", "Down", "TAL bHLH transcription factor 1, erythroid differentiation factor"], ["NFIL3", "− 0.723", "0.007", "0.007", "− 2.87725", "Down", "Nuclear factor, interleukin 3 regulated"], ["CD8A", "− 0.50595", "0.007337", "0.007337", "− 2.85858", "Down", "CD8a molecule"], ["CLEC6A", "− 0.62323", "0.007445", "0.007445", "− 2.85274", "Down", "C-type lectin domain containing 6A"], ["TCF4", "− 0.37827", "0.007904", "0.007904", "− 2.8289", "Down", "Transcription factor 4"], ["FCGR2A", "− 0.664", "0.009089", "0.009089", "− 2.77283", "Down", "Fc fragment of IgG receptor IIa"], ["HLA-B", "− 0.31677", "0.00918", "0.00918", "− 2.76877", "Down", "major histocompatibility complex, class I, B"], ["IRF8", "− 0.39477", "0.009346", "0.009346", "− 2.76157", "Down", "Interferon regulatory factor 8"], ["MAPK11", "− 0.60427", "0.010152", "0.010152", "− 2.72804", "Down", "Mitogen-activated protein kinase 11"], ["ILF3", "− 0.17055", "0.010366", "0.010366", "− 2.71958", "Down", "Interleukin enhancer binding factor 3"], ["XCR1", "− 0.34541", "0.01065", "0.01065", "− 2.70856", "Down", "X–C motif chemokine receptor 1"], ["ITGAE", "− 0.33509", "0.011424", "0.011424", "− 2.67988", "Down", "Integrin subunit alpha E"], ["IL4R", "− 0.69064", "0.012538", "0.012538", "− 2.64162", "Down", "Interleukin 4 receptor"], ["CTSC", "− 0.16718", "0.012619", "0.012619", "− 2.63897", "Down", "Cathepsin C"], ["ETS1", "− 0.39405", "0.013255", "0.013255", "− 2.61865", "Down", "ETS proto-oncogene 1, transcription factor"], ["CFI", "− 0.30082", "0.013335", "0.013335", "− 2.61614", "Down", "Complement factor I"], ["STAT5A", "− 0.27168", "0.014802", "0.014802", "− 2.57273", "Down", "Signal transducer and activator of transcription 5A"], ["C8A", "− 0.37964", "0.016204", "0.016204", "− 2.53478", "Down", "Complement C8 alpha chain"], ["DEFB4A", "− 0.36691", "0.017835", "0.017835", "− 2.49428", "Down", "Defensin beta 4A"], ["RELB", "− 0.45095", "0.019351", "0.019351", "− 2.45958", "Down", "RELB proto-oncogene, NF-kB subunit"], ["ATG7", "− 0.32859", "0.01984", "0.01984", "− 2.4489", "Down", "Autophagy related 7"], ["DPP4", "− 0.38823", "0.01999", "0.01999", "− 2.44568", "Down", "Dipeptidyl peptidase 4"], ["GPI", "− 0.21382", "0.020424", "0.020424", "− 2.43646", "Down", "Glucose-6-phosphate isomerase"], ["CD59", "− 0.24032", "0.020561", "0.020561", "− 2.43359", "Down", "CD59 molecule (CD59 blood group)"], ["CASP3", "− 0.40573", "0.025629", "0.025629", "− 2.33807", "Down", "Caspase 3"], ["TIGIT", "− 0.3615", "0.025963", "0.025963", "− 2.33239", "Down", "T cell immunoreceptor with Ig and ITIM domains"], ["CFD", "− 0.36627", "0.026073", "0.026073", "− 2.33053", "Down", "Complement factor D"], ["CCL18", "− 0.42077", "0.026944", "0.026944", "− 2.3161", "Down", "C–C motif chemokine ligand 18"], ["PLAU", "− 0.34086", "0.028132", "0.028132", "− 2.29706", "Down", "Plasminogen activator, urokinase"], ["PTPN22", "− 0.20086", "0.028829", "0.028829", "− 2.28623", "Down", "Protein tyrosine phosphatase non-receptor type 22"], ["TOLLIP", "− 0.27377", "0.028911", "0.028911", "− 2.28497", "Down", "Toll interacting protein"], ["CXCR2", "− 0.49195", "0.029438", "0.029438", "− 2.27696", "Down", "C-X-C motif chemokine receptor 2"], ["CCL20", "− 0.34555", "0.029871", "0.029871", "− 2.27048", "Down", "C–C motif chemokine ligand 20"], ["IL12A", "− 0.40759", "0.03046", "0.03046", "− 2.26179", "Down", "Interleukin 12A"], ["IL10", "− 0.33555", "0.03205", "0.03205", "− 2.23904", "Down", "Interleukin 10"], ["LILRA1", "− 0.26991", "0.033542", "0.033542", "− 2.21862", "Down", "leukocyte immunoglobulin like receptor A1"], ["PTPN6", "− 0.16109", "0.034722", "0.034722", "− 2.20304", "Down", "protein tyrosine phosphatase non-receptor type 6"], ["CCL19", "− 0.37718", "0.035605", "0.035605", "− 2.19168", "Down", "C–C motif chemokine ligand 19"], ["IKBKAP", "− 0.15505", "0.035624", "0.035624", "− 2.19144", "Down", "IκB kinase complex-associated protein"], ["TNFRSF9", "− 0.50786", "0.036235", "0.036235", "− 2.18372", "Down", "TNF receptor superfamily member 9"], ["TCF7", "− 0.60091", "0.036564", "0.036564", "− 2.17963", "Down", "Transcription factor 7"], ["HLA-DMA", "− 0.30777", "0.036925", "0.036925", "− 2.17516", "Down", "Major histocompatibility complex, class II, DM alpha"], ["CXCL12", "− 0.69291", "0.037168", "0.037168", "− 2.17218", "Down", "C-X-C motif chemokine ligand 12"], ["MBL2", "− 0.37009", "0.037623", "0.037623", "− 2.16664", "Down", "Mannose binding lectin 2"], ["IKZF2", "− 0.46655", "0.039489", "0.039489", "− 2.14452", "Down", "IKAROS family zinc finger 2"], ["BCAP31", "− 0.10632", "0.04075", "0.04075", "− 2.13009", "Down", "B cell receptor associated protein 31"], ["HLA-DRB1", "− 1.39495", "0.041403", "0.041403", "− 2.12278", "Down", "Major histocompatibility complex, class II, DR beta 1"], ["IRAK4", "− 0.23727", "0.041428", "0.041428", "− 2.12251", "Down", "Interleukin 1 receptor associated kinase 4"], ["CXCR1", "− 0.49741", "0.041833", "0.041833", "− 2.11802", "Down", "C-X-C motif chemokine receptor 1"], ["PTK2", "− 0.33609", "0.043242", "0.043242", "− 2.10272", "Down", "Protein tyrosine kinase 2"], ["CD45R0", "− 0.46514", "0.043373", "0.043373", "− 2.10132", "Down", "A member of leucocyte common antigen family"]], "row_count": 325, "column_count": 7, "numeric_cells": 1605, "header_rows": 1, "locator": "section[12]/table-wrap[1]#Tab1"}}, {"id": "asset:table:pmid:33251083:2", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:b7239eaa56eb9da9deefd70f1c000d77539072c6a251173f715314d5547a318e", "bytes": 10374, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[13]/table-wrap[1]#Tab2", "version": null, "note": "The enriched pathway terms of the up regulated differentially expressed genes", "structure": {"pmcid": "PMC7679428", "section_index": 5, "section_title": "Pathway enrichment analysis for DEGs", "row_count": 73, "column_count": 8}, "table": {"label": "Table 2", "caption": "The enriched pathway terms of the up regulated differentially expressed genes", "rows": [["KEGG"], ["Pathway ID", "Pathway Name", "P-value", "FDR B&H", "FDR B&Y", "Bonferroni", "Gene Count", "Gene"], ["213306", "Measles", "3.21E − 17", "4.46E − 15", "2.46E − 14", "4.46E − 15", "16", "CCND3, JAK1, JAK2, IFIH1, TRAF6, IKBKE, TLR2, IRF7, FYN, IL2RG, STAT1, TP53, STAT3, MX1, STAT5B, IFNAR2"], ["377873", "Herpes simplex infection", "1.19E − 13", "8.24E − 12", "4.54E − 11", "1.65E − 11", "15", "JAK1, JAK2, IFIH1, TRAF2, TRAF6, HLA-A, IKBKE, TLR2, C1QBP, CCL5, IRF7, IKBKB, STAT1, TP53, IFNAR2"], ["83079", "Natural killer cell mediated cytotoxicity", "5.40E − 13", "2.50E − 11", "1.38E − 10", "7.51E − 11", "13", "KLRK1, CD247, HLA-A, GZMB, HRAS, LCP2, ITGAL, FYN, ITGB2, KLRC1, ZAP70, KLRD1, IFNAR2"], ["193147", "Osteoclast differentiation", "1.85E − 10", "3.32E − 09", "1.83E − 08", "2.57E − 08", "11", "JAK1, TRAF2, TRAF6, LILRB2, LILRA6, SOCS1, IKBKB, LCP2, FYN, STAT1, IFNAR2"], ["83077", "Jak-STAT signaling pathway", "1.31E − 09", "1.83E − 08", "1.01E − 07", "1.83E − 07", "11", "CCND3, JAK1, JAK2, HRAS, SOCS1, IL2RG, STAT1, STAT3, STAT4, STAT5B, IFNAR2"], ["217173", "Influenza A", "3.94E − 09", "4.56E − 08", "2.51E − 07", "5.47E − 07", "11", "JAK1, JAK2, IFIH1, IKBKE, CCL5, IRF7, IKBKB, STAT1, NLRP3, MX1, IFNAR2"], ["373901", "HTLV-I infection", "2.27E − 08", "2.11E − 07", "1.16E − 06", "3.16E − 06", "12", "CCND3, JAK1, HLA-A, HRAS, XBP1, CTNNB1, IKBKB, ITGAL, ITGB2, IL2RG, TP53, STAT5B"], ["658418", "Viral carcinogenesis", "2.16E − 07", "1.67E − 06", "9.20E − 06", "3.00E − 05", "10", "CCND3, JAK1, TRAF2, HLA-A, HRAS, IRF7, CCR5, TP53, STAT3, STAT5B"], ["83080", "T cell receptor signaling pathway", "2.05E − 06", "1.36E − 05", "7.47E − 05", "2.85E − 04", "7", "PDCD1, CD247, HRAS, IKBKB, LCP2, FYN, ZAP70"], ["125138", "Viral myocarditis", "2.21E − 05", "1.18E − 04", "6.51E − 04", "3.07E − 03", "5", "ABL1, HLA-A, ITGAL, FYN, ITGB2"], ["213780", "Tuberculosis", "7.57E − 05", "3.63E − 04", "2.00E − 03", "1.05E − 02", "7", "JAK1, JAK2, TRAF6, TLR2, CLEC7A, ITGB2, STAT1"], ["83051", "Cytokine-cytokine receptor interaction", "1.59E − 04", "6.69E − 04", "3.69E − 03", "2.21E − 02", "8", "CCR1, CCL5, CCR5, IL18RAP, IL2RG, IL18R1, CX3CR1, IFNAR2"], ["152665", "Malaria", "1.79E − 04", "7.32E − 04", "4.04E − 03", "2.49E − 02", "4", "KLRK1, TLR2, ITGAL, ITGB2"], ["Pathway interaction database"], ["137922", "IL12-mediated signaling events", "1.37E − 17", "1.56E − 15", "8.29E − 15", "1.56E − 15", "13", "JAK2, CD247, HLA-A, TBX21, GZMB, SOCS1, CCR5, IL18RAP, IL2RG, IL18R1, STAT1, STAT3, STAT4"], ["137976", "IL2-mediated signaling events", "5.15E − 10", "2.94E − 08", "1.56E − 07", "5.88E − 08", "8", "JAK1, IKZF3, SOCS1, FYN, IL2RG, STAT1, STAT3, STAT5B"], ["138055", "TCR signaling in naive CD8 + T cells", "9.79E − 09", "2.35E − 07", "1.25E − 06", "1.12E − 06", "7", "TRAF6, CD247, HLA-A, IKBKB, LCP2, FYN, ZAP70"], ["138071", "PDGFR-beta signaling pathway", "6.28E − 07", "7.16E − 06", "3.81E − 05", "7.16E − 05", "6", "ABL1, HRAS, FYN, STAT1, STAT3, STAT5B"], ["137988", "IL2 signaling events mediated by STAT5", "2.52E − 05", "2.21E − 04", "1.17E − 03", "2.87E − 03", "4", "CCND3, JAK1, IL2RG, STAT5B"], ["138019", "p75(NTR)-mediated signaling", "5.25E − 03", "2.32E − 02", "1.23E − 01", "5.99E − 01", "3", "TRAF6, IKBKB, TP53"], ["138021", "Paxillin-dependent events mediated by a4b1", "5.29E − 03", "2.32E − 02", "1.23E − 01", "6.03E − 01", "2", "ITGAL, ITGB2"], ["137940", "Signaling events mediated by VEGFR1 and VEGFR2", "5.75E − 03", "2.43E − 02", "1.29E − 01", "6.55E − 01", "3", "HRAS, CTNNB1, FYN"], ["137983", "ALK2 signaling events", "6.18E − 02", "1.22E − 01", "6.47E − 01", "1.00E + 00", "1", "SMAD5"], ["138046", "Syndecan-1-mediated signaling events", "9.40E − 02", "1.70E − 01", "9.04E − 01", "1.00E + 00", "1", "CCL5"], ["REACTOME"], ["1269310", "Cytokine Signaling in Immune system", "3.94E − 16", "2.05E − 13", "1.40E − 12", "2.05E − 13", "28", "JAK1, JAK2, TRAF2, TRAF6, HLA-A, BST2, HRAS, PSMB9, GBP1, SOCS1, CCR1, IRF5, CCL5, IRF7, CCR5, IKBKB, FYN, IFI35, IL18RAP, ITGB2, IL2RG, IL18R1, STAT1, TP53, STAT3, MX1, STAT5B, IFNAR2"], ["1269203", "Innate Immune System", "1.61E − 13", "4.19E − 11", "2.86E − 10", "8.38E − 11", "32", "KLRK1, ATG5, JAK1, JAK2, IFIH1, TRAF2, TRAF6, CD247, ABL1, HLA-A, IKBKE, BST2, LILRB2, TLR2, HRAS, PSMB9, CLEC7A, SOCS1, C2, IRF7, GNLY, CTNNB1, IKBKB, LCP2, ITGAL, FYN, ITGB2, IL2RG, KLRD1, TP53, NLRP3, CEACAM1"], ["1269318", "Signaling by Interleukins", "9.69E − 11", "1.06E − 08", "7.24E − 08", "5.04E − 08", "19", "JAK1, JAK2, TRAF6, HRAS, PSMB9, SOCS1, CCR1, CCL5, CCR5, IKBKB, FYN, IL18RAP, ITGB2, IL2RG, IL18R1, STAT1, TP53, STAT3, STAT5B"], ["1269171", "Adaptive Immune System", "1.02E − 10", "1.06E − 08", "7.24E − 08", "5.30E − 08", "23", "KLRK1, PDCD1, TRAF6, CD247, ZBTB16, HLA-A, LILRB2, TLR2, LAG3, HRAS, LILRA6, PSMB9, SOCS1, SLAMF7, IKBKB, LCP2, ITGAL, FYN, ITGB2, KLRC1, ZAP70, KLRD1, TP53"], ["1269340", "Hemostasis", "5.49E − 07", "2.20E − 05", "1.50E − 04", "2.86E − 04", "16", "JAK1, JAK2, ABL1, CD99, HRAS, C1QBP, SERPING1, IRF7, LCP2, ITGAL, FYN, ITGB2, IL2RG, TP53, CEACAM1, GP1BB"], ["1269260", "TRAF3-dependent IRF activation pathway", "9.84E − 05", "1.55E − 03", "1.06E − 02", "5.12E − 02", "3", "IFIH1, IKBKE, IRF7"], ["1268854", "Disease", "1.26E − 03", "1.24E − 02", "8.44E − 02", "6.55E − 01", "13", "JAK2, CD247, HLA-A, TLR2, HRAS, PSMB9, CCR5, CTNNB1, IKBKB, FYN, STAT1, STAT3, STAT5B"], ["1268855", "Diseases of signal transduction", "1.35E − 03", "1.30E − 02", "8.90E − 02", "7.03E − 01", "8", "JAK2, HRAS, PSMB9, CTNNB1, FYN, STAT1, STAT3, STAT5B"], ["1269562", "Leukotriene receptors", "2.86E − 02", "8.96E − 02", "6.12E − 01", "1.00E + 00", "1", "LTB4R"], ["1269248", "Activation of C3 and C5", "3.98E − 02", "1.18E − 01", "8.08E − 01", "1.00E + 00", "1", "C2"], ["MSigDB C2 BIOCARTA (v6.0)"], ["M8066", "IL22 Soluble Receptor Signaling Pathway", "2.31E − 10", "3.56E − 08", "2.00E − 07", "3.56E − 08", "6", "JAK1, JAK2, STAT1, STAT3, STAT4, STAT5B"], ["M13494", "Bioactive Peptide Induced Signaling Pathway", "4.38E − 09", "3.38E − 07", "1.90E − 06", "6.75E − 07", "7", "JAK2, HRAS, FYN, STAT1, STAT3, STAT4, STAT5B"], ["M1462", "CTL mediated immune response against target cells", "1.61E − 08", "7.50E − 07", "4.21E − 06", "2.48E − 06", "5", "CD247, HLA-A, GZMB, ITGAL, ITGB2"], ["M6231", "NO2-dependent IL 12 Pathway in NK cells", "2.31E − 06", "3.24E − 05", "1.82E − 04", "3.56E − 04", "4", "JAK2, CD247, CCR5, STAT4"], ["M13863", "MAPKinaseSignaling Pathway", "1.06E − 05", "1.08E − 04", "6.09E − 04", "1.63E − 03", "6", "TRAF2, MAP4K1, HRAS, IKBKB, MAP4K2, STAT1"], ["M6427", "T Helper Cell Surface Molecules", "6.45E − 05", "4.73E − 04", "2.66E − 03", "9.93E − 03", "3", "CD247, ITGAL, ITGB2"], ["M4047", "Selective expression of chemokine receptors during T-cell polarization", "6.08E − 04", "3.12E − 03", "1.75E − 02", "9.37E − 02", "3", "CCR1, CCR5, IL18R1"], ["M11358", "Tumor Suppressor Arf Inhibits Ribosomal Biogenesis", "4.24E − 03", "1.28E − 02", "7.19E − 02", "6.53E − 01", "2", "ABL1, TP53"], ["M17400", "ALK in cardiac myocytes", "1.93E − 02", "4.37E − 02", "2.45E − 01", "1.00E + 00", "2", "CTNNB1, SMAD5"], ["M5885", "Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors", "8.19E − 01", "8.30E − 01", "1.00E + 00", "1.00E + 00", "3", "CLEC7A, SERPING1, CCL5"], ["Panther DB"], ["P00038", "JAK/STAT signaling pathway", "1.76E − 12", "5.64E − 11", "2.29E − 10", "5.64E − 11", "7", "JAK1, JAK2, SOCS1, STAT1, STAT3, STAT4, STAT5B"], ["P00031", "Inflammation mediated by chemokine and cytokine signaling pathway", "1.44E − 06", "2.31E − 05", "9.37E − 05", "4.62E − 05", "9", "JAK2, CCRL2, CCR1, CCL5, CCR5, IKBKB, ITGAL, CX3CR1, STAT3"], ["P00054", "Toll receptor signaling pathway", "1.94E − 04", "1.03E − 03", "4.19E − 03", "6.20E − 03", "4", "TRAF6, IKBKE, TLR2, IKBKB"], ["P00006", "Apoptosis signaling pathway", "3.03E − 04", "1.39E − 03", "5.62E − 03", "9.69E − 03", "5", "TRAF2, GZMB, IKBKB, MAP4K2, TP53"], ["P00010", "B cell activation", "4.43E − 02", "9.45E − 02", "3.83E − 01", "1.00E + 00", "2", "HRAS, IKBKB"], ["P00052", "TGF-beta signaling pathway", "9.73E − 02", "1.67E − 01", "6.78E − 01", "1.00E + 00", "2", "HRAS, SMAD5"], ["P00011", "Blood coagulation", "2.07E − 01", "2.89E − 01", "1.00E + 00", "1.00E + 00", "1", "GP1BB"], ["P00012", "Cadherin signaling pathway", "2.34E − 01", "3.00E − 01", "1.00E + 00", "1.00E + 00", "2", "CTNNB1, FYN"], ["P00057", "Wntsignaling pathway", "2.59E − 01", "3.07E − 01", "1.00E + 00", "1.00E + 00", "3", "CTNNB1, TP53, SMAD5"], ["P00056", "VEGF signaling pathway", "2.86E − 01", "3.27E − 01", "1.00E + 00", "1.00E + 00", "1", "HRAS"], ["Pathway Ontology"], ["PW:0000125", "G protein signaling", "5.82E − 03", "3.10E − 02", "1.26E − 01", "1.86E − 01", "1", "LTB4R"], ["PW:0000297", "platelet-derived growth factor signaling", "5.82E − 03", "3.10E − 02", "1.26E − 01", "1.86E − 01", "1", "JAK2"], ["PW:0000143", "insulin signaling", "1.05E − 02", "3.36E − 02", "1.36E − 01", "3.37E − 01", "2", "SOCS1, STAT5B"], ["PW:0000330", "Bone morphogenetic proteins signaling", "2.86E − 02", "6.53E − 02", "2.65E − 01", "9.15E − 01", "1", "SMAD5"], ["PW:0000599", "altered canonical Wntsignaling", "2.86E − 02", "6.53E − 02", "2.65E − 01", "9.15E − 01", "1", "CTNNB1"], ["PW:0000508", "platelet aggregation", "3.42E − 02", "6.84E − 02", "2.78E − 01", "1.00E + 00", "1", "GP1BB"], ["PW:0000234", "innate immune response", "6.18E − 02", "1.10E − 01", "4.46E − 01", "1.00E + 00", "1", "TLR2"], ["PW:0000278", "autophagy", "1.04E − 01", "1.39E − 01", "5.65E − 01", "1.00E + 00", "1", "ATG10"], ["PW:0000243", "vascular endothelial growth factor signaling", "1.30E − 01", "1.49E − 01", "6.03E − 01", "1.00E + 00", "1", "FYN"], ["PW:0000490", "transforming growth factor-beta Smad dependent signaling", "1.40E − 01", "1.55E − 01", "6.28E − 01", "1.00E + 00", "1", "RUNX1"], ["SMPDB"], ["SMP00320", "Intracellular Signalling Through Adenosine Receptor A2a and Adenosine", "1.55E − 02", "2.46E − 02", "4.52E − 02", "4.65E − 02", "2", "HRAS, IKBKB"], ["SMP00391", "Insulin Signalling", "1.89E − 01", "1.89E − 01", "3.46E − 01", "5.66E − 01", "1", "HRAS"]], "row_count": 73, "column_count": 8, "numeric_cells": 420, "header_rows": 2, "locator": "section[13]/table-wrap[1]#Tab2"}}, {"id": "asset:table:pmid:33251083:3", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:307d19ecb0dfe452f834715a6c814a8c922a41eba5ff771952acf5734e1660b5", "bytes": 17321, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[13]/table-wrap[2]#Tab3", "version": null, "note": "The enriched pathway terms of the down regulated differentially expressed genes", "structure": {"pmcid": "PMC7679428", "section_index": 5, "section_title": "Pathway enrichment analysis for DEGs", "row_count": 91, "column_count": 8}, "table": {"label": "Table 3", "caption": "The enriched pathway terms of the down regulated differentially expressed genes", "rows": [["BIOCYC", "", "", "", "", "", "", ""], ["Pathway ID", "Pathway Name", "P-value", "FDR B&H", "FDR B&Y", "Bonferroni", "Gene Count", "Gene"], ["703092", "Citrulline-nitric oxide cycle", "8.83E − 02", "2.53E − 01", "8.24E − 01", "1.00E + 00", "1", "NOS2"], ["142419", "Phospholipases", "9.82E − 02", "2.53E − 01", "8.24E − 01", "1.00E + 00", "1", "PLA2G2E, PLA2G2A"], ["545273", "Glycoaminoglycan-protein linkage region biosynthesis", "1.05E − 01", "2.53E − 01", "8.24E − 01", "1.00E + 00", "1", "B3GAT1"], ["545323", "Urate biosynthesis/inosine 5′-phosphate degradation", "1.05E − 01", "2.53E − 01", "8.24E − 01", "1.00E + 00", "1", "NT5E"], ["142383", "Tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde", "1.21E − 01", "2.53E − 01", "8.24E − 01", "1.00E + 00", "1", "IDO1"], ["KEGG", "", "", "", "", "", "", ""], ["83051", "Cytokine-cytokine receptor interaction", "3.05E − 61", "5.54E − 59", "3.21E − 58", "5.54E − 59", "69", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, TNFRSF9, IL17A, PDGFB, TNFSF12, IL17B, TNFRSF14, TNFRSF10C, CCL26,IL17F, TNFRSF4, IL22RA2, IL21, CCL7, CCR6, CCL11, CCL13, CCR8, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, KIT, CX3CL1, CXCL12, IL19, CCR10, XCR1, CXCL13, PPBP, IL23A, IFNA2, IFNAR1, IFNB1, IFNG, TGFBR1, LIF, CSF1R, CSF2, CSF2RB, CSF3R, IL20, IL22,, CD40, TNFRSF13C, LTA, IL1RAP, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7, IL26, CXCR1, IL9, CXCR2"], ["83078", "Hematopoietic cell lineage", "4.22E − 35", "3.84E − 33", "2.22E − 32", "7.67E − 33", "34", "HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, CD55, MME, KIT, CR2, TFRC, CD1A, CD3E, CSF1R, CSF2, CD8A, CD9, CSF3R, CD19, MS4A1, CD22, CD34, CD44, CD59, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7"], ["842771", "Inflammatory bowel disease (IBD)", "4.58E − 32", "2.78E − 30", "1.61E − 29", "8.34E − 30", "28", "IL10, IL12A, IL12B, IL13, IL17A, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, GATA3, IL17F, STAT6, IL21, RELA, IL23A, IFNG, IL22, RORC, IL2, IL4, IL4R, IL5, IL6"], ["83077", "Jak-STAT signaling pathway", "4.56E − 26", "1.19E − 24", "6.86E − 24", "8.30E − 24", "33", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, BCL2, STAT5A, STAT6, PTPN6, IL22RA2, IL21, IL19, IL23A, IFNA2, IFNAR1, IFNB1, IFNG, LIF, CSF2, CSF2RB, CSF3R, IL20, IL22, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7, IL9"], ["213780", "Tuberculosis", "3.41E − 25", "6.89E − 24", "3.99E − 23", "6.20E − 23", "34", "IL10, IL10RA, IL12A, IL12B, CEBPB, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, BCL2, CD209, BID, FCGR2A, FCGR2B, CARD9, NOS2, CASP3, RELA, TLR9, IL23A, IFNA2, IFNB1, IFNG, TIRAP, IRAK4, CD74, MAPK11, CTSS, IL6"], ["83120", "Asthma", "4.56E − 24", "8.30E − 23", "4.80E − 22", "8.30E − 22", "18", "IL10, IL13, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, FCER1A, CCL11, CD40, IL3, IL4, IL5, IL9"], ["125138", "Viral myocarditis", "2.26E − 16", "2.06E − 15", "1.19E − 14", "4.12E − 14", "17", "HLA-B, HLA-C, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, CD55, BID, CASP3, CD80, CD86, CD40"], ["373901", "HTLV-I infection", "2.85E − 15", "2.35E − 14", "1.36E − 13", "5.18E − 13", "29", "HLA-B, PDGFB, HLA-C, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, ETS1, STAT5A, VCAM1, RELA, RELB, LCK, SLC2A1, TGFBR1, CD3E, CSF2, EGR1, EGR2, CD40, TNFRSF13C, LTA, IL2, IL6"], ["213306", "Measles", "4.04E − 12", "2.53E − 11", "1.47E − 10", "7.35E − 10", "19", "IL12A, IL12B, IL13, CD46, TNFRSF10C, CD209, STAT5A, FCGR2B, RELA, TLR9, IFNA2, IFNAR1, IFNB1, IFNG, CD3E, IRAK4, IL2, IL4, IL6"], ["83074", "Antigen processing and presentation", "7.12E − 12", "4.32E − 11", "2.50E − 10", "1.30E − 09", "15", "HLA-B, HLA-C, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, IFNG, CD8A, CD74, CTSS"], ["217173", "Influenza A", "4.98E − 11", "2.75E − 10", "1.59E − 09", "9.07E − 09", "20", "IL12A, IL12B, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1,HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, TNFRSF10C, RELA, IFNA2, IFNAR1, IFNB1, IFNG, IRAK4, MAPK11, IL6"], ["Pathway interaction database", "", "", "", "", "", "", ""], ["137933", "IL4-mediated signaling events", "7.74E − 16", "8.36E − 14", "4.40E − 13", "8.36E − 14", "17", "IL10, IL13RA1, CEBPB, AICDA, ETS1, CCL26, STAT5A, STAT6, PTPN6, PIGR, CCL11, THY1, EGR2, LTA, IL4, IL4R, IL5"], ["137922", "IL12-mediated signaling events", "9.23E − 15", "4.99E − 13", "2.62E − 12", "9.97E − 13", "16", "IL12A, IL12B, HLA-DRA, HLA-DRB1, STAT5A, STAT6, EOMES, NOS2, RELA, RELB, LCK, IFNG, CD3E, CD8A, IL2, IL4"], ["138000", "IL23-mediated signaling events", "1.32E − 12", "4.75E − 11", "2.50E − 10", "1.42E − 10", "12", "IL12B, IL17A, IL17F, STAT5A, NOS2, IL19, RELA, IL23A, IFNG, CD3E, IL2, IL6"], ["137929", "IL27-mediated signaling events", "1.43E − 11", "3.87E − 10", "2.04E − 09", "1.55E − 09", "10", "IL12A, IL12B, IL17A, GATA3, STAT5A, IFNG, EBI3, IL2, IL6, IL27"], ["138058", "BCR signaling pathway", "3.00E − 07", "4.05E − 06", "2.13E − 05", "3.24E − 05", "10", "ETS1, PTPN6, FCGR2B, BTK, POU2F2, RELA, CD19, CD22, CD79A, CD79B"], ["138055", "TCR signaling in naive CD8 + T cells", "2.28E − 04", "1.30E − 03", "6.82E − 03", "2.46E − 02", "6", "PTPN6, LCK, CD3E, CD8A, CD80, CD86"], ["137939", "Direct p53 effectors", "2.95E − 03", "1.33E − 02", "7.00E − 02", "3.18E − 01", "8", "SPP1, BCL2, TNFRSF10C, BID, CD82, MAP4K4, CX3CL1, LIF"], ["138081", "FAS (CD95) signaling pathway", "3.67E − 03", "1.42E − 02", "7.46E − 02", "3.97E − 01", "4", "BID, BTK, CASP3, MAPK11"], ["137995", "HIV-1 Nef: Negative effector of Fas and TNF-alpha", "3.67E − 03", "1.42E − 02", "7.46E − 02", "3.97E − 01", "4", "BCL2, BID, CASP3, RELA"], ["137944", "IL1-mediated signaling events", "2.58E − 02", "6.45E − 02", "3.40E − 01", "1.00E + 00", "3", "TOLLIP, RELA, IRAK4"], ["REACTOME", "", "", "", "", "", "", ""], ["1269310", "Cytokine Signaling in Immune system", "3.81E − 46", "2.02E − 43", "1.39E − 42", "2.02E − 43", "86", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, IL16, TRAF3, TNFRSF9, IL17A, HLA-B, PDGFB, HLA-C, TNFSF12, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, TNFRSF14, GATA3, PSMB10, BCL2, PTAFR, IL1RL2, IL17F, PTK2, STAT5A, STAT6, TNFRSF4, PTPN6, IL22RA2, TOLLIP, CCL11, CCL19, CCL20, CCL22, KIT, NOS2, VCAM1, IL19, RAG1, RAG2, ZEB1, FN1, DUSP4, IRF8, CASP3, RELA, RELB, LCK, IL23A, S1PR1, IFNA2, IFNAR1, IFNB1, IFNG, LIF, CSF1R, CSF2, CSF2RB, CSF3R, EBI3, EGR1, IL20, CD80, CD86, IL22, CD40, IRAK4, CD44, TNFRSF13C, LTA, RORC, IL1RAP, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7, IL27, IL9"], ["1269318", "Signaling by Interleukins", "2.98E − 33", "7.91E − 31", "5.42E − 30", "1.58E − 30", "62", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, IL16, IL17A, PDGFB, GATA3, PSMB10, BCL2, PTAFR, IL1RL2, IL17F, PTK2, STAT5A, STAT6, PTPN6, IL22RA2, TOLLIP, CCL11, CCL19, CCL20, CCL22, KIT,NOS2, VCAM1, IL19, RAG1, RAG2, ZEB1, FN1, DUSP4, CASP3, RELA, LCK, IL23A, S1PR1, LIF, CSF1R, CSF2, CSF2RB, CSF3R, EBI3, IL20, CD80, CD86, IL22, IRAK4, RORC, IL1RAP, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R,IL7, IL27, IL9"], ["1269203", "Innate Immune System", "4.93E − 25", "8.72E − 23", "5.98E − 22", "2.62E − 22", "82", "MASP1, TRAF3, HLA-B, PDGFB, HLA-C, MAPKAPK2, CTSC, PECAM1, MBL2, PSMB10, CD55, CD46, BCL2, DEFB103B, PTAFR, CD209, PTK2, STAT6, DEFB1, DEFB4A, CFD, PTPN6, FCAR, FCER1A, PIGR, FCGR2A, CARD9, BTK, MIF, PLA2G2A, TOLLIP, C1R, C1S, C4A, PLAU, C4BPA, CCR6, MME, C6, C7, C8A, C8B, C9, KIT, NOS2, GPI, LILRA3, VTN, CLEC6A, FN1, ATG7, ITLN1, DUSP4, ICAM2, ICAM3, RELA, RELB, TLR9, LCK, PPBP, CFI, IFNA2, LGALS3, IFNB1, CSF2, CSF2RB, CD19, SIGIRR, CD80, CD86, TIRAP, IRAK4, CD44, CD59, MAPK11, IL2, IL3, IL5, CTSS, CXCR1, MASP2, CXCR2"], ["1269171", "Adaptive Immune System", "1.51E − 15", "1.15E − 13", "7.86E − 13", "8.03E − 13", "52", "HLA-B, PDGFB, HLA-C, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, CTSC, HLA-DRB1, TNFRSF14, PSMB10, PTPN22, CD209, PTPN6, SLAMF6, FCGR2B, BTK, KIT, KLRB1, LILRB5, VCAM1, ICOSLG, LILRA1, LILRA3, LILRA2, ATG7, ICAM2, ICAM3, ICAM4, RELA, BTLA, LCK, CD1A, CD3E, CD8A, CD19, CD22, CD80, CD86, ICAM5, TIRAP, CD34, CD40, CD74, CD79A, CD79B, CTLA4, CTSS"], ["1269201", "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell", "5.01E − 14", "2.66E − 12", "1.82E − 11", "2.66E − 11", "21", "HLA-B, HLA-C, SLAMF6, FCGR2B, KLRB1, LILRB5, VCAM1, LILRA1, LILRA3, LILRA2, ICAM2, ICAM3, ICAM4, CD1A, CD3E, CD8A, CD19, CD22, ICAM5, CD34, CD40"], ["1269546", "Peptide ligand-binding receptors", "6.17E − 08", "1.82E − 06", "1.25E − 05", "3.27E − 05", "17", "CCR6, CCL13, CCR8, CCL16, CCL19, CCL20, CXCL11, XCL1, CX3CL1, CXCL12, CCR10, XCR1, CXCL13, PPBP, EDNRB, CXCR1, CXCR2"], ["1269545", "Class A/1 (Rhodopsin-like receptors)", "4.71E − 07", "1.14E − 05", "7.79E − 05", "2.50E − 04", "21", "PTAFR, PTGER4, CCR6, CCL13,CCR8,CCL16, CCL19, CCL20, CXCL11, XCL1, CX3CL1, CXCL12, CCR10, XCR1, CXCL13, GPR183, PPBP, S1PR1, EDNRB, CXCR1, CXCR2"], ["1269340", "Hemostasis", "1.15E − 04", "1.47E − 03", "1.01E − 02", "6.09E − 02", "26", "CD244, PDGFB, PECAM1, GATA3, PTK2, CFD, PTPN6, MIF, PLAU, NOS2, SELE, SELPLG, FN1, LCK, PPBP, IFNA2, IFNB1, CSF2, CSF2RB, CD9, CD44, CD48, CD74, IL2, IL3, IL5"], ["1269501", "MAPK family signaling cascades", "3.27E − 04", "3.40E − 03", "2.33E − 02", "1.74E − 01", "15", "PDGFB, PSMB10, PTK2, KIT, RAG1, RAG2, FN1, DUSP4, CSF2, CSF2RB, IL2, IL3, IL5, IL6, IL6R"], ["1269240", "Toll Like Receptor TLR6:TLR2 Cascade", "3.46E − 04", "3.40E − 03", "2.33E − 02", "1.84E − 01", "8", "MAPKAPK2, BTK, DUSP4, RELA, SIGIRR, TIRAP, IRAK4, MAPK11"], ["Gen MAPP", "", "", "", "", "", "", ""], ["MAP00400", "Phenylalanine tyrosine and tryptophan biosynthesis", "1.38E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "1", "BID"], ["MAP_kinase_activity", "MAP kinase activity", "1.38E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "1", "MAPK11"], ["MAP00010", "Glycolysis Gluconeogenesis", "2.47E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "2", "BID, GPI"], ["MAP00030", "Pentose phosphate", "2.70E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "1", "GPI"], ["MAP00590", "Prostaglandin and leukotriene metabolism", "2.96E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "1", "PLA2G2A"], ["MAP00500", "Starch and sucrose metabolism", "3.34E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "1", "GPI"], ["MAP00330", "Arginine and proline metabolism", "5.05E − 01", "5.81E − 01", "1.00E + 00", "1.00E + 00", "1", "NOS2"], ["MAP00380", "Tryptophan metabolism", "5.73E − 01", "5.81E − 01", "1.00E + 00", "1.00E + 00", "1", "IDO1"], ["MAP00561", "Glycerolipid metabolism", "5.81E − 01", "5.81E − 01", "1.00E + 00", "1.00E + 00", "1", "PLA2G2A"], ["MSigDB C2 BIOCARTA (v6.0)", "", "", "", "", "", "", ""], ["M5883", "Genes encoding secreted soluble factors", "4.86E − 27", "7.82E − 25", "4.43E − 24", "7.82E − 25", "46", "IL10, IL12A, IL12B, IL13, IL16, IL17A, PDGFB, TNFSF12, IL17B, CCL26, IL17F, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, IL19, CXCL13, PPBP, IL23A, IFNA2, IFNB1, IFNG, LIF, CSF2, EBI3, IL20, IL22, LTA, IL2, IL3, IL4, IL5, IL6, IL7, IL26, IL9"], ["M17406", "Cytokine Network", "2.71E − 22", "2.18E − 20", "1.24E − 19", "4.36E − 20", "15", "IL10, IL12A, IL12B, IL13, IL16, IL17A, IFNB1, IFNG, LTA, IL2, IL3, IL4, IL5, IL6, IL9"], ["M6910", "Cytokines and Inflammatory Response", "5.19E − 21", "2.78E − 19", "1.58E − 18", "8.35E − 19", "16", "IL10, IL12A, IL12B, IL13, HLA-DRA, HLA-DRB1, IFNB1, IFNG, CSF2, LTA, IL2, IL3, IL4, IL5, IL6, IL7"], ["M5885", "Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors", "7.80E − 21", "3.14E − 19", "1.78E − 18", "1.26E − 18", "57", "IL10, IL12A, IL12B, IL13, MASP1, IL16, IL17A, PDGFB, TNFSF12, CTSC, IL17B, MBL2, CCL26, IL17F, CD209, PLAU, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, IL19, CLEC6A, ITLN1, CXCL13, ITLN2, PPBP, IL23A, IFNA2, LGALS3, IFNB1, IFNG, LIF, CSF2, EBI3, IL20, IL22, LTA, IL2, IL3, IL4, IL5, CTSS, IL6, IL7, IL26, IL9, MASP2"], ["M5889", "Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins", "4.62E − 17", "1.49E − 15", "8.43E − 15", "7.44E − 15", "61", "IL10, IL12A, IL12B, IL13, MASP1, IL16, IL17A, PDGFB, TNFSF12, SPP1, CTSC,IL17B, MBL2, CCL26, IL17F, CD209, PLAU, CCL7,CCL11, CCL13, CCL15,CCL16, CCL18, CCL19, CCL20,CCL22, CCL24, CXCL11,XCL1, CX3CL1, CXCL12, IL19, VTN,CLEC6A, FN1, ITLN1, CXCL13,ITLN2, PPBP, IL23A,IFNA2, LGALS3, IFNB1, IFNG, TGFBI, LIF, CSF2, EBI3, IL20, IL22, LTA, IL2, IL3, IL4, IL5, CTSS, IL6, IL7, IL26, IL9, MASP2"], ["M1467", "The Co-Stimulatory Signal During T-cell Activation", "4.81E − 11", "7.03E − 10", "3.98E − 09", "7.74E − 09", "9", "HLA-DRA, HLA-DRB1, ICOSLG, LCK, CD3E, CD80, CD86, CTLA4, IL2"], ["M3952", "Cells and Molecules involved in local acute inflammatory response", "1.02E − 05", "7.46E − 05", "4.22E − 04", "1.64E − 03", "5", "C6, C7, VCAM1, SELPLG,IL6"], ["M18215", "Role of Tob in T-cell activation", "3.16E − 05", "2.21E − 04", "1.25E − 03", "5.08E − 03", "5", "IFNG, TGFBR1, CD3E, IL2, IL4"], ["M13968", "HIV-I Nef: negative effector of Fas and TNF", "6.46E − 04", "3.15E − 03", "1.78E − 02", "1.04E − 01", "6", "BCL2,PTK2, BID, CASP3, RELA, ARHGDIB"], ["M13247", "T Cytotoxic Cell Surface Molecules", "1.90E − 03", "6.80E − 03", "3.85E − 02", "3.06E − 01", "3", "CD3E, CD8A, THY1"], ["Panther DB", "", "", "", "", "", "", ""], ["P00036", "Interleukin signaling pathway", "6.51E − 19", "2.47E − 17", "1.05E − 16", "2.47E − 17", "22", "IL10,IL10RA, IL12A,IL13, IL13RA1, IL17A, MAPKAPK2, IL17F, STAT5A, STAT6, IL21, IL23A, IL2, IL4, IL4R, IL5, IL6, IL6R, IL7, CXCR1, IL9, CXCR2"], ["P00031", "Inflammation mediated by chemokine and cytokine signaling pathway", "4.36E − 07", "8.28E − 06", "3.50E − 05", "1.66E − 05", "16", "CCL26, CCL7, CCR6, CCL11, CCL13, CCR8, CCL18, CCL20, CCL22, CX3CL1, CCR10, XCR1, IFNAR1, IFNG, CXCR1, CXCR2"], ["P00053", "T cell activation", "7.23E − 05", "8.13E − 04", "3.44E − 03", "2.75E − 03", "8", "HLA-DPA1, HLA-DQA1, HLA-DRA, LCK, CD3E, CD80, CD86, CD74"], ["P00010", "B cell activation", "8.56E − 05", "8.13E − 04", "3.44E − 03", "3.25E − 03", "7", "PTPN6, BTK, CD19, CD22, CD79A, CD79B, MAPK11"], ["P00054", "Toll receptor signaling pathway", "2.14E − 03", "1.62E − 02", "6.86E − 02", "8.12E − 02", "5", "TOLLIP, RELA, TLR9, IFNB1, IRAK4"], ["P00006", "Apoptosis signaling pathway", "2.67E − 03", "1.69E − 02", "7.14E − 02", "1.01E − 01", "7", "BCL2, BID, BCL2L11, CASP3, RELA, RELB, LTA"], ["P00035", "Interferon-gamma signalingpathway", "1.42E − 02", "7.69E − 02", "3.25E − 01", "5.39E − 01", "3", "PTPN6, IFNG, MAPK11"], ["P00046", "Oxidative stress response", "5.17E − 02", "1.86E − 01", "7.88E − 01", "1.00E + 00", "3", "BCL2, DUSP4, MAPK11"], ["P00047", "PDGF signaling pathway", "8.39E − 02", "2.44E − 01", "1.00E + 00", "1.00E + 00", "5", "PDGFB, MAPKAPK2, ETS1, STAT5A, STAT6"], ["P00034", "Integrin signalling pathway", "5.94E − 01", "7.28E − 01", "1.00E + 00", "1.00E + 00", "3", "ITGAE, PTK2, FN1"], ["Pathway Ontology", "", "", "", "", "", "", ""], ["PW:0000104", "intrinsic apoptotic", "1.82E − 03", "7.63E − 02", "3.30E − 01", "7.63E − 02", "4", "BCL2, BID, BCL2L11, CASP3"], ["PW:0000515", "Interleukin-10 signaling", "7.84E − 01", "1.57E − 01", "6.78E − 01", "6.78E − 01", "1", "IL10"], ["PW:0000516", "Interleukin-6 signaling", "7.84E − 01", "1.57E − 01", "6.78E − 01", "6.78E − 01", "1", "IL6"], ["PW:0000499", "Nuclear Factor Kappa B signaling", "9.58E − 01", "1.60E − 01", "6.91E − 01", "6.91E − 01", "2", "RELA, RELB"], ["PW:0000009", "programmed cell death", "1.00E + 00", "1.80E − 01", "7.78E − 01", "7.78E − 01", "2", "BCL2, CASP3"], ["PW:0000102", "The extracellular signal-regulated RAF/MEK/ERK signaling", "8.14E − 02", "2.18E − 01", "9.44E − 01", "1.00E + 00", "2", "SPP1, S1PR1"], ["PW:0000529", "angiotensin (1-7) signaling", "8.83E − 02", "2.18E − 01", "9.44E − 01", "1.00E + 00", "1", "MME"], ["PW:0000106", "extrinsic apoptotic", "1.05E − 01", "2.45E − 01", "1.00E + 00", "1.00E + 00", "1", "CASP3"], ["PW:0000559", "hexosamine biosynthetic", "1.21E − 01", "2.55E − 01", "1.00E + 00", "1.00E + 00", "1", "GPI"], ["PW:0000228", "G protein signaling via Galphai family", "1.53E − 01", "2.80E − 01", "1.00E + 00", "1.00E + 00", "1", "S1PR1"], ["SMPDB", "", "", "", "", "", "", ""], ["SMP00094", "Sulindac Pathway", "1.21E − 01", "4.52E − 01", "1.00E + 00", "1.00E + 00", "1", "PLA2G2A"], ["SMP00040", "Glycolysis", "2.14E − 01", "4.52E − 01", "1.00E + 00", "1.00E + 00", "1", "GPI"], ["SMP00063", "Tryptophan Metabolism", "2.70E − 01", "4.52E − 01", "1.00E + 00", "1.00E + 00", "1", "IDO1"], ["SMP00379", "NifedipinePathway", "2.83E − 01", "4.52E − 01", "1.00E + 00", "1.00E + 00", "1", "EDNRB"], ["SMP00006", "Tyrosine Metabolism", "3.59E − 01", "4.84E − 01", "1.00E + 00", "1.00E + 00", "1", "MIF"], ["SMP00320", "Intracellular Signalling Through Adenosine Receptor A2a and Adenosine", "4.57E − 01", "4.84E − 01", "1.00E + 00", "1.00E + 00", "1", "MAPK11"]], "row_count": 91, "column_count": 8, "numeric_cells": 544, "header_rows": 2, "locator": "section[13]/table-wrap[2]#Tab3"}}, {"id": "asset:table:pmid:33251083:4", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:3d0cc2025b76ce360a2ebcd6f7a40ea02ca2add666d309680d150a2f033eabd0", "bytes": 8645, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[14]/table-wrap[1]#Tab4", "version": null, "note": "The enriched GO terms of the up regulated differentially expressed genes", "structure": {"pmcid": "PMC7679428", "section_index": 6, "section_title": "Gene ontology (GO) enrichment analysis for DEGs", "row_count": 31, "column_count": 9}, "table": {"label": "Table 4", "caption": "The enriched GO terms of the up regulated differentially expressed genes", "rows": [["GO ID", "CATEGORY", "GO Name", "P Value", "FDR B&H", "FDR B&Y", "Bonferroni", "Gene Count", "Gene"], ["GO:0002682", "BP", "Regulation of immune system process", "1.53E − 44", "5.68E − 41", "5.00E − 40", "5.68E − 41", "56", "KLRK1, ATG5, JAK1, JAK2, IFIH1, PDCD1, TRAF2, TRAF6, IKZF3, CD247, ZBTB16, ABL1, HLA-A, IKBKE, CD99, BST2, LILRB2, TBX21, TLR2, LAG3, HRAS, PSMB9, C1QBP, CLEC7A, SERPING1, XBP1, GBP1, SOCS1, C2, CCR1, IKZF1, CCL5, IRF7, CTNNB1, RUNX1, SLAMF7, IKBKB, LCP2, ITGAL, FYN, IL18RAP, ITGB2, IL2RG, IL18R1, KLRC1, ZAP70, GFI1, KLRD1, CX3CR1, STAT1, TP53, NLRP3, STAT3, STAT5B, CEACAM1, IFNAR2"], ["GO:0009607", "BP", "Response to biotic stimulus", "6.86E − 35", "6.36E − 32", "5.59E − 31", "2.54E − 31", "48", "KLRK1, ATG5, JAK1, JAK2, IFIH1, TRAF6, IKZF3, ATG10, ABL1, HLA-A, IKBKE, BST2, LILRB2, TBX21, TLR2, GZMB, LAG3, HRAS, PSMB9, C1QBP, CLEC7A, SERPING1, XBP1, GBP1, SOCS1, C2, IRF5, CCL5, IRF7, CCR5, GNLY, SLAMF7, IKBKB, FYN, IFI35, IL18RAP, ITGB2, MAP4K2, GFI1, KLRD1, CX3CR1, STAT1, TP53, NLRP3, MX1, STAT5B, CEACAM1, IFNAR2"], ["GO:0006952", "BP", "Defense response", "1.12E − 33", "5.92E − 31", "5.21E − 30", "4.14E − 30", "49", "KLRK1, JAK1, JAK2, IFIH1, TRAF6, HLA-A, IKBKE, BST2, LILRB2, TLR2, GZMB, LAG3, HRAS, PSMB9, C1QBP, CLEC7A, SERPING1, GBP1, CCRL2, SOCS1, C2, CCR1, IRF5, CCL5, IRF7, CCR5, GNLY, LTB4R, SLAMF7, IKBKB, ITGAL, FYN, IFI35, IL18RAP, ITGB2, IL18R1, MAP4K2, GFI1, KLRD1, CX3CR1, STAT1, TP53, NLRP3, STAT3, STAT4, MX1, STAT5B, CEACAM1, IFNAR2"], ["GO:0001816", "BP", "Cytokine production", "3.84E − 27", "1.29E − 24", "1.14E − 23", "1.42E − 23", "34", "KLRK1, ATG5, JAK2, IFIH1, TRAF2, TRAF6, CD247, ABL1, IKBKE, BST2, LILRB2, TBX21, TLR2, LAG3, HRAS, C1QBP, CLEC7A, XBP1, GBP1, SOCS1, IRF5, CCL5, IRF7, CTNNB1, RUNX1, LCP2, IL18RAP, IL18R1, CX3CR1, STAT1, NLRP3, STAT3, STAT5B, CEACAM1"], ["GO:0034097", "BP", "Response to cytokine", "2.23E − 26", "6.90E − 24", "6.07E − 23", "8.28E − 23", "38", "JAK1, JAK2, IFIH1, TRAF2, TRAF6, HLA-A, IKBKE, BST2, TLR2, PSMB9, XBP1, GBP1, CCRL2, SOCS1, CCR1, IRF5, CCL5, IRF7, CCR5, CTNNB1, RUNX1, IKBKB, FYN, IFI35, IL18RAP, ITGB2, IL2RG, IL18R1, GFI1, CX3CR1, STAT1, TP53, STAT3, STAT4, MX1, STAT5B, CEACAM1, IFNAR2"], ["GO:0042110", "BP", "T cell activation", "1.68E − 25", "4.43E − 23", "3.90E − 22", "6.21E − 22", "28", "CCND3, KLRK1, ATG5, PDCD1, TRAF6, ZBTB16, ABL1, LILRB2, TBX21, LAG3, CLEC7A, XBP1, SOCS1, IKZF1, CCL5, CTNNB1, RUNX1, ITGAL, FYN, ITGB2, IL2RG, IL18R1, ZAP70, TP53, NLRP3, STAT3, STAT5B, CEACAM1"], ["GO:0045321", "BP", "Leukocyte activation", "6.65E − 23", "1.30E − 20", "1.14E − 19", "2.47E − 19", "36", "CCND3, KLRK1, ATG5, JAK2, PDCD1, TRAF6, IKZF3, ZBTB16, ABL1, BST2, LILRB2, TBX21, TLR2, LAG3, CLEC7A, XBP1, SOCS1, IKZF1, CCL5, CTNNB1, RUNX1, SLAMF7, LCP2, ITGAL, FYN, IL18RAP, ITGB2, IL2RG, IL18R1,ZAP70, CX3CR1,TP53, NLRP3, STAT3, STAT5B, CEACAM1"], ["GO:0001775", "BP", "Cell activation", "2.83E − 22", "5.00E − 20", "4.40E − 19", "1.05E − 18", "37", "CCND3, KLRK1, ATG5, JAK2, PDCD1, TRAF6, IKZF3, ZBTB16, ABL1, BST2, LILRB2, TBX21, TLR2, LAG3, CLEC7A, XBP1, SOCS1, IKZF1, CCL5, CTNNB1, RUNX1, SLAMF7, LCP2, ITGAL, FYN, IL18RAP, ITGB2, IL2RG, IL18R1, ZAP70, CX3CR1, TP53, NLRP3, STAT3, STAT5B, CEACAM1, GP1BB"], ["GO:0080134", "BP", "Regulation of response to stress", "3.88E − 18", "3.59E − 16", "3.16E − 15", "1.44E − 14", "34", "KLRK1, JAK1, JAK2, IFIH1, TRAF2, TRAF6, ABL1, IKBKE, MAP4K1, TLR2, LAG3, HRAS, PSMB9, C1QBP, CLEC7A, SERPING1, XBP1, SOCS1, CCL5, IRF7, CTNNB1, IKBKB, FYN, IL18RAP, ITGB2, MAP4K2, GFI1, CX3CR1, STAT1, TP53, NLRP3, STAT5B, CEACAM1, IFNAR2"], ["GO:0051094", "BP", "Positive regulation of developmental process", "1.52E − 15", "1.00E − 13", "8.79E − 13", "5.64E − 12", "31", "JAK1, JAK2, TRAF6, ZBTB16, ABL1, LILRB2, TBX21, TLR2, C1QBP, CLEC7A, XBP1, SOCS1, CCR1, IKZF1, CCL5, CTNNB1, RUNX1, IKBKB, FYN, ITGB2, IL2RG, ZAP70, GFI1, CX3CR1, STAT1, TP53, NLRP3, STAT3, STAT5B, SMAD5, CEACAM1"], ["GO:0098552", "CC", "Side of membrane", "1.17E − 11", "1.54E − 09", "9.47E − 09", "3.08E − 09", "18", "KLRK1, PDCD1, TRAF2, TRAF6, HLA-A, TLR2, LAG3, CCRL2, CCR1, CCR5, SLAMF7, IKBKB, ITGAL, FYN, ITGB2, IL2RG, KLRD1, CX3CR1"], ["GO:0043235", "CC", "Receptor complex", "3.20E − 10", "2.81E − 08", "1.73E − 07", "8.44E − 08", "15", "TRAF2, TRAF6, CD247, TLR2, IKBKB, LCP2, ITGAL, IL18RAP, ITGB2, IL2RG, IL18R1, KLRC1, ZAP70, KLRD1, CEACAM1"], ["GO:0009986", "CC", "Cell surface", "2.20E − 09", "9.68E − 08", "5.96E − 07", "5.81E − 07", "19", "KLRK1, PDCD1, HLA-A, BST2, LILRB2, TLR2, LAG3, C1QBP, CLEC7A, CCRL2, CCR1, CCR5, SLAMF7, ITGAL, ITGB2, IL2RG, KLRD1, CX3CR1, CEACAM1"], ["GO:0005887", "CC", "Integral component of plasma membrane", "2.88E − 07", "6.90E − 06", "4.25E − 05", "7.59E − 05", "21", "KLRK1, TRAF2, TRAF6, CD99, LILRB2, TLR2, CCRL2, CCR1, CCR5, LTB4R, IKBKB, ITGAL, IL18RAP, ITGB2, IL2RG, IL18R1, KLRC1, CX3CR1, CEACAM1, GP1BB, IFNAR2"], ["GO:0098805", "CC", "Whole membrane", "8.24E − 06", "1.55E − 04", "9.56E − 04", "2.18E − 03", "19", "ATG5, JAK2, TRAF2, TRAF6, HLA-A, IKBKE, BST2, LILRB2, TLR2, IRF7, LTB4R, CTNNB1, IKBKB, LCP2, ITGAL, FYN, ITGB2, ZAP70, CEACAM1"], ["GO:0044194", "CC", "cytolytic granule", "1.84E − 04", "2.70E − 03", "1.66E − 02", "4.87E − 02", "2", "GZMB, GNLY"], ["GO:0000790", "CC", "Nuclear chromatin", "9.72E − 04", "1.17E − 02", "7.18E − 02", "2.57E − 01", "16", "IKZF3, ZBTB16, TBX21, XBP1, IRF5, IKZF1, IRF7, CTNNB1, RUNX1, GFI1, STAT1, TP53, STAT3, STAT4, STAT5B, SMAD5"], ["GO:0090575", "CC", "RNA polymerase II transcription factor complex", "5.30E − 03", "4.21E − 02", "2.59E − 01", "1.00E + 00", "4", "CTNNB1, RUNX1, TP53, STAT3"], ["GO:0005667", "CC", "Transcription factor complex", "5.46E − 03", "4.21E − 02", "2.59E − 01", "1.00E + 00", "6", "IKZF1, CTNNB1, RUNX1, TP53, STAT3, SMAD5"], ["GO:0048471", "CC", "Perinuclear region of cytoplasm", "8.69E − 03", "4.78E − 02", "2.94E − 01", "1.00E + 00", "8", "TRAF6, ABL1, HRAS, CTNNB1, FYN, CX3CR1, STAT1, MX1"], ["GO:0019900", "MF", "Kinase binding", "6.20E − 10", "1.90E − 07", "1.27E − 06", "2.82E − 07", "19", "CCND3, KLRK1, JAK2, TRAF2, TRAF6, CD247, ABL1, C1QBP, XBP1, SOCS1, CCL5, CTNNB1, IKBKB, ITGB2, MAP4K2, TP53, STAT3, CEACAM1, IFNAR2"], ["GO:0005102", "MF", "Signaling receptor binding", "7.06E − 08", "3.57E − 06", "2.39E − 05", "3.21E − 05", "23", "KLRK1, JAK1, JAK2, TRAF2, TRAF6, ABL1, HLA-A, LILRB2, TLR2, LAG3, C1QBP, CLEC7A, CCRL2, SOCS1, CCL5, CTNNB1, FYN, ITGB2, KLRD1, STAT1, TP53, STAT3, STAT5B"], ["GO:0044212", "MF", "Transcription regulatory region DNA binding", "1.45E − 07", "5.42E − 06", "3.63E − 05", "6.57E − 05", "17", "TRAF6, IKZF3, ZBTB16, TBX21, XBP1, IRF5, IKZF1, IRF7, CTNNB1, RUNX1, GFI1, STAT1, TP53, STAT3, STAT4, STAT5B, SMAD5"], ["GO:0038023", "MF", "Signaling receptor activity", "3.46E − 07", "1.13E − 05", "7.54E − 05", "1.58E − 04", "21", "KLRK1, CD247, LILRB2, TLR2, LAG3, CLEC7A, CCRL2, CCR1, CCL5, CCR5, LTB4R, ITGAL, IL18RAP, ITGB2, IL2RG, IL18R1, KLRC1, KLRD1, CX3CR1, GP1BB, IFNAR2"], ["GO:0043565", "MF", "Sequence-specific double-stranded DNA binding", "5.76E − 06", "9.35E − 05", "6.27E − 04", "2.62E − 03", "16", "IKZF3, ZBTB16, ABL1, TBX21, XBP1, IRF5, IKZF1, IRF7, RUNX1, STAT1, TP53, NLRP3, STAT3, STAT4, STAT5B, SMAD5"], ["GO:0016772", "MF", "Transferase activity, transferring phosphorus-containing groups", "8.11E − 06", "1.19E − 04", "7.98E − 04", "3.69E − 03", "20", "CCND3, JAK1, JAK2, TRAF2, TRAF6, ABL1, IKBKE, MAP4K1, HRAS, SOCS1, CCL5, CTNNB1, IKBKB, LCP2, FYN, ZAP70, MAP4K2, TP53, STAT3, CEACAM1"], ["GO:0070011", "MF", "Peptidase activity, acting on L-amino acid peptides", "1.03E − 05", "1.38E − 04", "9.27E − 04", "4.66E − 03", "16", "ATG5, JAK2, IFIH1, TRAF2, TRAF6, BST2, GZMB, PSMB9, CLEC7A, SERPING1, C2, FYN, STAT1, TP53, NLRP3, STAT3"], ["GO:0000977", "MF", "RNA polymerase II regulatory region sequence-specific DNA binding", "1.25E − 05", "1.58E − 04", "1.06E − 03", "5.67E − 03", "13", "IKZF3, ZBTB16, TBX21, XBP1, IKZF1, IRF7, RUNX1, STAT1, TP53, STAT3, STAT4, STAT5B, SMAD5"], ["GO:0035639", "MF", "Purine ribonucleoside triphosphate binding", "3.00E − 04", "1.75E − 03", "1.17E − 02", "1.37E − 01", "17", "JAK1, JAK2, IFIH1, ABL1, IKBKE, MAP4K1, HRAS, CUL9, GBP1, RUNX1, IKBKB, FYN, ZAP70, MAP4K2, TP53, NLRP3, MX1"], ["GO:0032559", "MF", "Adenylribonucleotide binding", "1.44E − 03", "6.51E − 03", "4.36E − 02", "6.57E − 01", "14", "JAK1, JAK2, IFIH1, ABL1, IKBKE, MAP4K1, CUL9, RUNX1, IKBKB, FYN, ZAP70, MAP4K2, TP53, NLRP3"]], "row_count": 31, "column_count": 9, "numeric_cells": 206, "header_rows": 1, "locator": "section[14]/table-wrap[1]#Tab4"}}, {"id": "asset:table:pmid:33251083:5", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:9ea3fe1ecbcc8d1365fe22b90c78b557792dba52572caca21621e8b502cab796", "bytes": 17310, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[14]/table-wrap[2]#Tab5", "version": null, "note": "The enriched GO terms of the down regulated differentially expressed genes", "structure": {"pmcid": "PMC7679428", "section_index": 6, "section_title": "Gene ontology (GO) enrichment analysis for DEGs", "row_count": 32, "column_count": 9}, "table": {"label": "Table 5", "caption": "The enriched GO terms of the down regulated differentially expressed genes", "rows": [["GO ID", "Category", "GO Name", "P Value", "FDR B&H", "FDR B&Y", "Bonferroni", "Gene Count", "Gene"], ["GO:0002682", "BP", "Regulation of immune system process", "1.87E − 103", "9.66E − 100", "8.82E − 99", "9.66E − 100", "153", "IL10, IL12A, IL12B, IL13, IRGM, MASP1, TRAF3, IL17A, CEBPB, CD244, HLA-B, HLA-C, IDO1, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, MAPKAPK2, HLA-DQB1, HLA-DRA, CTSC, HLA-DRB1, PECAM1, MBL2, TNFRSF14, GATA3, ETS1, PSMB10, CD55, PTPN22, CD46, BCL2, PTAFR, CD83, PTGER4, IL1RL2, CD209, PTK2, STAT5A, STAT6, TNFRSF4, CFD, PTPN6, SLAMF6, FCER1A, PIGR, FCGR2A, FCGR2B, CARD9, BTK, MIF, IL21, C1R, C1S, C4A, C4BPA, CCL7, CCR6, C6, C7, C8A, CCL19, C8B, CCL20, C9, CCL24, TAL1, XCL1, KIT, CX3CL1, KLRB1, CXCL12, VCAM1, SELE, GPI, RAG1, DPP4, ICOSLG, LILRA1, LILRA2, ZEB1, VTN, CLEC6A, ATG7, ICAM2, ICAM3, ICAM4, CXCL13, CASP3, AIRE, RELA, BTLA, RELB, GPR183, TLR9, LCK, CFI, CR2, IL23A, IFNA2, LGALS3, TFRC,IFNB1, IFNG, LIF, CD1A, CD3E, CSF1R, CSF2, CD8A, THY1, CD9, CSF3R, CD19, TIGIT, MS4A1, EBI3, CD22, IL20, CD80, CD86, ICAM5, TIRAP, CD34, CD40, IRAK4, CD44, CD48, TNFRSF13C, CD59, CD74, CD79A, CD79B, LTA, RORC, CTLA4, PAX5, HAMP, MAPK11, IL2, IL3, IL4, IL4R, IL5, CTSS, IL6, IL6R, IL7, IL27, MASP2, CXCR2"], ["GO:0019221", "BP", "Cytokine-mediated signaling pathway", "1.05E − 84", "1.35E − 81", "1.23E − 80", "5.40E − 81", "131", "IL10, IL10RA, IL12A, IL12B, IL13, IRGM, MASP1, TRAF3, IL17A, ILF3, CEBPB, CD244, HLA-B, AICDA, HLA-C, IDO1, TAGAP, HLA-DPA1, HLA-DPB1, HLA-DQA1, MAPKAPK2, HLA-DQB1, HLA-DRA, HLA-DRB1, MBL2, TNFRSF14, GATA3, PSMB10, CD55, PTPN22, CD46, BCL2, DEFB103B, PTAFR, PTGER4, IL1RL2, CCL26, CD209, STAT5A, BID, DEFB1, DEFB4A, CFD, PTPN6, SLAMF6, FCGR2B, CARD9, BTK, KLRF2, MIF, IL21, PLA2G2A, TOLLIP, C1R, C1S, C4A, C4BPA, CCL7, CCL11, CCL13, BATF3, CCL15, CCL16, C6, C7, CCL18, C8A, CCL19, C8B, CCL20, CCL22, C9, CCL24, CXCL11, XCL1, CX3CL1, NOS2, CXCL12, VCAM1, SELE, RAG2, LILRA2, CLEC6A, BCL2L11, ATG7, ITLN1, ICAM2, ICAM3, IRF8, CXCL13, CASP3, RELA, RELB, TLR9, PPBP, CFI, CR2, IL23A, IFNA2, EDNRB, LGALS3, IFNAR1, IFNB1, IFNG, CSF1R, CSF2, CD8A, CSF2RB, MS4A1, EGR1, SIGIRR, CD80, CD86, TIRAP, CD40, IRAK4, CD44, CD74, CD79B, LTA, HAMP, MAPK11, IL1RAP, IL2, IL4, IL4R, CTSS, IL6, IL6R, IL27, MASP2"], ["GO:0009607", "BP", "RESPONSE to biotic stimulus", "7.42E − 81", "7.65E − 78", "6.99E − 77", "3.83E − 77", "120", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, IRGM, IL16, TRAF3, TNFRSF9, IL17A, CEBPB, HLA-B, PDGFB, HLA-C, TNFSF12, SPP1, HLA-DPA1, HLA-DPB1, HLA-DQA1, MAPKAPK2, HLA-DQB1, HLA-DRA, HLA-DRB1, TNFRSF14, GATA3, ETS1, PSMB10, BCL2, PTAFR, IL1RL2, CCL26, IL17F,STAT5A, STAT6, TNFRSF4, PTPN6, IL22RA2, NFIL3, BTK, MIF, IL21, TOLLIP, CCL7, CCR6, CCL11, CCL13, CCR8, CCL15, MME, CCL16, CCL18, CCL19, CCL20, CCL22,CCL24, CXCL11, XCL1, KIT, CX3CL1, NOS2, CXCL12, VCAM1, IL19, SELE, SELPLG, CCR10, XCR1, TCF7, ZEB1, FN1, IRF8, CXCL13, CASP3, RELA, RELB, PPBP, IL23A, S1PR1, IFNA2, TFRC, IFNAR1, IFNB1, IFNG, LIF, CSF1R, CSF2, CSF2RB, CSF3R, EBI3, EGR1, SIGIRR, IL20, CD80, CD86, TIRAP, IL22, CD40, IRAK4, CD44, TNFRSF13C, CD74, LTA, RORC, HAMP, MAPK11, IL1RAP, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7, IL26, IL27, CXCR1, IL9, CXCR2"], ["GO:0009607", "BP", "Response to biotic stimulus", "7.42E − 81", "7.65E − 78", "6.99E − 77", "3.83E − 77", "131", "IL10, IL10RA, IL12A, IL12B, IL13, IRGM, MASP1, TRAF3, IL17A, ILF3, CEBPB, CD244, HLA-B, AICDA, HLA-C, IDO1, TAGAP, HLA-DPA1, HLA-DPB1, HLA-DQA1, MAPKAPK2, HLA-DQB1, HLA-DRA, HLA-DRB1, MBL2, TNFRSF14, GATA3, PSMB10, CD55, PTPN22, CD46, BCL2, DEFB103B, PTAFR, PTGER4, IL1RL2, CCL26, CD209, STAT5A, BID, DEFB1, DEFB4A, CFD, PTPN6, SLAMF6, FCGR2B, CARD9, BTK, KLRF2, MIF, IL21, PLA2G2A, TOLLIP, C1R, C1S, C4A, C4BPA, CCL7, CCL11, CCL13, BATF3, CCL15, CCL16, C6, C7, CCL18, C8A, CCL19, C8B, CCL20, CCL22, C9, CCL24, CXCL11, XCL1, CX3CL1, NOS2, CXCL12, VCAM1, SELE, RAG2, LILRA2, CLEC6A, BCL2L11, ATG7, ITLN1, ICAM2, ICAM3, IRF8, CXCL13, CASP3, RELA, RELB, TLR9, PPBP, CFI, CR2, IL23A, IFNA2, EDNRB, LGALS3, IFNAR1, IFNB1, IFNG, CSF1R, CSF2, CD8A, CSF2RB, MS4A1, EGR1, SIGIRR, CD80, CD86, TIRAP, CD40, IRAK4, CD44, CD74, CD79B, LTA, HAMP, MAPK11, IL1RAP, IL2, IL4, IL4R, CTSS, IL6, IL6R, IL27, MASP2"], ["GO:0034097", "BP", "Response to cytokine", "3.04E − 80", "2.61E − 77", "2.39E − 76", "1.57E − 76", "120", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, IRGM, IL16, TRAF3, TNFRSF9, IL17A, CEBPB, HLA-B, PDGFB, HLA-C, TNFSF12, SPP1, HLA-DPA1, HLA-DPB1, HLA-DQA1, MAPKAPK2, HLA-DQB1, HLA-DRA, HLA-DRB1, TNFRSF14, GATA3, ETS1, PSMB10, BCL2, PTAFR, IL1RL2, CCL26, IL17F, STAT5A, STAT6, TNFRSF4, PTPN6, IL22RA2, NFIL3, BTK, MIF, IL21, TOLLIP, CCL7, CCR6, CCL11, CCL13, CCR8, CCL15, MME, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, KIT, CX3CL1, NOS2, CXCL12, VCAM1, IL19, SELE, SELPLG, CCR10, XCR1, TCF7, ZEB1, FN1, IRF8, CXCL13, CASP3, RELA, RELB, PPBP, IL23A, S1PR1, IFNA2, TFRC, IFNAR1, IFNB1, IFNG, LIF, CSF1R, CSF2, CSF2RB, CSF3R, EBI3, EGR1, SIGIRR, IL20, CD80, CD86, TIRAP, IL22, CD40, IRAK4, CD44, TNFRSF13C, CD74, LTA, RORC, HAMP, MAPK11, IL1RAP, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7, IL26, IL27, CXCR1, IL9, CXCR2"], ["GO:0042110", "BP", "T cell activation", "8.30E − 63", "2.25E − 60", "2.06E − 59", "4.28E − 59", "77", "IL10, IL12A, IL12B, CEBPB, CD244, IDO1, HLA-DMA, HLA-DMB, HLA-DPA1, HLA-DPB1, HLA-DQA1, TNFRSF14, GATA3, PSMB10, CD55, PTPN22, CD46, BCL2, CD83, PTGER4, IL1RL2, CD209, STAT5A, STAT6, TNFRSF4, EOMES, PTPN6, SLAMF6, FCGR2B, IL21, CCR6, CCL19, CCL20, XCL1, KIT, CXCL12, VCAM1, RAG1, RAG2, DPP4, ICOSLG, TCF7, ZEB1, CASP3, AIRE, BTLA, RELB, GPR183, LCK, IL23A, IFNA2, LGALS3, TFRC, IFNAR1, IFNB1, IFNG, CD3E, CD8A, THY1, TIGIT, EBI3, EGR1, CD80, CD86, CD44, CD48, TNFRSF13C, CD74, RORC, CTLA4, IL2, IL4, IL4R, IL6, IL6R, IL7, IL27"], ["GO:0001816", "BP", "Cytokine production", "8.07E − 58", "1.81E − 55", "1.65E − 54", "4.16E − 54", "87", "IL10, IL12A, IL12B, IL13, TRAF3, TNFRSF9, IL17A, CEBPB, CD244, IDO1, HLA-DPA1, HLA-DPB1, MAPKAPK2, IL17B, MBP, TNFRSF14, GATA3, CD55, PTPN22, CD46, PTAFR, CD83, PTGER4, IL1RL2, IL17F, STAT5A, STAT6, TNFRSF4, EOMES, PTPN6, SLAMF6, FCER1A, FCGR2B, CARD9, BTK, KLRF2, MIF, IL21, CCL19, CCL20, XCL1, KIT, CX3CL1, NOS2, IL19, ICOSLG, LILRA2, CLEC6A, FN1, IRF8, AIRE, RELA, RELB, TLR9, IL23A, IFNA2, IFNAR1, IFNB1, IFNG, CD3E, CSF1R, CSF2, TIGIT, EBI3, EGR1,SIGIRR, CD80, CD86, TIRAP, CD34, CD40, IRAK4, TNFRSF13C, CD74,LTA, RORC, MAPK11, IL1RAP, IL2, IL4, IL4R, IL6, IL6R, IL7, IL26, IL27, IL9"], ["GO:0002694", "BP", "Regulation of leukocyte activation", "7.07E − 57", "1.52E − 54", "1.39E − 53", "3.65E − 53", "77", "IL10, IL12A, IL12B, IL13, CEBPB, CD244, IDO1, HLA-DMA, HLA-DMB, HLA-DPA1, HLA-DPB1, HLA-DQA1, CTSC, TNFRSF14, GATA3, CD55, PTPN22, CD46, BCL2, PTAFR, CD83, IL1RL2, CD209, STAT5A, STAT6, TNFRSF4, PTPN6, FCER1A, FCGR2B, BTK, MIF, IL21, CCR6, CCL19, CCL20, XCL1, CX3CL1, VCAM1, RAG1, DPP4, ICOSLG, ZEB1, CASP3, BTLA, GPR183, TLR9, LCK, IL23A, IFNA2, LGALS3, TFRC, IFNB1, IFNG, CD3E, THY1, CD19, TIGIT, EBI3, CD22, CD80, CD86, TIRAP, CD40, CD44, TNFRSF13C, CD74, RORC, CTLA4, HAMP, IL2, IL4, IL4R, IL5, IL6, IL6R, IL7, IL27"], ["GO:0006954", "BP", "Inflammatory response", "5.64E − 55", "1.12E − 52", "1.02E − 51", "2.91E − 51", "82", "IL10, IL12B, IL13, IRGM, IL17A, CEBPB, IDO1, SPP1, MAPKAPK2, CTSC, IL17B, MBL2, GATA3, ETS1, PTAFR, PLA2G2E, PTGER4, IL1RL2, CCL26, IL17F, STAT5A, TNFRSF4, IL22RA2, FCER1A, FCGR2B, BTK,MIF, IL21, PLA2G2A, TOLLIP, C4A, CCL7, CCR6,CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, KIT, CX3CL1, NOS2, VCAM1, SELE, XCR1, FN1, NT5E, CXCL13, RELA, RELB, TLR9, PPBP, IL23A, IFNA2, EDNRB, IFNG, CSF1R, SIGIRR, IL20, TIRAP, IL22, CD40, CD44, LTA, HAMP, IL1RAP, IL2, CDH5, IL4, IL4R, IL5, CTSS, IL6, IL6R, IL27, IL9, CXCR2"], ["GO:0007155", "BP", "Cell adhesion", "3.87E − 42", "3.50E − 40", "3.20E − 39", "2.00E − 38", "91", "IL10, IL12A, IL12B, CEBPB,CD244, IDO1, HLA-DMA, HLA-DMB, SPP1, HLA-DPA1, HLA-DPB1, HLA-DQA1, PECAM1, MBP, TNFRSF14, GATA3, ETS1, CD55, PTPN22, CD46, BCL2, PTAFR, CD83, ITGAE, PTGER4, IL1RL2, CD209, PTK2, STAT5A, PTPN6, FCGR2B, IL21, PLAU, CCL11, CCR8, CCL19, XCL1, KIT, MAP4K4, CX3CL1, CXCL12, VCAM1, SELE, SELPLG, RAG1, DPP4, ICOSLG, VTN, FN1, BCL2L11, NT5E, ICAM2, ICAM3, ICAM4, CXCL13, CASP3, RELA, BTLA, LCK, IL23A, S1PR1, IFNA2, LGALS3, TFRC, IFNB1, IFNG, TGFBI, ARHGDIB, CD3E, THY1, CD9, CSF3R, TIGIT, EBI3, CD22, CD80, CD86, ICAM5, CD34, CD44, TNFRSF13C, CD74, CTLA4,IL1RAP, IL2, CDH5, IL4, IL4R, IL6, IL6R, IL7"], ["GO:0009986", "CC", "Cell surface", "8.40E − 48", "1.04E − 45", "6.72E − 45", "3.09E − 45", "83", "IL12A, IL12B, IL13, IL13RA1, TNFRSF9, IL17A, CD244, HLA-B, PDGFB, HLA-C, HLA-DMA, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DRA, HLA-DRB1, PECAM1, MBL2, MBP, TNFRSF14, CD55, CD46, TNFRSF10C, CD83, ITGAE, CD209, TNFRSF4, FCER1A, FCGR2B, FCGRT, MIF, PLAU, CCR6, CCR8, MME, KIT, CX3CL1, CXCL12, VCAM1, CCR10, DPP4, ICOSLG, XCR1, NT5E, BTLA, CR2, S1PR1, LGALS3, TFRC, IFNG, TGFBR1, CD1A, CD3E, CSF1R, CD8A, THY1, CD9, CSF3R, CD19, TIGIT, MS4A1, EBI3, CD22, CD80, CD86, CD34, CD40, CD44, CD48, TNFRSF13C, CD59, CD74, CD79A, CD79B, RORC, CTLA4, CDH5, IL4, CTSS, IL6, IL6R, CXCR1, CXCR2"], ["GO:0097478", "CC", "Leaflet of membrane bilayer", "8.80E − 48", "1.04E − 45", "6.72E − 45", "3.24E − 45", "70", "IL12B, IL13, IL13RA1, TRAF3, TNFRSF9, IL17A, CD244, HLA-B, HLA-C, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, PECAM1, TNFRSF14, PTPN22, CD83, ITGAE, CD209, TNFRSF4, FCER1A, FCGR2B, FCGRT, CCR6, CCR8, KIT, CXCL12, VCAM1, CCR10, ICOSLG, XCR1, BTLA, LCK, CR2, S1PR1, LGALS3, TFRC, IFNG, CD1A, CD3E, BCAP31, CD8A, THY1, CD9, CSF3R, CD19, MS4A1, EBI3, CD22, CD80, CD86, CD34,CD40, CD44, CD48, TNFRSF13C, CD59,CD74, CD79A, CD79B, RORC, CTLA4, CDH5, IL4, IL6, IL6R, CXCR1, CXCR2"], ["GO:0031226", "CC", "Intrinsic component of plasma membrane", "4.10E − 24", "3.01E − 22", "1.96E − 21", "1.51E − 21", "75", "IL13RA1, TRAF3, TNFRSF9,TNFSF12, HLA-DPA1, HLA-DQA1, HLA-DRA, CD46,PTAFR, CD83, ITGAE, IL1RL2, TNFRSF4, CD82, SLAMF6,FCAR, FCER1A, PIGR, FCGR2B, KLRF2, TOLLIP, CCR6, CCR8, MME, C6, C7, C8A, C8B, C9, KIT, VCAM1, SELE, SELPLG, CCR10, ICOSLG, XCR1, LILRA2, ICAM2, ICAM3, ICAM4, BTLA, GPR183, S1PR1, SLC2A1, EDNRB, TFRC, IFNAR1, TGFBR1,CD1A, CD3E, BCAP31, CSF1R, CD8A, THY1, CSF2RB, CD9, CSF3R, CD19, MS4A1, EBI3, CD22, ICAM5, CD34, CD40, CD44, CD48, CD59, CD74, CD79B, CTLA4, IL1RAP, IL4R, IL6, IL6R, CXCR2"], ["GO:0098589", "CC", "Membrane region", "7.35E − 11", "1.93E − 09", "1.25E − 08", "2.70E − 08", "24", "PECAM1, CD55, CD46, STAT6, FCER1A, BTK, MME, SELE, SELPLG, DPP4, ITLN1, CASP3, LCK, S1PR1, SLC2A1, EDNRB, TGFBR1, CD1A, CD8A, THY1, CD19, MS4A1, CD48, CD79A"], ["GO:0043235", "CC", "Receptor complex", "3.10E − 10", "6.71E − 09", "4.35E − 08", "1.14E − 07", "26", "IL12B, IL13RA1, TRAF3, ITGAE, PTPN6, PIGR, TOLLIP, KIT, ITLN1, CR2, TFRC, TGFBR1, CD3E, CSF1R, CD8A, CSF2RB, CSF3R, EBI3, CD40, CD44, CD74, CD79A, CD79B, IL4R, IL6, IL6R"], ["GO:0030141", "CC", "Secretory granule", "3.67E − 07", "5.20E − 06", "3.37E − 05", "1.35E − 04", "29", "PDGFB, CTSC, PECAM1, CD55, CD46, PTAFR, CFD, PTPN6, FCAR, PIGR, FCGR2A, MIF, PLA2G2A, TOLLIP, PLAU, MME, KIT, GPI, LILRA3, FN1, ATG7, PPBP, LGALS3, CD9, CD44, CD59, CTSS, CXCR1, CXCR2"], ["GO:0005764", "CC", "Lysosome", "1.31E − 06", "1.49E − 05", "9.69E − 05", "4.81E − 04", "25", "IL13, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, CTSC, HLA-DRB1, FCER1A, PIGR, BTK, TOLLIP,KIT, DPP4, TLR9, IFNAR1, CD34, CD74, IL4, IL4R, CTSS, CXCR2"], ["GO:0005794", "CC", "Golgi apparatus", "4.18E − 03", "2.00E − 02", "1.30E − 01", "1.00E + 00", "31", "IRGM, HLA-B, PDGFB, HLA-C,SPP1, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, CTSC, HLA-DRB1, CD55, CD46, DEFB103B, DEFB1,DEFB4A, MME, VCAM1, DPP4, VTN, TLR9, SLC2A1, TGFBI, BCAP31, CD44, CD59, CD74, CD79B, B3GAT1, CTLA4"], ["GO:0048471", "CC", "Perinuclear region of cytoplasm", "2.87E − 02", "8.46E − 02", "5.49E − 01", "1.00E + 00", "16", "TNFSF12, SPP1, PTPN22, BCL2, BTK, PLA2G2A, TOLLIP, CX3CL1, NOS2, SELE, ATG7,TFRC, TRAF4, BCAP31, CD34, CTLA4"], ["GO:0044297", "CC", "Cell body", "9.03E − 02", "2.08E − 01", "1.00E + 00", "1.00E + 00", "14", "PDGFB, MBP, PTGER4, FCGR2B, C4A, MME, CX3CL1, CASP3,IFNG, CD3E, THY1, CD22, CD40, IL6R"], ["GO:0030054", "CC", "Cell junction", "9.70E − 02", "2.20E − 01", "1.00E + 00", "1.00E + 00", "21", "PECAM1, CD46, PTK2, PTPN6, C4A, PLAU, MME, KIT, MAP4K4, DPP4, LCK, SLC2A1, TGFBR1, TRAF4, CD3E, THY1, CD9, CD44,CD59, HAMP, CDH5"], ["GO:0005126", "MF", "Cytokine receptor binding", "8.37E − 54", "6.01E − 51", "4.30E − 50", "6.01E − 51", "59", "IL10, IL12A, IL12B, IL13, TRAF3, TNFSF12, GATA3, DEFB103B, CCL26, IL17F, BID, DEFB1, DEFB4A, MIF, IL21, TOLLIP, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, CXCL13, CASP3, TLR9, PPBP, IL23A, IFNA2, IFNB1, IFNG, TGFBR1, LIF, TRAF4, CSF2, EBI3, IL20, IL22,IRAK4, CD44, LTA, IL1RAP, IL2,IL3, CDH5,IL4, IL5, IL6, IL6R, IL7, IL27, IL9"], ["GO:0005102", "MF", "Signaling receptor binding", "3.78E − 49", "9.05E − 47", "6.48E − 46", "2.72E − 46", "108", "IL10, IL12A, IL12B, IL13, IL16, TRAF3, IL17A, CEBPB, CD244, HLA-B, PDGFB, HLA-C, TNFSF12, HLA-DOB, SPP1, HLA-DPA1, HLA-DQA1, HLA-DQB1, HLA-DRA, IL17B, MBL2, GATA3, DEFB103B, CCL26, IL17F, PTK2, BID, DEFB1, DEFB4A, PTPN6, PIGR, MIF, IL21, TOLLIP, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, VCAM1, IL19, SELPLG, GPI, DPP4, ICOSLG, VTN, FN1, ATG7, ICAM2, ICAM3, ICAM4, CXCL13, CASP3, TLR9, LCK, PPBP, IL23A, S1PR1, IFNA2, EDNRB, LGALS3, IFNB1, IFNG, TGFBI, TGFBR1, LIF, TRAF4, CD3E,BCAP31, CSF2, CD8A, THY1, CD9, TIGIT, MS4A1, EBI3, CD22, IL20, CD86, ICAM5, TIRAP, IL22, IRAK4, CD44, CD74, LTA, HAMP, IL1RAP, IL2, IL3, CDH5, IL4, IL5, IL6, IL6R, IL7, IL26, IL27, IL9"], ["GO:0030545", "MF", "Chemokine receptor binding", "2.63E − 22", "2.36E − 20", "1.69E − 19", "1.89E − 19", "20", "DEFB103B, CCL26, DEFB1, DEFB4A, CCL7, CCL11,CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, CXCL13, PPBP"], ["GO:0098772", "MF", "Molecular function regulator", "1.42E − 18", "6.80E − 17", "4.86E − 16", "1.02E − 15", "71", "IL10, IL12A, IL12B, IL13, IRGM, IL16, IL17A, PDGFB, TNFSF12, SPP1, TAGAP, CTSC, IL17B, CD46, BCL2, DEFB103B, CCL26, IL17F, EOMES, DEFB4A, MIF, IL21, C4A, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, NOS2, CXCL12, IL19, GPI, FN1, CXCL13, CASP3, SKI, PPBP, IL23A, IFNA2, LGALS3, IFNB1, IFNG, LIF, ARHGDIB, TRAF4, CSF2, THY1, EBI3, IL20, TIRAP, IL22, LTA, HAMP, IL2, IL3, IL4, IL5, IL6, IL6R, IL7, IL26,IL27, IL9"], ["GO:0004888", "MF", "Transmembranesignaling receptor activity", "2.09E − 12", "8.81E − 11", "6.31E − 10", "1.50E − 09", "50", "IL10RA, IL12B, IL13RA1, HLA-DOB, HLA-DPA1, HLA-DQA1, HLA-DQB1, HLA-DRA, TNFRSF14, TNFRSF10C, PTAFR, PTGER4, IL1RL2, TNFRSF4, PTPN6, IL22RA2, FCER1A, PIGR, FCGR2B, CCR6, CCR8, KIT, KLRB1, LILRB5, SELE, CCR10, XCR1, LILRA1, GPR183, TLR9, CR2, S1PR1, EDNRB, IFNAR1, IFNG, TGFBR1, CD3E, CSF1R, CSF2RB, CSF3R, EBI3, CD44, CD74, CD79A, CD79B, IL1RAP, IL4R, IL6R, CXCR1, CXCR2"], ["GO:0001664", "MF", "G protein-coupled receptor binding", "3.80E − 12", "1.52E − 10", "1.08E − 09", "2.73E − 09", "23", "DEFB103B, CCL26, DEFB1, DEFB4A, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, CXCL13, PPBP, S1PR1, EDNRB, IL2"], ["GO:0044877", "MF", "Protein-containing complex binding", "1.24E − 11", "4.46E − 10", "3.19E − 09", "8.92E − 09", "48", "PDGFB, HLA-DMA, HLA-DMB, HLA-DOB, SPP1, HLA-DRA, HLA-DRB1, PTK2, FCAR, FCER1A, PIGR, FCGR2A, FCGR2B, FCGRT, MIF, C8A, C8B, CX3CL1, CXCL12, VCAM1, DPP4, LILRA2, VTN, FN1, BCL2L11, ICAM2, ICAM3, ICAM4, CASP3, RELA, LCK, IFNA2, LGALS3, IFNB1, TGFBI, TGFBR1, CD3E, BCAP31, CD8A, THY1, CD9, MS4A1, CD22, ICAM5, CD44, CD74, CDH5, CTSS"], ["GO:0042802", "MF", "IDENTICAL protein binding", "1.81E − 07", "3.93E − 06", "2.81E − 05", "1.30E − 04", "51", "IL12B, MASP1, CEBPB, AICDA, PDGFB, CTSC, PECAM1, ETS1, BCL2, IL17F, PTK2, STAT6, DEFB1, CARD9, BTK, KLRF2, MIF, C1S, MME, XCL1, KIT, NOS2, RAG1, DPP4, ICOSLG, TCF4, IKZF2, VTN, FN1, ATG7, ITLN1, AIRE, RELA, RELB, TLR9, LCK, CR2, SLC2A1, LGALS3, TFRC, TRAF4, CD3E, CSF1R, CD8A, TIGIT, TIRAP, CD74, CD79A, CD79B, CDH5, IL6R"], ["GO:0046983", "MF", "Protein dimerization activity", "6.79E − 07", "1.19E − 05", "8.51E − 05", "4.88E − 04", "42", "IL10, IL12A, IL12B, MASP1, CEBPB, PDGFB, HLA-DQA1, PECAM1, GATA3, BCL2, IL17F, BID, CARD9, KLRF2, CCL11, MME, TAL1, XCL1, KIT, NOS2, RAG1, DPP4, TCF4, IKZF2, BCL2L11, ATG7, CXCL13, RELA, TLR9, CR2, LGALS3, TFRC, TGFBR1, TRAF4, CD3E, CSF1R, CD8A, TIRAP, CD79A, CD79B, CDH5, IL6R"], ["GO:0016301", "MF", "Kinase activity", "1.16E − 05", "1.54E − 04", "1.10E − 03", "8.29E − 03", "40", "IL12B, IRGM, PDGFB, MAPKAPK2, PTPN22, PTK2, TNFRSF4, PTPN6, FCER1A, BTK, MIF, CCL19, TAL1, KIT, MAP4K4, NOS2, GPI, DUSP4, CASP3, TLR9, LCK, IL23A, IFNG, TGFBR1, TRAF4, CSF1R, THY1, CD19, EGR1, TIRAP, CD40, IRAK4, CD44, CD74, MAPK11, IL2, IL3, IL4, IL6, IL6R"]], "row_count": 32, "column_count": 9, "numeric_cells": 217, "header_rows": 1, "locator": "section[14]/table-wrap[2]#Tab5"}}, {"id": "asset:table:pmid:33251083:6", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:72eaeba363b965fe7e952d91d5d134b882754beaa91740a8a3be9d2804db13fb", "bytes": 16979, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[15]/table-wrap[1]#Tab6", "version": null, "note": "Topology table for up and down regulated genes", "structure": {"pmcid": "PMC7679428", "section_index": 7, "section_title": "PPI network construction and module analysis", "row_count": 277, "column_count": 7}, "table": {"label": "Table 6", "caption": "Topology table for up and down regulated genes", "rows": [["Regulation", "Node", "Degree", "Betweenness", "Stress", "Closeness", "Clustering Coefficient"], ["Up", "TP53", "682", "0.308256", "69419762", "0.44613", "0.001042"], ["Up", "HRAS", "543", "0.243425", "36147274", "0.454702", "0.003568"], ["Up", "CTNNB1", "454", "0.17049", "60805652", "0.403018", "0.002042"], ["Up", "FYN", "396", "0.117564", "12570856", "0.436236", "0.010907"], ["Up", "ABL1", "362", "0.118179", "7631538", "0.470883", "0.015228"], ["Up", "JAK2", "258", "0.054758", "7164820", "0.434802", "0.021748"], ["Up", "STAT3", "253", "0.05294", "16470742", "0.398767", "0.02108"], ["Up", "JAK1", "223", "0.032981", "6336566", "0.40235", "0.019876"], ["Up", "TRAF6", "216", "0.074546", "12176648", "0.395301", "0.010207"], ["Up", "STAT1", "213", "0.045072", "12845532", "0.387307", "0.023031"], ["Up", "TRAF2", "171", "0.047572", "11238720", "0.357837", "0.007981"], ["Up", "ZAP70", "153", "0.018814", "3346658", "0.375226", "0.028294"], ["Up", "IKBKB", "140", "0.040639", "5153454", "0.403521", "0.017575"], ["Up", "MX1", "125", "0.057134", "6475242", "0.352549", "0.002194"], ["Up", "STAT5B", "118", "0.012758", "2934924", "0.377415", "0.057801"], ["Up", "ZBTB16", "105", "0.029011", "4339392", "0.371064", "0.00696"], ["Up", "GP1BB", "104", "0.024662", "2308816", "0.350596", "0.009335"], ["Up", "RUNX1", "95", "0.021204", "3579930", "0.370309", "0.010526"], ["Up", "C1QBP", "89", "0.043687", "7011558", "0.334675", "0"], ["Up", "TLR2", "85", "0.019615", "2401022", "0.374839", "0.034734"], ["Up", "SOCS1", "85", "0.019595", "1846156", "0.398713", "0.072829"], ["Up", "SMAD5", "82", "0.024208", "4462604", "0.336687", "0.003011"], ["Up", "ITGB2", "72", "0.025976", "3349086", "0.351061", "0.008607"], ["Up", "IKZF1", "72", "0.011714", "1722502", "0.373157", "0.034038"], ["Up", "CCND3", "71", "0.025956", "2361424", "0.357661", "0.008048"], ["Up", "ATG5", "60", "0.020131", "2294688", "0.333219", "0.00678"], ["Up", "IFIH1", "59", "0.023459", "2059722", "0.333945", "0.001753"], ["Up", "STAT4", "58", "0.002561", "797810", "0.366902", "0.082275"], ["Up", "PSMB9", "55", "0.0248", "2740768", "0.310739", "0"], ["Up", "IKZF3", "47", "0.005026", "756292", "0.361346", "0.053654"], ["Up", "GFI1", "46", "0.007563", "811180", "0.357266", "0.013527"], ["Up", "IRF7", "44", "0.010411", "1198488", "0.338804", "0.008457"], ["Up", "MAP4K1", "44", "0.006432", "851692", "0.348957", "0.046512"], ["Up", "CD247", "43", "0.00724", "710792", "0.349292", "0.058693"], ["Up", "LCP2", "41", "0.003353", "442356", "0.338331", "0.07439"], ["Up", "CCR5", "39", "0.010719", "942222", "0.343359", "0.043185"], ["Up", "IRF5", "34", "0.006222", "736764", "0.339277", "0.012478"], ["Up", "GZMB", "29", "0.01009", "1297184", "0.313584", "0"], ["Up", "IL2RG", "27", "0.005284", "347620", "0.3463", "0.071225"], ["Up", "TBX21", "23", "0.003781", "493896", "0.328704", "0.023715"], ["Up", "XBP1", "21", "0.004344", "440004", "0.329933", "0"], ["Up", "HLA-A", "19", "0.007447", "822622", "0.311637", "0"], ["Up", "MAP4K2", "18", "0.002038", "190802", "0.334636", "0.045752"], ["Up", "CCR1", "18", "0.004542", "722956", "0.323912", "0.019608"], ["Up", "IFNAR2", "17", "0.003686", "214358", "0.335872", "0.169118"], ["Up", "ITGAL", "17", "0.004258", "302784", "0.285588", "0.058824"], ["Up", "ATG10", "16", "0.00303", "204222", "0.278618", "0.075"], ["Up", "CEACAM1", "15", "0.003567", "815206", "0.308991", "0"], ["Up", "CLEC7A", "13", "0.006223", "422114", "0.302253", "0"], ["Up", "CUL9", "10", "0.001917", "66468", "0.352806", "0.111111"], ["Up", "SERPING1", "10", "0.004857", "805696", "0.203225", "0"], ["Up", "NLRP3", "10", "0.002325", "208526", "0.304371", "0"], ["Up", "LTB4R", "9", "0.002812", "970594", "0.242059", "0"], ["Up", "GBP1", "9", "0.001571", "66852", "0.307489", "0"], ["Up", "LILRB2", "9", "0.004803", "191694", "0.287677", "0"], ["Up", "CD99", "8", "0.002792", "99752", "0.324129", "0"], ["Up", "KLRK1", "7", "0.003445", "544176", "0.26256", "0"], ["Up", "BST2", "7", "1.93E − 04", "36836", "0.324273", "0"], ["Up", "KLRD1", "7", "0.001389", "97132", "0.22517", "0.047619"], ["Up", "KLRC1", "5", "0.003221", "307724", "0.286234", "0.1"], ["Up", "IL18R1", "4", "0.00118", "348338", "0.245924", "0"], ["Up", "PDCD1", "4", "0.001374", "55018", "0.303894", "0.166667"], ["Up", "SLAMF7", "4", "0.00206", "191070", "0.233272", "0"], ["Up", "C2", "4", "0.001446", "96444", "0.245447", "0"], ["Up", "IFI35", "3", "6.93E − 04", "23710", "0.323301", "0"], ["Up", "LAG3", "2", "4.23E − 06", "1074", "0.245695", "0"], ["Up", "IL18RAP", "2", "1.95E − 04", "52194", "0.233609", "0"], ["Down", "MAPK11", "421", "0.179413", "26118522", "0.388195", "0.003744"], ["Down", "RELA", "285", "0.126824", "20931198", "0.37804", "0.004645"], ["Down", "LCK", "267", "0.108492", "11305268", "0.405534", "0.014108"], ["Down", "KIT", "221", "0.051071", "10158794", "0.36783", "0.015014"], ["Down", "EGR1", "195", "0.060886", "6334914", "0.384414", "0.016178"], ["Down", "ILF3", "179", "0.093546", "7805892", "0.330116", "3.14E − 04"], ["Down", "CASP3", "175", "0.070326", "10842834", "0.355181", "0.005123"], ["Down", "PTK2", "153", "0.049652", "8738870", "0.356704", "0.005246"], ["Down", "PTPN6", "150", "0.044684", "5323296", "0.365645", "0.021477"], ["Down", "BCL2", "150", "0.062256", "5772430", "0.365862", "0.009128"], ["Down", "BTK", "137", "0.022999", "3449618", "0.35359", "0.019429"], ["Down", "STAT5A", "126", "0.024378", "5096524", "0.35745", "0.027429"], ["Down", "TGFBR1", "123", "0.048955", "6050368", "0.349257", "0.007464"], ["Down", "CSF1R", "117", "0.01327", "3411424", "0.344835", "0.005894"], ["Down", "FN1", "116", "0.052141", "5201654", "0.335331", "0.003148"], ["Down", "TCF4", "115", "0.044569", "5794596", "0.333586", "0.005492"], ["Down", "TRAF3", "113", "0.038869", "4088284", "0.341886", "0.010588"], ["Down", "STAT6", "102", "0.026319", "3212830", "0.363486", "0.039216"], ["Down", "GATA3", "97", "0.03064", "3006348", "0.350689", "0.018471"], ["Down", "IRAK4", "90", "0.015953", "2526624", "0.344064", "0.010986"], ["Down", "TCF7", "90", "0.029254", "4190222", "0.323796", "9.99E − 04"], ["Down", "ATG7", "88", "0.032475", "4557368", "0.323761", "0"], ["Down", "PSMB10", "86", "0.037084", "3948650", "0.316536", "0"], ["Down", "EGR2", "78", "0.014472", "2942228", "0.323966", "0.002331"], ["Down", "CEBPB", "77", "0.01563", "2080316", "0.347208", "0.028708"], ["Down", "TLR9", "75", "0.01613", "2504516", "0.335623", "0.017658"], ["Down", "ETS1", "74", "0.015119", "2229504", "0.345493", "0.023695"], ["Down", "MBP", "69", "0.02034", "1946892", "0.33211", "0.008099"], ["Down", "CD40", "63", "0.012367", "1565636", "0.343144", "0.030722"], ["Down", "PTPN22", "63", "0.005103", "648768", "0.333009", "0.039939"], ["Down", "CXCL13", "62", "0.033409", "4616616", "0.255924", "0.002644"], ["Down", "CD44", "61", "0.027234", "2621678", "0.352941", "0.016393"], ["Down", "DUSP4", "56", "0.005964", "877004", "0.343106", "0.046753"], ["Down", "TOLLIP", "55", "0.020841", "1681614", "0.32948", "0.011448"], ["Down", "TRAF4", "54", "0.017367", "1322968", "0.327447", "0.012579"], ["Down", "TFRC", "51", "0.020865", "2030850", "0.323932", "7.84E − 04"], ["Down", "TAL1", "49", "0.012074", "1294452", "0.327273", "0.02551"], ["Down", "BATF3", "48", "0.009925", "1237560", "0.309471", "0.011525"], ["Down", "SKI", "47", "0.009912", "1441494", "0.325026", "0.010176"], ["Down", "MAP4K4", "46", "0.00723", "923942", "0.334966", "0.025121"], ["Down", "ARHGDIB", "43", "0.008007", "998356", "0.325267", "0.00443"], ["Down", "BID", "40", "0.007734", "665116", "0.336026", "0.046154"], ["Down", "BCL2L11", "39", "0.006742", "718322", "0.327935", "0.032389"], ["Down", "NOS2", "39", "0.012743", "915032", "0.332218", "0.010796"], ["Down", "AICDA", "38", "0.016444", "2864544", "0.288094", "0"], ["Down", "GPI", "37", "0.009895", "1400722", "0.322202", "0"], ["Down", "CSF2RB", "37", "0.005071", "681430", "0.345571", "0.100601"], ["Down", "TIRAP", "37", "0.009595", "1070880", "0.324", "0.033033"], ["Down", "CD9", "36", "0.01001", "838100", "0.302685", "0.019048"], ["Down", "CDH5", "35", "0.00845", "737334", "0.306177", "0.013445"], ["Down", "AIRE", "35", "0.010893", "2140272", "0.292753", "0"], ["Down", "CD82", "32", "0.008605", "911074", "0.323659", "0.020161"], ["Down", "IFNAR1", "31", "0.006943", "536824", "0.340902", "0.062366"], ["Down", "CD3E", "30", "0.006779", "602042", "0.338614", "0.078161"], ["Down", "LGALS3", "30", "0.009645", "633882", "0.302536", "0"], ["Down", "VTN", "30", "0.009755", "750034", "0.299445", "0.006897"], ["Down", "CD8A", "29", "0.008368", "709958", "0.334638", "0.029557"], ["Down", "CSF3R", "28", "0.008229", "711320", "0.334093", "0.029101"], ["Down", "EOMES", "28", "0.005201", "513270", "0.277597", "0.018519"], ["Down", "VCAM1", "28", "0.008841", "718322", "0.31732", "0.010582"], ["Down", "ZEB1", "27", "0.006122", "1257304", "0.288851", "0"], ["Down", "MME", "27", "0.009061", "1835908", "0.290624", "0.014245"], ["Down", "MIF", "27", "0.00826", "611016", "0.321596", "0.005698"], ["Down", "IKZF2", "26", "0.003358", "390862", "0.3129", "0"], ["Down", "MAPKAPK2", "26", "0.004801", "451358", "0.310909", "0.024615"], ["Down", "PLAU", "25", "0.008975", "593824", "0.317844", "0.01"], ["Down", "DPP4", "25", "0.010538", "1418468", "0.265231", "0.006667"], ["Down", "RORC", "25", "0.00722", "1661398", "0.278729", "0.013333"], ["Down", "CD55", "24", "0.010279", "705586", "0.303102", "0"], ["Down", "IL4R", "24", "0.00238", "270352", "0.331181", "0.083333"], ["Down", "CD19", "23", "0.001702", "211728", "0.304301", "0.090909"], ["Down", "IRF8", "23", "0.005195", "372574", "0.329904", "0.019763"], ["Down", "IL4", "23", "0.004905", "441962", "0.296246", "0.019763"], ["Down", "RELB", "23", "0.003464", "286340", "0.326336", "0.055336"], ["Down", "PAX5", "22", "0.002896", "300204", "0.291726", "0.021645"], ["Down", "CXCR2", "22", "0.006344", "1097670", "0.26098", "0.047619"], ["Down", "IL16", "22", "0.008141", "455702", "0.300821", "0"], ["Down", "SPP1", "21", "0.005095", "320668", "0.307124", "0.014286"], ["Down", "THY1", "21", "0.008614", "468640", "0.309285", "0.004762"], ["Down", "SLC2A1", "20", "0.00547", "544898", "0.316244", "0"], ["Down", "EDNRB", "20", "0.006473", "488214", "0.313729", "0"], ["Down", "SELE", "20", "0.005852", "411150", "0.300615", "0.031579"], ["Down", "HLA-DRA", "18", "0.004735", "398954", "0.319992", "0.052288"], ["Down", "CD79A", "18", "0.00478", "297512", "0.338726", "0.176471"], ["Down", "HLA-B", "17", "0.006176", "428434", "0.315111", "0.022059"], ["Down", "BCAP31", "17", "0.005172", "568664", "0.289476", "0.058824"], ["Down", "IL1RAP", "17", "0.003059", "257852", "0.322101", "0.088235"], ["Down", "PDGFB", "16", "0.003308", "533330", "0.27399", "0"], ["Down", "S1PR1", "16", "0.002256", "404754", "0.320025", "0"], ["Down", "CD46", "15", "0.004006", "360234", "0.31814", "0.047619"], ["Down", "RAG1", "15", "0.002698", "229148", "0.267304", "0.019048"], ["Down", "CD22", "15", "0.003395", "414458", "0.289123", "0.07619"], ["Down", "POU2F2", "14", "0.00252", "256428", "0.313506", "0"], ["Down", "TNFRSF14", "14", "0.002863", "205148", "0.290131", "0.054945"], ["Down", "FCGR2B", "14", "0.001419", "233096", "0.299854", "0.087912"], ["Down", "CSF2", "14", "0.001964", "189924", "0.271764", "0.076923"], ["Down", "SELPLG", "14", "0.004641", "618406", "0.266933", "0.010989"], ["Down", "IL10", "13", "0.001286", "131502", "0.275387", "0.025641"], ["Down", "CCL7", "13", "0.002891", "346838", "0.240789", "0"], ["Down", "CD79B", "13", "3.06E − 04", "78608", "0.337796", "0.423077"], ["Down", "HLA-C", "13", "0.003625", "407006", "0.310407", "0.025641"], ["Down", "IL6R", "13", "0.004275", "289876", "0.288689", "0.051282"], ["Down", "IL17A", "13", "0.002334", "388710", "0.280328", "0.025641"], ["Down", "FCGR2A", "13", "0.002143", "252800", "0.318403", "0"], ["Down", "LTA", "12", "0.002886", "476206", "0.257315", "0"], ["Down", "CXCL12", "12", "0.005496", "372448", "0.27655", "0.030303"], ["Down", "CTSS", "12", "0.00407", "451030", "0.260472", "0"], ["Down", "CD59", "12", "0.004363", "207460", "0.290405", "0.030303"], ["Down", "CXCR1", "12", "8.07E − 04", "176404", "0.242095", "0.166667"], ["Down", "IL2", "12", "0.002493", "217616", "0.290487", "0.030303"], ["Down", "C6", "12", "9.26E − 04", "133246", "0.24911", "0"], ["Down", "CD74", "12", "0.003192", "267306", "0.315369", "0.121212"], ["Down", "CR2", "11", "0.001319", "143504", "0.267072", "0.036364"], ["Down", "CCR10", "11", "0.003702", "303034", "0.222963", "0.072727"], ["Down", "CTSC", "11", "0.004925", "257558", "0.302268", "0"], ["Down", "TGFBI", "10", "7.77E − 04", "51700", "0.253167", "0.155556"], ["Down", "CD209", "10", "4.47E − 04", "37928", "0.243628", "0.044444"], ["Down", "NT5E", "10", "0.003249", "169846", "0.314627", "0.022222"], ["Down", "IL10RA", "10", "0.001722", "123836", "0.32116", "0.155556"], ["Down", "MBL2", "9", "0.002733", "247190", "0.248106", "0.027778"], ["Down", "TNFRSF9", "9", "0.001065", "77604", "0.309005", "0.305556"], ["Down", "HLA-DQA1", "9", "8.50E − 04", "84902", "0.306147", "0.194444"], ["Down", "NFIL3", "9", "0.002148", "269802", "0.253063", "0"], ["Down", "MS4A1", "9", "6.53E − 04", "54246", "0.308664", "0.083333"], ["Down", "PTAFR", "9", "0.001839", "146258", "0.315401", "0.055556"], ["Down", "MASP1", "9", "0.002137", "326806", "0.225528", "0.083333"], ["Down", "PLA2G2A", "8", "0.002039", "625578", "0.228338", "0"], ["Down", "TNFRSF4", "8", "7.20E − 04", "87330", "0.26198", "0.321429"], ["Down", "IL13RA1", "8", "6.92E − 04", "54632", "0.3129", "0.214286"], ["Down", "CD48", 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["Down", "PIGR", "6", "0.001383", "46460", "0.267211", "0"], ["Down", "ICAM4", "6", "7.08E − 04", "122662", "0.244131", "0"], ["Down", "CCL11", "6", "4.36E − 04", "106892", "0.239682", "0"], ["Down", "FCAR", "6", "0.001325", "60556", "0.281404", "0.066667"], ["Down", "PTGER4", "6", "0.001594", "111600", "0.311981", "0"], ["Down", "RAG2", "6", "0.002235", "108180", "0.302893", "0.133333"], ["Down", "PPBP", "6", "0.00149", "101978", "0.25057", "0.066667"], ["Down", "IL3", "6", "1.42E − 05", "4398", "0.276848", "0.133333"], ["Down", "HLA-DQB1", "5", "1.37E − 04", "32052", "0.304361", "0.5"], ["Down", "IDO1", "5", "0.002598", "124836", "0.300263", "0"], ["Down", "TNFRSF10C", "5", "6.74E − 04", "112660", "0.252006", "0"], ["Down", "TNFRSF13C", "5", "6.50E − 04", "58590", "0.256308", "0.3"], ["Down", "IL17F", "5", "2.32E − 04", "81308", "0.256031", "0.2"], ["Down", "CFD", "5", "0.001535", "135276", "0.301765", "0"], ["Down", "CCL19", "5", "8.76E − 05", "9268", "0.219387", "0.4"], ["Down", "CD34", "5", "0.001329", "226272", "0.243224", "0"], ["Down", "IFNG", "5", "0.001405", "110736", "0.270285", "0"], ["Down", "IL23A", "5", "0.00132", "310874", "0.180846", "0.1"], ["Down", "EBI3", "5", "0.001288", "90012", "0.222769", "0.1"], ["Down", "C8B", "4", "2.59E − 04", "21386", "0.208212", "0.166667"], ["Down", "CCL20", "4", "0.001697", "215266", "0.242974", "0"], ["Down", "C4BPA", "4", "0.001305", "202342", "0.207217", "0"], ["Down", "C8A", "4", "5.17E − 04", "27442", "0.225528", "0.333333"], ["Down", "SLAMF6", "4", "6.38E − 06", "766", "0.274209", "0.333333"], ["Down", "CCR6", "4", "0.001956", "273648", "0.209231", "0"], ["Down", "BTLA", "4", "6.84E − 04", "61880", "0.275584", "0.333333"], ["Down", "CCR8", "4", "6.64E − 04", "48144", "0.196954", "0"], ["Down", "CXCL11", "4", "8.55E − 05", "11782", "0.220629", "0"], ["Down", "SIGIRR", "4", "3.08E − 06", "666", "0.277147", "0.333333"], ["Down", "ITLN1", "4", "0.001313", "85710", "0.272679", "0"], ["Down", "ICAM5", "4", "3.97E − 05", "5052", "0.242936", "0"], ["Down", "FCGRT", "4", "0.001307", "236680", "0.210779", "0"], ["Down", "CCL22", "4", "5.04E − 04", "43848", "0.247169", "0"], ["Down", "IL12B", "4", "1.64E − 04", "39054", "0.194859", "0.5"], ["Down", "IL27", "3", "2.87E − 04", "26194", "0.215697", "0.333333"], ["Down", "IL22", "3", "6.54E − 04", "37474", "0.199417", "0"], ["Down", "C7", "3", "1.54E − 04", "29126", "0.226657", "0"], ["Down", "TIGIT", "3", "0.001299", "79710", "0.18742", "0"], ["Down", "DEFB4A", "3", "0.002265", "309432", "0.250917", "0"], ["Down", "IL22RA2", "3", "8.49E − 04", "82918", "0.216806", "0"], ["Down", "IL21", "3", "2.06E − 05", "882", "0.21301", "0"], ["Down", "C9", "3", "1.97E − 05", "976", "0.229359", "0.333333"], ["Down", "LIF", "3", "1.35E − 05", "994", "0.252689", "0"], ["Down", "ITGAE", "3", "6.54E − 04", "122018", "0.226607", "0"], ["Down", "IL5", "3", "2.60E − 05", "1936", "0.26283", "0.333333"], ["Down", "HLA-DPB1", "2", "0", "0", "0.240356", "1"], ["Down", "CFI", "2", "6.50E − 04", "65960", "0.196527", "0"], ["Down", "IFNB1", "2", "0", "0", "0.254275", "1"], ["Down", "IFNA2", "2", "0", "0", "0.254275", "1"], ["Down", "XCL1", "2", "0.001299", "97076", "0.208706", "0"], ["Down", "CD1A", "2", "6.50E − 04", "79654", "0.20475", "0"], ["Down", "XCR1", "2", "6.50E − 04", "48540", "0.172698", "0"], ["Down", "DEFB103B", "2", "6.50E − 04", "91060", "0.173057", "0"], ["Down", "IL7", "2", "6.20E − 07", "68", "0.219497", "0"], ["Down", "KLRB1", "2", "6.50E − 04", "58078", "0.267815", "0"], ["Down", "IL20", "2", "0.666667", "4", "0.75", "0"], ["Down", "HLA-DMB", "1", "0", "0", "0.201796", "0"], ["Down", "HLA-DOB", "1", "0", "0", "0.16794", "0"], ["Down", "ICOSLG", "1", "0", "0", "0.200469", "0"], ["Down", "CD83", "1", "0", "0", "0.300029", "0"], ["Down", "GPR183", "1", "0", "0", "0.300029", "0"], ["Down", "IKBKAP", "1", "0", "0", "0.250938", "0"], ["Down", "DEFB1", "1", "0", "0", "0.173038", "0"], ["Down", "IL1RL2", "1", "0", "0", "0.20772", "0"], ["Down", "IL19", "1", "0", "0", "0.5", "0"]], "row_count": 277, "column_count": 7, "numeric_cells": 1443, "header_rows": 1, "locator": "section[15]/table-wrap[1]#Tab6"}}, {"id": "asset:table:pmid:33251083:7", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:9f3e4a1eac95f4caba623fab38d02663f148640b1982a308e2735b6d1ad0a952", "bytes": 10788, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[16]/table-wrap[1]#Tab7", "version": null, "note": "miRNA - target gene interaction table", "structure": {"pmcid": "PMC7679428", "section_index": 8, "section_title": "Construction of target gene–miRNA regulatory network", "row_count": 185, "column_count": 8}, "table": {"label": "Table 7", "caption": "miRNA - target gene interaction table", "rows": [["Regulation", "Target Genes", "Degree", "MicroRNA", "Regulation", "Target Genes", "Degree", "MicroRNA"], ["Up", "IKZF3", "134", "hsa-mir-6860", "Down", "SKI", "210", "hsa-mir-5100"], ["Up", "TP53", "130", "hsa-mir-5703", "Down", "TNFRSF13C", "136", "hsa-mir-3197"], ["Up", "IFNAR2", "109", "hsa-mir − 4510", "Down", "BCL2L11", "122", "hsa-mir-8064"], ["Up", "SMAD5", "83", "hsa-mir-6086", "Down", "ICOSLG", "119", "hsa-mir-3672"], ["Up", "STAT3", "80", "hsa-mir − 4270", "Down", "IL6R", "94", "hsa-mir-7641"], ["Up", "TRAF6", "71", "hsa-mir-6745", "Down", "VCAM1", "86", "hsa-mir − 4270"], ["Up", "RUNX1", "67", "hsa-mir − 4467", "Down", "LILRA2", "83", "hsa-mir − 4780"], ["Up", "ABL1", "64", "hsa-mir − 4511", "Down", "IRAK4", "78", "hsa-mir-520e"], ["Up", "KLRD1", "60", "hsa-mir-5094", "Down", "BTLA", "72", "hsa-mir-3133"], ["Up", "CCL5", "49", "hsa-mir − 4775", "Down", "CD55", "71", "hsa-mir-6124"], ["Up", "CTNNB1", "48", "hsa-mir − 4255", "Down", "CCL22", "71", "hsa-mir-5190"], ["Up", "MAP4K2", "47", "hsa-mir-6131", "Down", "CD44", "70", "hsa-mir-5696"], ["Up", "PSMB9", "44", "hsa-mir-3658", "Down", "PDGFB", "69", "hsa-mir-6132"], ["Up", "ZBTB16", "43", "hsa-mir − 4287", "Down", "BCL2", "68", "hsa-mir-184"], ["Up", "SOCS1", "42", "hsa-mir − 4495", "Down", "TFRC", "67", "hsa-mir-6070"], ["Up", "HLA-A", "39", "hsa-mir-6129", "Down", "PIGR", "66", "hsa-mir − 4486"], ["Up", "SERPING1", "38", "hsa-mir-1262", "Down", "CCL16", "63", "hsa-mir-7703"], ["Up", "CCR5", "33", "hsa-mir-3183", "Down", "IFNAR1", "61", "hsa-mir − 4430"], ["Up", "CLEC7A", "33", "hsa-mir − 4792", "Down", "TIRAP", "61", "hsa-mir − 4325"], ["Up", "CD99", "32", "hsa-mir-3199", "Down", "ETS1", "58", "hsa-mir-3972"], ["Up", "LILRB2", "30", "hsa-mir-3941", "Down", "CD59", "56", "hsa-mir-3919"], ["Up", "ATG10", "29", "hsa-mir − 4309", "Down", "IKZF2", "55", "hsa-mir-5096"], ["Up", "CCND3", "29", "hsa-mir-1321", "Down", "CEBPB", "54", "hsa-mir − 4510"], ["Up", "STAT5B", "25", "hsa-mir-8485", "Down", "CD209", "54", "hsa-mir-3188"], ["Up", "TRAF2", "21", "hsa-mir-6165", "Down", "HLA-C", "53", "hsa-mir − 4660"], ["Up", "HRAS", "21", "hsa-mir-1268a", "Down", "DUSP4", "53", "hsa-mir-6089"], ["Up", "STAT1", "19", "hsa-mir-1183", "Down", "CCR6", "52", "hsa-mir − 4539"], ["Up", "JAK1", "17", "hsa-mir-107", "Down", "TGFBR1", "51", "hsa-mir-8083"], ["Up", "CCRL2", "16", "hsa-mir − 4469", "Down", "MAPKAPK2", "50", "hsa-mir − 4468"], ["Up", "ITGAL", "14", "hsa-mir-764", "Down", "SLC2A1", "50", "hsa-mir − 4448"], ["Up", "FYN", "14", "hsa-mir-3924", "Down", "POU2F2", "49", "hsa-mir − 4307"], ["Up", "JAK2", "14", "hsa-mir-5692a", "Down", "LIF", "47", "hsa-mir-3655"], ["Up", "PDCD1", "13", "hsa-mir-922", "Down", "MBL2", "47", "hsa-mir-3689c"], ["Up", "C1QBP", "11", "hsa-mir − 484", "Down", "HLA-B", "44", "hsa-mir-5047"], ["Up", "IKBKB", "10", "hsa-mir − 451a", "Down", "ZEB1", "43", "hsa-mir-2113"], ["Up", "TLR2", "10", "hsa-mir-105-5p", "Down", "RELA", "41", "hsa-mir-7515"], ["Up", "XBP1", "10", "hsa-mir-320c", "Down", "CD46", "39", "hsa-mir − 4780"], ["Up", "TMEM173", "9", "hsa-mir-5093", "Down", "PAX5", "37", 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"4.929543", "Up", "C–C motif chemokine receptor 1"], ["CD99", "0.398773", "4.76E − 05", "4.76E − 05", "4.681138", "Up", "CD99 molecule (Xg blood group)"], ["SMAD5", "0.349818", "5.02E − 05", "5.02E − 05", "4.662446", "Up", "SMAD family member 5"], ["CD247", "0.51", "5.34E − 05", "5.34E − 05", "4.641555", "Up", "CD247 molecule"], ["TP53", "0.372273", "5.85E − 05", "5.85E − 05", "4.609909", "Up", "Tumor protein p53"], ["LAG3", "0.988591", "6.64E − 05", "6.64E − 05", "4.566916", "Up", "Lymphocyte activating 3"], ["LCP2", "0.432682", "6.74E − 05", "6.74E − 05", "4.561553", "Up", "Lymphocyte cytosolic protein 2"], ["SLAMF7", "0.577409", "8.58E − 05", "8.58E − 05", "4.478485", "Up", "SLAM family member 7"], ["TMEM173", "0.377318", "0.000103", "0.000103", "4.416144", "Up", "Transmembrane protein 173"], ["CUL9", "0.4155", "0.000119", "0.000119", "4.366647", "Up", "Cullin 9"], ["C2", "1.280182", "0.000153", "0.000153", "4.279415", "Up", "Complement C2"], ["GNLY", "1.067364", "0.000167", "0.000167", "4.248083", "Up", "Granulysin"], ["ATG10", "0.490955", "0.000234", "0.000234", "4.130655", "Up", "Autophagy related 10"], ["IKZF1", "0.321682", "0.000285", "0.000285", "4.061503", "Up", "IKAROS family zinc finger 1"], ["KIR_Activating_Subgroup_2", "1.279318", "0.00043", "0.00043", "3.915229", "Up", "Killer-cell immunoglobulin-like receptorSubgroup 2"], ["ITGAL", "0.370273", "0.000461", "0.000461", "3.890576", "Up", "Integrin subunit alpha L"], ["SERPING1", "1.992773", "0.00057", "0.00057", "3.815201", "Up", "Serpin family G member 1"], ["STAT1", "1.066864", "0.000762", "0.000762", "3.711251", "Up", "signal transducer and activator of transcription 1"], ["CCRL2", "0.621773", "0.000844", "0.000844", "3.674266", "Up", "C–C motif chemokine receptor like 2"], ["RUNX1", "0.392409", "0.001035", "0.001035", "3.600334", "Up", "RUNX family transcription factor 1"], ["KIR_Activating_Subgroup_1", "1.243455", "0.001444", "0.001444", "3.478418", "Up", "Killer-cell immunoglobulin-like receptor Subgroup 1"], ["IFIH1", "1.189", "0.001492", "0.001492", "3.466339", "Up", "Interferon induced with helicase C domain 1"], ["GP1BB", "1.252364", "0.001517", "0.001517", "3.460324", "Up", "Glycoprotein Ib platelet subunit beta"], ["TBX21", "0.557591", "0.001716", "0.001716", "3.414736", "Up", "T-box transcription factor 21"], ["BST2", "0.825727", "0.00183", "0.00183", "3.390875", "Up", "Bone marrow stromal cell antigen 2"], ["JAK2", "0.436727", "0.001927", "0.001927", "3.371677", "Up", "Janus kinase 2"], ["PSMB9", "0.490864", "0.001928", "0.001928", "3.371431", "Up", "Proteasome 20S subunit beta 9"], ["XBP1", "0.485455", "0.002051", "0.002051", "3.348399", "Up", "X-box binding protein 1"], ["GBP1", "0.999545", "0.003627", "0.003627", "3.133218", "Up", "Guanylate binding protein 1"], ["STAT4", "0.295591", "0.003667", "0.003667", "3.129061", "Up", "Signal transducer and activator of transcription 4"], ["MAP4K1", "0.2385", "0.003959", "0.003959", "3.099644", "Up", "Mitogen-activated protein kinase kinasekinasekinase 1"], ["CCND3", "0.326591", "0.004076", "0.004076", "3.08846", "Up", "cyclin D3"], ["LILRA6", "0.817091", "0.004839", "0.004839", "3.022071", "Up", "Leukocyte immunoglobulin like receptor A6"], ["GFI1", "0.495591", "0.005741", "0.005741", "2.955427", "Up", "Growth factor independent 1 transcriptional repressor"], ["HLA-A", "0.385909", "0.005824", "0.005824", "2.949825", "Up", "Major histocompatibility complex, class I, A"], ["IL18RAP", "0.982227", "0.006135", "0.006135", "2.929331", "Up", "Interleukin 18 receptor accessory protein"], ["C1QBP", "0.264182", "0.006145", "0.006145", "2.928686", "Up", "Complement C1q binding protein"], ["CCL5", "0.3105", "0.006563", "0.006563", "2.902767", "Up", "C–C motif chemokine ligand 5"], ["SOCS1", "0.704318", "0.007115", "0.007115", "2.870801", "Up", "Suppressor of cytokine signaling 1"], ["STAT3", "0.370545", "0.010179", "0.010179", "2.72698", "Up", "Signal transducer and activator of transcription 3"], ["CEACAM1", "0.784909", "0.011682", "0.011682", "2.670737", "Up", "CEA cell adhesion molecule 1"], ["TLR2", "0.589773", "0.013287", "0.013287", "2.617647", "Up", "toll like receptor 2"], ["KLRK1", "0.358136", "0.014239", "0.014239", "2.588898", "Up", "killer cell lectin like receptor K1"], ["MAP4K2", "0.221227", "0.018828", "0.018828", "2.471244", "Up", "Mitogen-activated protein kinase kinasekinasekinase 2"], ["KLRC1", "0.7945", "0.019896", "0.019896", "2.4477", "Up", "Killer cell lectin like receptor C1"], ["ATG5", "0.327", "0.020137", "0.020137", "2.44253", "Up", "Autophagy related 5"], ["IL18R1", "0.713136", "0.020905", "0.020905", "2.426467", "Up", "Interleukin 18 receptor 1"], ["IKBKB", "0.1695", "0.027641", "0.027641", "2.304841", "Up", "Inhibitor of nuclear factor kappa B kinase subunit beta"], ["STAT5B", "0.2575", "0.032278", "0.032278", "2.235871", "Up", "Signal transducer and activator of transcription 5B"], ["MX1", "1.111727", "0.032817", "0.032817", "2.228441", "Up", "MX dynamin like GTPase 1"], ["IRF7", "0.898909", "0.033248", "0.033248", "2.222589", "Up", "Interferon regulatory factor 7"], ["TRAF2", "0.171955", "0.034273", "0.034273", "2.208908", "Up", "TNF receptor associated factor 2"], ["IFI35", "0.725909", "0.035093", "0.035093", "2.198229", "Up", "Interferon induced protein 35"], ["IKBKE", "0.236545", "0.035149", "0.035149", "2.197514", "Up", "Inhibitor of nuclear factor kappa B kinase subunit epsilon"], ["CLEC7A", "0.421227", "0.037828", "0.037828", "2.164155", "Up", "C-type lectin domain containing 7A"], ["LTB4R", "0.465227", "0.03902", "0.03902", "2.149988", "Up", "Leukotriene B4 receptor"], ["GZMB", "0.437364", "0.040654", "0.040654", "2.131179", "Up", "Granzyme B"], ["NLRP3", "0.290364", "0.04286", "0.04286", "2.106829", "Up", "NLR family pyrin domain containing 3"], ["LILRB2", "0.299364", "0.042931", "0.042931", "2.106059", "Up", "Leukocyte immunoglobulin like receptor B2"], ["IFNAR2", "0.184136", "0.048633", "0.048633", "2.047965", "Up", "Interferon alpha and beta receptor subunit 2"], ["KLRD1", "0.4455", "0.049759", "0.049759", "2.037205", "Up", "Killer cell lectin like receptor D1"], ["CD19", "− 1.7175", "5.18E − 16", "5.18E − 16", "− 14.7177", "Down", "CD19 molecule"], ["CD22", "− 1.757", "4.93E − 15", "4.93E − 15", "− 13.592", "Down", "CD22 molecule"], ["MS4A1", "− 1.67741", "1.67E − 14", "1.67E − 14", "− 13.0082", "Down", "Membrane spanning 4-domains A1"], ["CD45RB", "− 0.94709", "4.17E − 14", "4.17E − 14", "− 12.5832", "Down", "Receptor-Type Tyrosine-Protein Phosphatase C"], ["IL6R", "− 2.0375", "1.05E − 13", "1.05E − 13", "− 12.164", "Down", "interleukin 6 receptor"], ["TNFRSF13C", "− 1.46186", "2.18E − 13", "2.18E − 13", "− 11.8375", "Down", "TNF receptor superfamily member 13C"], ["PAX5", "− 1.37636", "2.92E − 13", "2.92E − 13", "− 11.7085", "Down", "Paired box 5"], ["CD79A", "− 1.29577", "2.53E − 12", "2.53E − 12", "− 10.7841", "Down", "CD79a molecule"], ["ARHGDIB", "− 0.65064", "3.68E − 12", "3.68E − 12", "− 10.6278", "Down", "Rho GDP dissociation inhibitor beta"], ["HLA-DQB1", "− 4.88305", "5.18E − 12", "5.18E − 12", "− 10.4865", "Down", "Major histocompatibility complex, class II, DQ beta 1"], ["HLA-DQA1", "− 6.1155", "1.8E − 11", "1.8E − 11", "− 9.98021", "Down", "Major histocompatibility complex, class II, DQ alpha 1"], ["MAPKAPK2", "− 0.99755", "5.49E − 11", "5.49E − 11", "− 9.53915", "Down", "MAPK activated protein kinase 2"], ["SLAMF6", "− 0.87414", "2.16E − 10", "2.16E − 10", "− 9.01008", "Down", "SLAM family member 6"], ["PTGER4", "− 0.76932", "2.43E − 10", "2.43E − 10", "− 8.96519", "Down", "Prostaglandin E receptor 4"], ["CD79B", "− 0.84082", "2.75E − 10", "2.75E − 10", "− 8.91788", "Down", "CD79b molecule"], ["CD97", "− 1.1985", "3.22E − 10", "3.22E − 10", "− 8.85915", "Down", "Leukocyte antigen CD97"], ["IL1RL2", "− 1.04873", "3.57E − 10", "3.57E − 10", "− 8.81964", "Down", "Interleukin 1 receptor like 2"], ["CD1A", "− 1.07114", "3.6E − 10", "3.6E − 10", "− 8.81626", "Down", "CD1a molecule"], ["IL1RAP", "− 1.43418", "8.92E − 10", "8.92E − 10", "− 8.47672", "Down", "Interleukin 1 receptor accessory protein"], ["TNFSF12", "− 0.53718", "2.42E − 09", "2.42E − 09", "− 8.10915", "Down", "TNF superfamily member 12"], ["AICDA", "− 0.94759", "2.89E − 09", "2.89E − 09", "− 8.04473", "Down", "Activation induced cytidinedeaminase"], ["MBP", "− 0.77614", "4.02E − 09", "4.02E − 09", "− 7.92468", "Down", "myelin basic protein"], ["TRAF4", "− 0.67777", "5.69E − 09", "5.69E − 09", "− 7.79888", "Down", "TNF receptor associated factor 4"], ["MIF", "− 0.59309", "5.94E − 09", "5.94E − 09", "− 7.78344", "Down", "Macrophage migration inhibitory factor"], ["CCBP2", "− 1.34027", "6.31E − 09", "6.31E − 09", "− 7.76207", "Down", "Chemokine-binding protein 2"], ["CCL22", "− 0.68986", "8.3E − 09", "8.3E − 09", "− 7.66358", "Down", "C–C motif chemokine ligand 22"], ["HLA-DRA", "− 1.87223", "9.28E − 09", "9.28E − 09", "− 7.62328", "Down", "Major histocompatibility complex, class II, DR alpha"], ["FCER1A", "− 2.15768", "9.79E − 09", "9.79E − 09", "− 7.60411", "Down", "Fc fragment of IgE receptor Ia"], ["LILRB5", "− 0.76595", "1.11E − 08", "1.11E − 08", "− 7.55809", "Down", "Leukocyte immunoglobulin like receptor B5"], ["CCL15", "− 0.7105", "1.48E − 08", "1.48E − 08", "− 7.4567", "Down", "C–C motif chemokine ligand 15"], ["IL12B", "− 0.99886", "1.5E − 08", "1.5E − 08", "− 7.45174", "Down", "Interleukin 12B"], ["TFRC", "− 1.07782", "1.61E − 08", "1.61E − 08", "− 7.42698", "Down", "Transferrin receptor"], ["EBI3", "− 0.72195", "1.86E − 08", "1.86E − 08", "− 7.37653", "Down", "Epstein-Barr virus induced 3"], ["IL4", "− 0.69941", "2.72E − 08", "2.72E − 08", "− 7.24189", "Down", "Interleukin 4"], ["ICAM2", "− 0.74745", "2.86E − 08", "2.86E − 08", "− 7.22422", "Down", "Intercellular adhesion molecule 2"], ["KLRAP1", "− 1.0865", "3.09E − 08", "3.09E − 08", "− 7.19683", "Down", "Killer cell lectin-like receptor subfamily A pseudogene 1"], ["CD40", "− 0.79436", "3.29E − 08", "3.29E − 08", "− 7.17439", "Down", "CD40 molecule"], ["IL22RA2", "− 0.6365", "4.34E − 08", "4.34E − 08", "− 7.07766", "Down", "Interleukin 22 receptor subunit alpha 2"], ["IL2", "− 0.64395", "4.65E − 08", "4.65E − 08", "− 7.05298", "Down", "Interleukin 2"], ["IL29", "− 0.64395", "4.65E − 08", "4.65E − 08", "− 7.05298", "Down", "Interleukin 29"], ["CD3E", "− 0.73018", "5.24E − 08", "5.24E − 08", "− 7.01159", "Down", "CD3e molecule"], ["CD55", "− 0.92114", "5.29E − 08", "5.29E − 08", "− 7.00828", "Down", "CD55 molecule (Cromer blood group)"], ["IL19", "− 0.6555", "5.33E − 08", "5.33E − 08", "− 7.00515", "Down", "Interleukin 19"], ["NOS2", "− 0.81432", "5.6E − 08", "5.6E − 08", "− 6.98829", "Down", "Nitric oxide synthase 2"], ["C4BPA", "− 1.83359", "5.78E − 08", "5.78E − 08", "− 6.97697", "Down", "Complement component 4 binding protein alpha"], ["CCL26", "− 0.57677", "6.5E − 08", "6.5E − 08", "− 6.93596", "Down", "C–C motif chemokine ligand 26"], ["CDH5", "− 0.60586", "7.09E − 08", "7.09E − 08", "− 6.90577", "Down", "Cadherin 5"], ["IL9", "− 0.60586", "7.09E − 08", "7.09E − 08", "− 6.90577", "Down", "Interleukin 9"], ["FCGRT", "− 0.75709", "8.18E − 08", "8.18E − 08", "− 6.85603", "Down", "Fc fragment of IgG receptor and transporter"], ["C8B", "− 0.6555", "1.1E − 07", "1.1E − 07", "− 6.75159", "Down", "Complement C8 beta chain"], ["IL5", "− 0.64086", "1.16E − 07", "1.16E − 07", "− 6.7344", "Down", "Interleukin 5"], ["PIGR", "− 0.66695", "1.33E − 07", "1.33E − 07", "− 6.68821", "Down", "Polymeric immunoglobulin receptor"], ["XCL1", "− 1.06423", "1.98E − 07", "1.98E − 07", "− 6.54928", "Down", "X-C motif chemokine ligand 1"], ["AIRE", "− 0.78032", "2.01E − 07", "2.01E − 07", "− 6.5441", "Down", "Autoimmune regulator"], ["IL3", "− 0.60723", "2.08E − 07", "2.08E − 07", "− 6.53283", "Down", "Interleukin 3"], ["CCL16", "− 0.6195", "2.31E − 07", "2.31E − 07", "− 6.4973", "Down", "C–C motif chemokine ligand 16"], ["CCL7", "− 0.6195", "2.31E − 07", "2.31E − 07", "− 6.4973", "Down", "C–C motif chemokine ligand 7"], ["CSF2", "− 0.6195", "2.31E − 07", "2.31E − 07", "− 6.4973", "Down", "Colony stimulating factor 2"], ["ITLN2", "− 0.6195", "2.31E − 07", "2.31E − 07", "− 6.4973", "Down", "Intelectin 2"], ["THY1", "− 0.6195", "2.31E − 07", "2.31E − 07", "− 6.4973", "Down", "Thy-1 cell surface antigen"], ["IL21", "− 0.70245", "3.28E − 07", "3.28E − 07", "− 6.37574", "Down", "Interleukin 21"], ["BCL2", "− 0.7385", "4.11E − 07", "4.11E − 07", "− 6.29854", "Down", "BCL2 apoptosis regulator"], ["EDNRB", "− 0.60541", "4.11E − 07", "4.11E − 07", "− 6.29833", "Down", "Endothelin receptor type B"], ["CCR6", "− 0.88205", "4.78E − 07", "4.78E − 07", "− 6.24666", "Down", "C–C motif chemokine receptor 6"], ["TIRAP", "− 0.70182", "5.91E − 07", "5.91E − 07", "− 6.17398", "Down", "TIR domain containing adaptor protein"], ["STAT6", "− 0.52186", "6.37E − 07", "6.37E − 07", "− 6.14848", "Down", "Signal transducer and activator of transcription 6"], ["PSMB10", "− 0.43945", "6.43E − 07", "6.43E − 07", "− 6.14519", "Down", "Proteasome 20S subunit beta 10"], ["SKI", "− 0.52182", "7.16E − 07", "7.16E − 07", "− 6.10886", "Down", "SKI proto-oncogene"], ["RAG2", "− 0.56723", "8.47E − 07", "8.47E − 07", "− 6.05149", "Down", "Recombination activating 2"], ["CD209", "− 0.7285", "8.56E − 07", "8.56E − 07", "− 6.04758", "Down", "CD209 molecule"], ["VTN", "− 0.68305", "9.43E − 07", "9.43E − 07", "− 6.01488", "Down", "Vitronectin"], ["IFNB1", "− 0.57768", "9.97E − 07", "9.97E − 07", "− 5.99573", "Down", "Interferon beta 1"], ["EOMES", "− 0.77505", "1.47E − 06", "1.47E − 06", "− 5.8643", "Down", "Eomesodermin"], ["CD74", "− 0.69905", "1.52E − 06", "1.52E − 06", "− 5.85145", "Down", "CD74 molecule"], ["CCR10", "− 0.60368", "1.7E − 06", "1.7E − 06", "− 5.81503", "Down", "C–C motif chemokine receptor 10"], ["LGALS3", "− 1.12309", "1.85E − 06", "1.85E − 06", "− 5.78563", "Down", "Galectin 3"], ["PDGFB", "− 0.64241", "1.86E − 06", "1.86E − 06", "− 5.78395", "Down", "Platelet derived growth factor subunit B"], ["ICAM4", "− 0.96814", "1.96E − 06", "1.96E − 06", "− 5.76557", "Down", "Intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)"], ["ICOSLG", "− 0.74791", "2.07E − 06", "2.07E − 06", "− 5.74698", "Down", "Inducible T cell costimulator ligand"], ["C9", "− 0.52132", "2.66E − 06", "2.66E − 06", "− 5.66169", "Down", "Complement C9"], ["IL16", "− 0.45973", "2.88E − 06", "2.88E − 06", "− 5.63467", "Down", "Interleukin 16"], ["RELA", "− 0.47205", "3.09E − 06", "3.09E − 06", "− 5.61097", "Down", "RELA proto-oncogene, NF-kB subunit"], ["DEFB1", "− 0.8105", "3.38E − 06", "3.38E − 06", "− 5.58051", "Down", "Defensin beta 1"], ["IL13RA1", "− 0.90159", "3.41E − 06", "3.41E − 06", "− 5.57755", "Down", "Interleukin 13 receptor subunit alpha 1"], ["HLA-DOB", "− 1.24595", "3.65E − 06", "3.65E − 06", "− 5.55493", "Down", "Major histocompatibility complex, class II, DO beta"], ["KIR3DL3", "− 0.56905", "3.78E − 06", "3.78E − 06", "− 5.54244", "Down", "Killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 3"], ["HLA-C", "− 0.93941", "3.97E − 06", "3.97E − 06", "− 5.52568", "Down", "Major histocompatibility complex, class I, C"], ["KLRB1", "− 1.79632", "5.31E − 06", "5.31E − 06", "− 5.42732", "Down", "Killer cell lectin like receptor B1"], ["HLA-DMB", "− 0.85005", "5.86E − 06", "5.86E − 06", "− 5.39367", "Down", "Major histocompatibility complex, class II, DM beta"], ["KLRF2", "− 0.53859", "6E − 06", "6E − 06", "− 5.3857", "Down", "Killer cell lectin like receptor F2"], ["ICAM3", "− 0.66718", "6.38E − 06", "6.38E − 06", "− 5.36481", "Down", "Intercellular adhesion molecule 3"], ["IL28A", "− 0.55718", "7.03E − 06", "7.03E − 06", "− 5.33194", "Down", "Interleukin 28A"], ["SIGIRR", "− 0.41545", "7.52E − 06", "7.52E − 06", "− 5.30925", "Down", "Single Ig and TIR domain containing"], ["MASP2", "− 0.68927", "7.93E − 06", "7.93E − 06", "− 5.29109", "Down", "Mannan binding lectin serine peptidase 2"], ["CSF2RB", "− 1.12332", "8.36E − 06", "8.36E − 06", "− 5.27318", "Down", "Colony stimulating factor 2 receptor beta common subunit"], ["CD46", "− 0.59905", "9.11E − 06", "9.11E − 06", "− 5.24408", "Down", "CD46 molecule"], ["S1PR1", "− 0.60436", "9.23E − 06", "9.23E − 06", "− 5.23966", "Down", "Sphingosine − 1-phosphate receptor 1"], ["TLR9", "− 0.56841", "1.05E − 05", "1.05E − 05", "− 5.19438", "Down", "Toll like receptor 9"], ["HLA-DPB1", "− 0.70064", "1.07E − 05", "1.07E − 05", "− 5.19046", "Down", "Major histocompatibility complex, class II, DP beta 1"], ["CCL13", "− 0.57018", "1.16E − 05", "1.16E − 05", "− 5.16161", "Down", "C–C motif chemokine ligand 13"], ["PLA2G2E", "− 0.67155", "1.19E − 05", "1.19E − 05", "-5.15362", "Down", "Phospholipase A2 group IIE"], ["IL20", "− 0.67032", "1.29E − 05", "1.29E − 05", "-5.12687", "Down", "Interleukin 20"], ["PTAFR", "− 0.91373", "1.37E − 05", "1.37E − 05", "-5.10671", "Down", "Platelet activating factor receptor"], ["TGFBI", "− 0.59209", "1.44E − 05", "1.44E − 05", "-5.08943", "Down", "Transforming growth factor beta induced"], ["IL26", "− 0.50514", "1.52E − 05", "1.52E − 05", "-5.07029", "Down", "Interleukin 26"], ["IFNAR1", "− 0.78755", "2.03E − 05", "2.03E − 05", "− 4.97214", "Down", "Interferon alpha and beta receptor subunit 1"], ["LTA", "− 0.56282", "2.17E − 05", "2.17E − 05", "− 4.94915", "Down", "Lymphotoxin alpha"], ["FCGR2B", "− 0.85355", "2.4E − 05", "2.4E − 05", "− 4.91443", "Down", "Fc fragment of IgG receptor IIb"], ["EGR1", "− 0.63082", "2.41E − 05", "2.41E − 05", "− 4.9133", "Down", "Early growth response 1"], ["CD86", "− 0.76691", "2.54E − 05", "2.54E − 05", "− 4.89525", "Down", "CD86 molecule"], ["CD82", "− 0.99568", "2.76E − 05", "2.76E − 05", "− 4.86674", "Down", "CD82 molecule"], ["CD34", "− 0.56045", "2.79E − 05", "2.79E − 05", "− 4.86293", "Down", "CD34 molecule"], ["TRAF3", "− 0.46214", "2.87E − 05", "2.87E − 05", "− 4.85429", "Down", "TNF receptor associated factor 3"], ["CTLA4", "− 0.53577", "3E − 05", "3E − 05", "− 4.83886", "Down", "Cytotoxic T-Lymphocyte Associated Protein 4"], ["HAMP", "− 0.61205", "3E − 05", "3E − 05", "− 4.83856", "Down", "Hepcidin antimicrobial peptide"], ["EGR2", "− 0.78873", "3.15E − 05", "3.15E − 05", "− 4.82228", "Down", "Early growth response 2"], ["ICAM5", "− 0.53214", "3.22E − 05", "3.22E − 05", "− 4.81493", "Down", "Intercellular adhesion molecule 5"], ["CSF1R", "− 0.70273", "3.45E − 05", "3.45E − 05", "− 4.79056", "Down", "Colony stimulating factor 1 receptor"], ["NT5E", "− 0.85836", "3.68E − 05", "3.68E − 05", "− 4.76884", "Down", "5′-nucleotidase ecto"], ["IL7", "− 0.74464", "4.3E − 05", "4.3E − 05", "− 4.71548", "Down", "Interleukin 7"], ["CTSS", "− 0.62991", "4.34E − 05", "4.34E − 05", "− 4.71277", "Down", "Cathepsin S"], ["IL17B", "− 0.55268", "4.82E − 05", "4.82E − 05", "− 4.6769", "Down", "Interleukin 17B"], ["CR2", "− 1.00786", "4.86E − 05", "4.86E − 05", "− 4.67369", "Down", "Complement C3d receptor 2"], ["CD44", "− 0.35164", "5.25E − 05", "5.25E − 05", "− 4.64701", "Down", "CD44 molecule (Indian blood group)"], ["PLA2G2A", "− 0.53655", "5.77E − 05", "5.77E − 05", "− 4.61492", "Down", "Phospholipase A2 group IIA"], ["BTK", "− 0.45495", "5.87E − 05", "5.87E − 05", "− 4.60896", "Down", "Bruton tyrosine kinase"], ["C6", "− 0.65964", "5.95E − 05", "5.95E − 05", "− 4.60439", "Down", "Complement C6"], ["IRGM", "− 0.62291", "6.21E − 05", "6.21E − 05", "− 4.58953", "Down", "Immunity related GTPase M"], ["IL22", "− 0.65314", "7.15E − 05", "7.15E − 05", "− 4.54121", "Down", "Interleukin 22"], ["CEBPB", "− 0.88709", "7.69E − 05", "7.69E − 05", "− 4.51625", "Down", "CCAAT enhancer binding protein beta"], ["IL6", "− 0.69105", "7.91E − 05", "7.91E − 05", "− 4.50639", "Down", "Interleukin 6"], ["IFNA2", "− 0.77586", "8.23E − 05", "8.23E − 05", "− 4.49296", "Down", "Interferon alpha 2"], ["TGFBR1", "− 0.40336", "8.66E − 05", "8.66E − 05", "− 4.47511", "Down", "Transforming growth factor beta receptor 1"], ["IL17F", "− 0.54009", "8.83E − 05", "8.83E − 05", "− 4.4686", "Down", "Interleukin 17F"], ["IL28A/B", "− 0.55282", "0.000163", "0.000163", "− 4.25674", "Down", "Interleukin 28A/B"], ["IL17A", "− 0.53723", "0.00018", "0.00018", "− 4.22236", "Down", "Interleukin 17A"], ["LILRA2", "− 0.68495", "0.000195", "0.000195", "− 4.194", "Down", "Leukocyte immunoglobulin like receptor A2"], ["LILRA3", "− 2.33691", "0.000203", "0.000203", "− 4.18055", "Down", "Leukocyte immunoglobulin like receptor A3"], ["VCAM1", "− 0.60605", "0.000219", "0.000219", "− 4.15259", "Down", "Vascular cell adhesion molecule 1"], ["SPP1", "− 0.6555", "0.000221", "0.000221", "− 4.1496", "Down", "Secreted phosphoprotein 1"], ["CARD9", "− 0.55227", "0.000269", "0.000269", "− 4.0818", "Down", "Caspase recruitment domain family member 9"], ["LCK", "− 0.40364", "0.000299", "0.000299", "− 4.04398", "Down", "LCK proto-oncogene, Src family tyrosine kinase"], ["SELE", "− 0.52332", "0.000306", "0.000306", "− 4.03551", "Down", "selectin E"], ["SLC2A1", "− 0.44118", "0.00036", "0.00036", "− 3.97865", "Down", "solute carrier family 2 member 1"], ["LIF", "− 0.50555", "0.000368", "0.000368", "− 3.97037", "Down", "LIF interleukin 6 family cytokine"], ["IDO1", "− 0.95541", "0.000417", "0.000417", "− 3.92685", "Down", "Indoleamine 2,3-dioxygenase 1"], ["TNFRSF10C", "− 0.88564", "0.000471", "0.000471", "− 3.88294", "Down", "TNF receptor superfamily member 10c"], ["IL23A", "− 0.87541", "0.000557", "0.000557", "− 3.82374", "Down", "interleukin 23 subunit alpha"], ["CD80", "− 0.58964", "0.000567", "0.000567", "− 3.81702", "Down", "CD80 molecule"], ["GPR183", "− 1.088", "0.00057", "0.00057", "− 3.81527", "Down", "G protein-coupled receptor 183"], ["C1R", "− 0.41727", "0.000592", "0.000592", "− 3.8018", "Down", "Complement C1r"], ["CCL11", "− 0.55055", "0.000611", "0.000611", "− 3.79064", "Down", "C–C motif chemokine ligand 11"], ["HLA-DPA1", "− 0.6385", "0.000637", "0.000637", "− 3.77577", "Down", "major histocompatibility complex, class II, DP alpha 1"], ["IFNG", "− 0.877", "0.00073", "0.00073", "− 3.72658", "Down", "Interferon gamma"], ["DUSP4", "− 0.70741", "0.000789", "0.000789", "− 3.69861", "Down", "Dual specificity phosphatase 4"], ["IL27", "− 0.44905", "0.000852", "0.000852", "− 3.67089", "Down", "Interleukin 27"], ["CD48", "− 1.15805", "0.000953", "0.000953", "− 3.6304", "Down", "CD48 molecule"], ["FN1", "− 0.56177", "0.001005", "0.001005", "− 3.61111", "Down", "fibronectin 1"], ["CD244", "− 0.39427", "0.001018", "0.001018", "− 3.60646", "Down", "CD244 molecule"], ["PPBP", "− 1.35464", "0.001091", "0.001091", "− 3.58105", "Down", "pro-platelet basic protein"], ["IL13", "− 0.599", "0.001204", "0.001204", "− 3.54515", "Down", "interleukin 13"], ["CCL24", "− 0.45395", "0.001221", "0.001221", "− 3.53987", "Down", "C–C motif chemokine ligand 24"], ["GATA3", "− 0.55041", "0.001228", "0.001228", "− 3.53797", "Down", "GATA binding protein 3"], ["BID", "− 0.46636", "0.001281", "0.001281", "− 3.52243", "Down", "BH3 interacting domain death agonist"], ["BCL2L11", "− 0.40091", "0.001565", "0.001565", "− 3.44881", "Down", "BCL2 like 11"], ["KIT", "− 0.52868", "0.001589", "0.001589", "− 3.44316", "Down", "KIT proto-oncogene, receptor tyrosine kinase"], ["MME", "− 1.00591", "0.001596", "0.001596", "− 3.44151", "Down", "Membrane metalloendopeptidase"], ["ZEB1", "− 0.38082", "0.001667", "0.001667", "− 3.42548", "Down", "Zinc finger E-box binding homeobox 1"], ["C4A/B", "− 0.62314", "0.001738", "0.001738", "− 3.40994", "Down", "Complement C4A/B"], ["FCAR", "− 0.50423", "0.00198", "0.00198", "− 3.36169", "Down", "Fc fragment of IgA receptor"], ["BTLA", "− 0.45623", "0.002033", "0.002033", "− 3.35183", "Down", "B and T lymphocyte associated"], ["TAGAP", "− 0.38886", "0.002261", "0.002261", "− 3.31206", "Down", "T cell activation RhoGTPase activating protein"], ["CD83", "− 0.39914", "0.002292", "0.002292", "− 3.307", "Down", "CD83 molecule"], ["SELPLG", "− 0.37564", "0.002362", "0.002362", "-3.29575", "Down", "Selectin P ligand"], ["B3GAT1", "− 0.66791", "0.002423", "0.002423", "− 3.28614", "Down", "Beta-1,3-glucuronyltransferase 1"], ["CCRL1", "− 0.39195", "0.002543", "0.002543", "− 3.26788", "Down", "C–C chemokine receptor type 11"], ["TNFRSF14", "− 0.29986", "0.002557", "0.002557", "− 3.26588", "Down", "TNF receptor superfamily member 14"], ["CSF3R", "− 0.65318", "0.003003", "0.003003", "− 3.20507", "Down", "Colony stimulating factor 3 receptor"], ["CD9", "− 0.87091", "0.003004", "0.003004", "− 3.20497", "Down", "CD9 molecule"], ["C1S", "− 0.52059", "0.003211", "0.003211", "− 3.17969", "Down", "complement C1s"], ["PECAM1", "− 0.30873", "0.003251", "0.003251", "− 3.17496", "Down", "platelet and endothelial cell adhesion molecule 1"], ["DEFB103B", "− 0.4315", "0.003466", "0.003466", "− 3.15055", "Down", "Defensin beta 103B"], ["ITLN1", "− 1.17682", "0.003488", "0.003488", "− 3.14815", "Down", "Intelectin 1"], ["CXCL13", "− 0.46586", "0.003554", "0.003554", "− 3.14101", "Down", "C-X-C motif chemokine ligand 13"], ["RAG1", "− 0.47836", "0.003917", "0.003917", "− 3.10376", "Down", "Recombination activating 1"], ["TNFRSF4", "− 0.55123", "0.004154", "0.004154", "− 3.08112", "Down", "TNF receptor superfamily member 4"], ["C14orf166", "− 0.35727", "0.004255", "0.004255", "− 3.07189", "Down", "Chromosome 14 open reading frame 166"], ["IL10RA", "− 0.26059", "0.004423", "0.004423", "− 3.0569", "Down", "Interleukin 10 receptor subunit alpha"], ["POU2F2", "− 0.292", "0.004614", "0.004614", "− 3.04059", "Down", "POU class 2 homeobox 2"], ["C7", "− 0.41223", "0.004688", "0.004688", "− 3.03441", "Down", "complement C7"], ["RORC", "− 0.52768", "0.005006", "0.005006", "− 3.00891", "Down", "RAR related orphan receptor C"], ["CXCL11", "− 0.83891", "0.005151", "0.005151", "− 2.99784", "Down", "C-X-C motif chemokine ligand 11"], ["MASP1", "− 0.50677", "0.005182", "0.005182", "− 2.99543", "Down", "Mannan binding lectin serine peptidase 1"], ["MAP4K4", "− 0.37777", "0.005449", "0.005449", "− 2.97583", "Down", "Mitogen-activated protein kinase kinasekinasekinase 4"], ["CX3CL1", "− 0.50445", "0.005597", "0.005597", "− 2.96535", "Down", "C-X3-C motif chemokine ligand 1"], ["BATF3", "− 0.62586", "0.005862", "0.005862", "− 2.94725", "Down", "Basic leucine zipper ATF-like transcription factor 3"], ["CCR8", "− 0.51627", "0.005946", "0.005946", "− 2.94164", "Down", "C–C motif chemokine receptor 8"], ["TAL1", "− 1.01455", "0.006016", "0.006016", "− 2.93707", "Down", "TAL bHLH transcription factor 1, erythroid differentiation factor"], ["NFIL3", "− 0.723", "0.007", "0.007", "− 2.87725", "Down", "Nuclear factor, interleukin 3 regulated"], ["CD8A", "− 0.50595", "0.007337", "0.007337", "− 2.85858", "Down", "CD8a molecule"], ["CLEC6A", "− 0.62323", "0.007445", "0.007445", "− 2.85274", "Down", "C-type lectin domain containing 6A"], ["TCF4", "− 0.37827", "0.007904", "0.007904", "− 2.8289", "Down", "Transcription factor 4"], ["FCGR2A", "− 0.664", "0.009089", "0.009089", "− 2.77283", "Down", "Fc fragment of IgG receptor IIa"], ["HLA-B", "− 0.31677", "0.00918", "0.00918", "− 2.76877", "Down", "major histocompatibility complex, class I, B"], ["IRF8", "− 0.39477", "0.009346", "0.009346", "− 2.76157", "Down", "Interferon regulatory factor 8"], ["MAPK11", "− 0.60427", "0.010152", "0.010152", "− 2.72804", "Down", "Mitogen-activated protein kinase 11"], ["ILF3", "− 0.17055", "0.010366", "0.010366", "− 2.71958", "Down", "Interleukin enhancer binding factor 3"], ["XCR1", "− 0.34541", "0.01065", "0.01065", "− 2.70856", "Down", "X–C motif chemokine receptor 1"], ["ITGAE", "− 0.33509", "0.011424", "0.011424", "− 2.67988", "Down", "Integrin subunit alpha E"], ["IL4R", "− 0.69064", "0.012538", "0.012538", "− 2.64162", "Down", "Interleukin 4 receptor"], ["CTSC", "− 0.16718", "0.012619", "0.012619", "− 2.63897", "Down", "Cathepsin C"], ["ETS1", "− 0.39405", "0.013255", "0.013255", "− 2.61865", "Down", "ETS proto-oncogene 1, transcription factor"], ["CFI", "− 0.30082", "0.013335", "0.013335", "− 2.61614", "Down", "Complement factor I"], ["STAT5A", "− 0.27168", "0.014802", "0.014802", "− 2.57273", "Down", "Signal transducer and activator of transcription 5A"], ["C8A", "− 0.37964", "0.016204", "0.016204", "− 2.53478", "Down", "Complement C8 alpha chain"], ["DEFB4A", "− 0.36691", "0.017835", "0.017835", "− 2.49428", "Down", "Defensin beta 4A"], ["RELB", "− 0.45095", "0.019351", "0.019351", "− 2.45958", "Down", "RELB proto-oncogene, NF-kB subunit"], ["ATG7", "− 0.32859", "0.01984", "0.01984", "− 2.4489", "Down", "Autophagy related 7"], ["DPP4", "− 0.38823", "0.01999", "0.01999", "− 2.44568", "Down", "Dipeptidyl peptidase 4"], ["GPI", "− 0.21382", "0.020424", "0.020424", "− 2.43646", "Down", "Glucose-6-phosphate isomerase"], ["CD59", "− 0.24032", "0.020561", "0.020561", "− 2.43359", "Down", "CD59 molecule (CD59 blood group)"], ["CASP3", "− 0.40573", "0.025629", "0.025629", "− 2.33807", "Down", "Caspase 3"], ["TIGIT", "− 0.3615", "0.025963", "0.025963", "− 2.33239", "Down", "T cell immunoreceptor with Ig and ITIM domains"], ["CFD", "− 0.36627", "0.026073", "0.026073", "− 2.33053", "Down", "Complement factor D"], ["CCL18", "− 0.42077", "0.026944", "0.026944", "− 2.3161", "Down", "C–C motif chemokine ligand 18"], ["PLAU", "− 0.34086", "0.028132", "0.028132", "− 2.29706", "Down", "Plasminogen activator, urokinase"], ["PTPN22", "− 0.20086", "0.028829", "0.028829", "− 2.28623", "Down", "Protein tyrosine phosphatase non-receptor type 22"], ["TOLLIP", "− 0.27377", "0.028911", "0.028911", "− 2.28497", "Down", "Toll interacting protein"], ["CXCR2", "− 0.49195", "0.029438", "0.029438", "− 2.27696", "Down", "C-X-C motif chemokine receptor 2"], ["CCL20", "− 0.34555", "0.029871", "0.029871", "− 2.27048", "Down", "C–C motif chemokine ligand 20"], ["IL12A", "− 0.40759", "0.03046", "0.03046", "− 2.26179", "Down", "Interleukin 12A"], ["IL10", "− 0.33555", "0.03205", "0.03205", "− 2.23904", "Down", "Interleukin 10"], ["LILRA1", "− 0.26991", "0.033542", "0.033542", "− 2.21862", "Down", "leukocyte immunoglobulin like receptor A1"], ["PTPN6", "− 0.16109", "0.034722", "0.034722", "− 2.20304", "Down", "protein tyrosine phosphatase non-receptor type 6"], ["CCL19", "− 0.37718", "0.035605", "0.035605", "− 2.19168", "Down", "C–C motif chemokine ligand 19"], ["IKBKAP", "− 0.15505", "0.035624", "0.035624", "− 2.19144", "Down", "IκB kinase complex-associated protein"], ["TNFRSF9", "− 0.50786", "0.036235", "0.036235", "− 2.18372", "Down", "TNF receptor superfamily member 9"], ["TCF7", "− 0.60091", "0.036564", "0.036564", "− 2.17963", "Down", "Transcription factor 7"], ["HLA-DMA", "− 0.30777", "0.036925", "0.036925", "− 2.17516", "Down", "Major histocompatibility complex, class II, DM alpha"], ["CXCL12", "− 0.69291", "0.037168", "0.037168", "− 2.17218", "Down", "C-X-C motif chemokine ligand 12"], ["MBL2", "− 0.37009", "0.037623", "0.037623", "− 2.16664", "Down", "Mannose binding lectin 2"], ["IKZF2", "− 0.46655", "0.039489", "0.039489", "− 2.14452", "Down", "IKAROS family zinc finger 2"], ["BCAP31", "− 0.10632", "0.04075", "0.04075", "− 2.13009", "Down", "B cell receptor associated protein 31"], ["HLA-DRB1", "− 1.39495", "0.041403", "0.041403", "− 2.12278", "Down", "Major histocompatibility complex, class II, DR beta 1"], ["IRAK4", "− 0.23727", "0.041428", "0.041428", "− 2.12251", "Down", "Interleukin 1 receptor associated kinase 4"], ["CXCR1", "− 0.49741", "0.041833", "0.041833", "− 2.11802", "Down", "C-X-C motif chemokine receptor 1"], ["PTK2", "− 0.33609", "0.043242", "0.043242", "− 2.10272", "Down", "Protein tyrosine kinase 2"], ["CD45R0", "− 0.46514", "0.043373", "0.043373", "− 2.10132", "Down", "A member of leucocyte common antigen family"]], "row_count": 325, "column_count": 7, "numeric_cells": 1605, "header_rows": 1, "locator": "section[12]/table-wrap[1]#Tab1"}}, {"id": "asset:table:pmid:33251083:10", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:b7239eaa56eb9da9deefd70f1c000d77539072c6a251173f715314d5547a318e", "bytes": 10374, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[13]/table-wrap[1]#Tab2", "version": null, "note": "The enriched pathway terms of the up regulated differentially expressed genes", "structure": {"pmcid": "PMC7679428", "section_index": 13, "section_title": "Pathway enrichment analysis for DEGs", "row_count": 73, "column_count": 8}, "table": {"label": "Table 2", "caption": "The enriched pathway terms of the up regulated differentially expressed genes", "rows": [["KEGG"], ["Pathway ID", "Pathway Name", "P-value", "FDR B&H", "FDR B&Y", "Bonferroni", "Gene Count", "Gene"], ["213306", "Measles", "3.21E − 17", "4.46E − 15", "2.46E − 14", "4.46E − 15", "16", "CCND3, JAK1, JAK2, IFIH1, TRAF6, IKBKE, TLR2, IRF7, FYN, IL2RG, STAT1, TP53, STAT3, MX1, STAT5B, IFNAR2"], ["377873", "Herpes simplex infection", "1.19E − 13", "8.24E − 12", "4.54E − 11", "1.65E − 11", "15", "JAK1, JAK2, IFIH1, TRAF2, TRAF6, HLA-A, IKBKE, TLR2, C1QBP, CCL5, IRF7, IKBKB, STAT1, TP53, IFNAR2"], ["83079", "Natural killer cell mediated cytotoxicity", "5.40E − 13", "2.50E − 11", "1.38E − 10", "7.51E − 11", "13", "KLRK1, CD247, HLA-A, GZMB, HRAS, LCP2, ITGAL, FYN, ITGB2, KLRC1, ZAP70, KLRD1, IFNAR2"], ["193147", "Osteoclast differentiation", "1.85E − 10", "3.32E − 09", "1.83E − 08", "2.57E − 08", "11", "JAK1, TRAF2, TRAF6, LILRB2, LILRA6, SOCS1, IKBKB, LCP2, FYN, STAT1, IFNAR2"], ["83077", "Jak-STAT signaling pathway", "1.31E − 09", "1.83E − 08", "1.01E − 07", "1.83E − 07", "11", "CCND3, JAK1, JAK2, HRAS, SOCS1, IL2RG, STAT1, STAT3, STAT4, STAT5B, IFNAR2"], ["217173", "Influenza A", "3.94E − 09", "4.56E − 08", "2.51E − 07", "5.47E − 07", "11", "JAK1, JAK2, IFIH1, IKBKE, CCL5, IRF7, IKBKB, STAT1, NLRP3, MX1, IFNAR2"], ["373901", "HTLV-I infection", "2.27E − 08", "2.11E − 07", "1.16E − 06", "3.16E − 06", "12", "CCND3, JAK1, HLA-A, HRAS, XBP1, CTNNB1, IKBKB, ITGAL, ITGB2, IL2RG, TP53, STAT5B"], ["658418", "Viral carcinogenesis", "2.16E − 07", "1.67E − 06", "9.20E − 06", "3.00E − 05", "10", "CCND3, JAK1, TRAF2, HLA-A, HRAS, IRF7, CCR5, TP53, STAT3, STAT5B"], ["83080", "T cell receptor signaling pathway", "2.05E − 06", "1.36E − 05", "7.47E − 05", "2.85E − 04", "7", "PDCD1, CD247, HRAS, IKBKB, LCP2, FYN, ZAP70"], ["125138", "Viral myocarditis", "2.21E − 05", "1.18E − 04", "6.51E − 04", "3.07E − 03", "5", "ABL1, HLA-A, ITGAL, FYN, ITGB2"], ["213780", "Tuberculosis", "7.57E − 05", "3.63E − 04", "2.00E − 03", "1.05E − 02", "7", "JAK1, JAK2, TRAF6, TLR2, CLEC7A, ITGB2, STAT1"], ["83051", "Cytokine-cytokine receptor interaction", "1.59E − 04", "6.69E − 04", "3.69E − 03", "2.21E − 02", "8", "CCR1, CCL5, CCR5, IL18RAP, IL2RG, IL18R1, CX3CR1, IFNAR2"], ["152665", "Malaria", "1.79E − 04", "7.32E − 04", "4.04E − 03", "2.49E − 02", "4", "KLRK1, TLR2, ITGAL, ITGB2"], ["Pathway interaction database"], ["137922", "IL12-mediated signaling events", "1.37E − 17", "1.56E − 15", "8.29E − 15", "1.56E − 15", "13", "JAK2, CD247, HLA-A, TBX21, GZMB, SOCS1, CCR5, IL18RAP, IL2RG, IL18R1, STAT1, STAT3, STAT4"], ["137976", "IL2-mediated signaling events", "5.15E − 10", "2.94E − 08", "1.56E − 07", "5.88E − 08", "8", "JAK1, IKZF3, SOCS1, FYN, IL2RG, STAT1, STAT3, STAT5B"], ["138055", "TCR signaling in naive CD8 + T cells", "9.79E − 09", "2.35E − 07", "1.25E − 06", "1.12E − 06", "7", "TRAF6, CD247, HLA-A, IKBKB, LCP2, FYN, ZAP70"], ["138071", "PDGFR-beta signaling pathway", "6.28E − 07", "7.16E − 06", "3.81E − 05", "7.16E − 05", "6", "ABL1, HRAS, FYN, STAT1, STAT3, STAT5B"], ["137988", "IL2 signaling events mediated by STAT5", "2.52E − 05", "2.21E − 04", "1.17E − 03", "2.87E − 03", "4", "CCND3, JAK1, IL2RG, STAT5B"], ["138019", "p75(NTR)-mediated signaling", "5.25E − 03", "2.32E − 02", "1.23E − 01", "5.99E − 01", "3", "TRAF6, IKBKB, TP53"], ["138021", "Paxillin-dependent events mediated by a4b1", "5.29E − 03", "2.32E − 02", "1.23E − 01", "6.03E − 01", "2", "ITGAL, ITGB2"], ["137940", "Signaling events mediated by VEGFR1 and VEGFR2", "5.75E − 03", "2.43E − 02", "1.29E − 01", "6.55E − 01", "3", "HRAS, CTNNB1, FYN"], ["137983", "ALK2 signaling events", "6.18E − 02", "1.22E − 01", "6.47E − 01", "1.00E + 00", "1", "SMAD5"], ["138046", "Syndecan-1-mediated signaling events", "9.40E − 02", "1.70E − 01", "9.04E − 01", "1.00E + 00", "1", "CCL5"], ["REACTOME"], ["1269310", "Cytokine Signaling in Immune system", "3.94E − 16", "2.05E − 13", "1.40E − 12", "2.05E − 13", "28", "JAK1, JAK2, TRAF2, TRAF6, HLA-A, BST2, HRAS, PSMB9, GBP1, SOCS1, CCR1, IRF5, CCL5, IRF7, CCR5, IKBKB, FYN, IFI35, IL18RAP, ITGB2, IL2RG, IL18R1, STAT1, TP53, STAT3, MX1, STAT5B, IFNAR2"], ["1269203", "Innate Immune System", "1.61E − 13", "4.19E − 11", "2.86E − 10", "8.38E − 11", "32", "KLRK1, ATG5, JAK1, JAK2, IFIH1, TRAF2, TRAF6, CD247, ABL1, HLA-A, IKBKE, BST2, LILRB2, TLR2, HRAS, PSMB9, CLEC7A, SOCS1, C2, IRF7, GNLY, CTNNB1, IKBKB, LCP2, ITGAL, FYN, ITGB2, IL2RG, KLRD1, TP53, NLRP3, CEACAM1"], ["1269318", "Signaling by Interleukins", "9.69E − 11", "1.06E − 08", "7.24E − 08", "5.04E − 08", "19", "JAK1, JAK2, TRAF6, HRAS, PSMB9, SOCS1, CCR1, CCL5, CCR5, IKBKB, FYN, IL18RAP, ITGB2, IL2RG, IL18R1, STAT1, TP53, STAT3, STAT5B"], ["1269171", "Adaptive Immune System", "1.02E − 10", "1.06E − 08", "7.24E − 08", "5.30E − 08", "23", "KLRK1, PDCD1, TRAF6, CD247, ZBTB16, HLA-A, LILRB2, TLR2, LAG3, HRAS, LILRA6, PSMB9, SOCS1, SLAMF7, IKBKB, LCP2, ITGAL, FYN, ITGB2, KLRC1, ZAP70, KLRD1, TP53"], ["1269340", "Hemostasis", "5.49E − 07", "2.20E − 05", "1.50E − 04", "2.86E − 04", "16", "JAK1, JAK2, ABL1, CD99, HRAS, C1QBP, SERPING1, IRF7, LCP2, ITGAL, FYN, ITGB2, IL2RG, TP53, CEACAM1, GP1BB"], ["1269260", "TRAF3-dependent IRF activation pathway", "9.84E − 05", "1.55E − 03", "1.06E − 02", "5.12E − 02", "3", "IFIH1, IKBKE, IRF7"], ["1268854", "Disease", "1.26E − 03", "1.24E − 02", "8.44E − 02", "6.55E − 01", "13", "JAK2, CD247, HLA-A, TLR2, HRAS, PSMB9, CCR5, CTNNB1, IKBKB, FYN, STAT1, STAT3, STAT5B"], ["1268855", "Diseases of signal transduction", "1.35E − 03", "1.30E − 02", "8.90E − 02", "7.03E − 01", "8", "JAK2, HRAS, PSMB9, CTNNB1, FYN, STAT1, STAT3, STAT5B"], ["1269562", "Leukotriene receptors", "2.86E − 02", "8.96E − 02", "6.12E − 01", "1.00E + 00", "1", "LTB4R"], ["1269248", "Activation of C3 and C5", "3.98E − 02", "1.18E − 01", "8.08E − 01", "1.00E + 00", "1", "C2"], ["MSigDB C2 BIOCARTA (v6.0)"], ["M8066", "IL22 Soluble Receptor Signaling Pathway", "2.31E − 10", "3.56E − 08", "2.00E − 07", "3.56E − 08", "6", "JAK1, JAK2, STAT1, STAT3, STAT4, STAT5B"], ["M13494", "Bioactive Peptide Induced Signaling Pathway", "4.38E − 09", "3.38E − 07", "1.90E − 06", "6.75E − 07", "7", "JAK2, HRAS, FYN, STAT1, STAT3, STAT4, STAT5B"], ["M1462", "CTL mediated immune response against target cells", "1.61E − 08", "7.50E − 07", "4.21E − 06", "2.48E − 06", "5", "CD247, HLA-A, GZMB, ITGAL, ITGB2"], ["M6231", "NO2-dependent IL 12 Pathway in NK cells", "2.31E − 06", "3.24E − 05", "1.82E − 04", "3.56E − 04", "4", "JAK2, CD247, CCR5, STAT4"], ["M13863", "MAPKinaseSignaling Pathway", "1.06E − 05", "1.08E − 04", "6.09E − 04", "1.63E − 03", "6", "TRAF2, MAP4K1, HRAS, IKBKB, MAP4K2, STAT1"], ["M6427", "T Helper Cell Surface Molecules", "6.45E − 05", "4.73E − 04", "2.66E − 03", "9.93E − 03", "3", "CD247, ITGAL, ITGB2"], ["M4047", "Selective expression of chemokine receptors during T-cell polarization", "6.08E − 04", "3.12E − 03", "1.75E − 02", "9.37E − 02", "3", "CCR1, CCR5, IL18R1"], ["M11358", "Tumor Suppressor Arf Inhibits Ribosomal Biogenesis", "4.24E − 03", "1.28E − 02", "7.19E − 02", "6.53E − 01", "2", "ABL1, TP53"], ["M17400", "ALK in cardiac myocytes", "1.93E − 02", "4.37E − 02", "2.45E − 01", "1.00E + 00", "2", "CTNNB1, SMAD5"], ["M5885", "Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors", "8.19E − 01", "8.30E − 01", "1.00E + 00", "1.00E + 00", "3", "CLEC7A, SERPING1, CCL5"], ["Panther DB"], ["P00038", "JAK/STAT signaling pathway", "1.76E − 12", "5.64E − 11", "2.29E − 10", "5.64E − 11", "7", "JAK1, JAK2, SOCS1, STAT1, STAT3, STAT4, STAT5B"], ["P00031", "Inflammation mediated by chemokine and cytokine signaling pathway", "1.44E − 06", "2.31E − 05", "9.37E − 05", "4.62E − 05", "9", "JAK2, CCRL2, CCR1, CCL5, CCR5, IKBKB, ITGAL, CX3CR1, STAT3"], ["P00054", "Toll receptor signaling pathway", "1.94E − 04", "1.03E − 03", "4.19E − 03", "6.20E − 03", "4", "TRAF6, IKBKE, TLR2, IKBKB"], ["P00006", "Apoptosis signaling pathway", "3.03E − 04", "1.39E − 03", "5.62E − 03", "9.69E − 03", "5", "TRAF2, GZMB, IKBKB, MAP4K2, TP53"], ["P00010", "B cell activation", "4.43E − 02", "9.45E − 02", "3.83E − 01", "1.00E + 00", "2", "HRAS, IKBKB"], ["P00052", "TGF-beta signaling pathway", "9.73E − 02", "1.67E − 01", "6.78E − 01", "1.00E + 00", "2", "HRAS, SMAD5"], ["P00011", "Blood coagulation", "2.07E − 01", "2.89E − 01", "1.00E + 00", "1.00E + 00", "1", "GP1BB"], ["P00012", "Cadherin signaling pathway", "2.34E − 01", "3.00E − 01", "1.00E + 00", "1.00E + 00", "2", "CTNNB1, FYN"], ["P00057", "Wntsignaling pathway", "2.59E − 01", "3.07E − 01", "1.00E + 00", "1.00E + 00", "3", "CTNNB1, TP53, SMAD5"], ["P00056", "VEGF signaling pathway", "2.86E − 01", "3.27E − 01", "1.00E + 00", "1.00E + 00", "1", "HRAS"], ["Pathway Ontology"], ["PW:0000125", "G protein signaling", "5.82E − 03", "3.10E − 02", "1.26E − 01", "1.86E − 01", "1", "LTB4R"], ["PW:0000297", "platelet-derived growth factor signaling", "5.82E − 03", "3.10E − 02", "1.26E − 01", "1.86E − 01", "1", "JAK2"], ["PW:0000143", "insulin signaling", "1.05E − 02", "3.36E − 02", "1.36E − 01", "3.37E − 01", "2", "SOCS1, STAT5B"], ["PW:0000330", "Bone morphogenetic proteins signaling", "2.86E − 02", "6.53E − 02", "2.65E − 01", "9.15E − 01", "1", "SMAD5"], ["PW:0000599", "altered canonical Wntsignaling", "2.86E − 02", "6.53E − 02", "2.65E − 01", "9.15E − 01", "1", "CTNNB1"], ["PW:0000508", "platelet aggregation", "3.42E − 02", "6.84E − 02", "2.78E − 01", "1.00E + 00", "1", "GP1BB"], ["PW:0000234", "innate immune response", "6.18E − 02", "1.10E − 01", "4.46E − 01", "1.00E + 00", "1", "TLR2"], ["PW:0000278", "autophagy", "1.04E − 01", "1.39E − 01", "5.65E − 01", "1.00E + 00", "1", "ATG10"], ["PW:0000243", "vascular endothelial growth factor signaling", "1.30E − 01", "1.49E − 01", "6.03E − 01", "1.00E + 00", "1", "FYN"], ["PW:0000490", "transforming growth factor-beta Smad dependent signaling", "1.40E − 01", "1.55E − 01", "6.28E − 01", "1.00E + 00", "1", "RUNX1"], ["SMPDB"], ["SMP00320", "Intracellular Signalling Through Adenosine Receptor A2a and Adenosine", "1.55E − 02", "2.46E − 02", "4.52E − 02", "4.65E − 02", "2", "HRAS, IKBKB"], ["SMP00391", "Insulin Signalling", "1.89E − 01", "1.89E − 01", "3.46E − 01", "5.66E − 01", "1", "HRAS"]], "row_count": 73, "column_count": 8, "numeric_cells": 420, "header_rows": 2, "locator": "section[13]/table-wrap[1]#Tab2"}}, {"id": "asset:table:pmid:33251083:11", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:307d19ecb0dfe452f834715a6c814a8c922a41eba5ff771952acf5734e1660b5", "bytes": 17321, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[13]/table-wrap[2]#Tab3", "version": null, "note": "The enriched pathway terms of the down regulated differentially expressed genes", "structure": {"pmcid": "PMC7679428", "section_index": 13, "section_title": "Pathway enrichment analysis for DEGs", "row_count": 91, "column_count": 8}, "table": {"label": "Table 3", "caption": "The enriched pathway terms of the down regulated differentially expressed genes", "rows": [["BIOCYC", "", "", "", "", "", "", ""], ["Pathway ID", "Pathway Name", "P-value", "FDR B&H", "FDR B&Y", "Bonferroni", "Gene Count", "Gene"], ["703092", "Citrulline-nitric oxide cycle", "8.83E − 02", "2.53E − 01", "8.24E − 01", "1.00E + 00", "1", "NOS2"], ["142419", "Phospholipases", "9.82E − 02", "2.53E − 01", "8.24E − 01", "1.00E + 00", "1", "PLA2G2E, PLA2G2A"], ["545273", "Glycoaminoglycan-protein linkage region biosynthesis", "1.05E − 01", "2.53E − 01", "8.24E − 01", "1.00E + 00", "1", "B3GAT1"], ["545323", "Urate biosynthesis/inosine 5′-phosphate degradation", "1.05E − 01", "2.53E − 01", "8.24E − 01", "1.00E + 00", "1", "NT5E"], ["142383", "Tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde", "1.21E − 01", "2.53E − 01", "8.24E − 01", "1.00E + 00", "1", "IDO1"], ["KEGG", "", "", "", "", "", "", ""], ["83051", "Cytokine-cytokine receptor interaction", "3.05E − 61", "5.54E − 59", "3.21E − 58", "5.54E − 59", "69", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, TNFRSF9, IL17A, PDGFB, TNFSF12, IL17B, TNFRSF14, TNFRSF10C, CCL26,IL17F, TNFRSF4, IL22RA2, IL21, CCL7, CCR6, CCL11, CCL13, CCR8, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, KIT, CX3CL1, CXCL12, IL19, CCR10, XCR1, CXCL13, PPBP, IL23A, IFNA2, IFNAR1, IFNB1, IFNG, TGFBR1, LIF, CSF1R, CSF2, CSF2RB, CSF3R, IL20, IL22,, CD40, TNFRSF13C, LTA, IL1RAP, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7, IL26, CXCR1, IL9, CXCR2"], ["83078", "Hematopoietic cell lineage", "4.22E − 35", "3.84E − 33", "2.22E − 32", "7.67E − 33", "34", "HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, CD55, MME, KIT, CR2, TFRC, CD1A, CD3E, CSF1R, CSF2, CD8A, CD9, CSF3R, CD19, MS4A1, CD22, CD34, CD44, CD59, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7"], ["842771", "Inflammatory bowel disease (IBD)", "4.58E − 32", "2.78E − 30", "1.61E − 29", "8.34E − 30", "28", "IL10, IL12A, IL12B, IL13, IL17A, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, GATA3, IL17F, STAT6, IL21, RELA, IL23A, IFNG, IL22, RORC, IL2, IL4, IL4R, IL5, IL6"], ["83077", "Jak-STAT signaling pathway", "4.56E − 26", "1.19E − 24", "6.86E − 24", "8.30E − 24", "33", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, BCL2, STAT5A, STAT6, PTPN6, IL22RA2, IL21, IL19, IL23A, IFNA2, IFNAR1, IFNB1, IFNG, LIF, CSF2, CSF2RB, CSF3R, IL20, IL22, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7, IL9"], ["213780", "Tuberculosis", "3.41E − 25", "6.89E − 24", "3.99E − 23", "6.20E − 23", "34", "IL10, IL10RA, IL12A, IL12B, CEBPB, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, BCL2, CD209, BID, FCGR2A, FCGR2B, CARD9, NOS2, CASP3, RELA, TLR9, IL23A, IFNA2, IFNB1, IFNG, TIRAP, IRAK4, CD74, MAPK11, CTSS, IL6"], ["83120", "Asthma", "4.56E − 24", "8.30E − 23", "4.80E − 22", "8.30E − 22", "18", "IL10, IL13, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, FCER1A, CCL11, CD40, IL3, IL4, IL5, IL9"], ["125138", "Viral myocarditis", "2.26E − 16", "2.06E − 15", "1.19E − 14", "4.12E − 14", "17", "HLA-B, HLA-C, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, CD55, BID, CASP3, CD80, CD86, CD40"], ["373901", "HTLV-I infection", "2.85E − 15", "2.35E − 14", "1.36E − 13", "5.18E − 13", "29", "HLA-B, PDGFB, HLA-C, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, ETS1, STAT5A, VCAM1, RELA, RELB, LCK, SLC2A1, TGFBR1, CD3E, CSF2, EGR1, EGR2, CD40, TNFRSF13C, LTA, IL2, IL6"], ["213306", "Measles", "4.04E − 12", "2.53E − 11", "1.47E − 10", "7.35E − 10", "19", "IL12A, IL12B, IL13, CD46, TNFRSF10C, CD209, STAT5A, FCGR2B, RELA, TLR9, IFNA2, IFNAR1, IFNB1, IFNG, CD3E, IRAK4, IL2, IL4, IL6"], ["83074", "Antigen processing and presentation", "7.12E − 12", "4.32E − 11", "2.50E − 10", "1.30E − 09", "15", "HLA-B, HLA-C, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, IFNG, CD8A, CD74, CTSS"], ["217173", "Influenza A", "4.98E − 11", "2.75E − 10", "1.59E − 09", "9.07E − 09", "20", "IL12A, IL12B, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1,HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, TNFRSF10C, RELA, IFNA2, IFNAR1, IFNB1, IFNG, IRAK4, MAPK11, IL6"], ["Pathway interaction database", "", "", "", "", "", "", ""], ["137933", "IL4-mediated signaling events", "7.74E − 16", "8.36E − 14", "4.40E − 13", "8.36E − 14", "17", "IL10, IL13RA1, CEBPB, AICDA, ETS1, CCL26, STAT5A, STAT6, PTPN6, PIGR, CCL11, THY1, EGR2, LTA, IL4, IL4R, IL5"], ["137922", "IL12-mediated signaling events", "9.23E − 15", "4.99E − 13", "2.62E − 12", "9.97E − 13", "16", "IL12A, IL12B, HLA-DRA, HLA-DRB1, STAT5A, STAT6, EOMES, NOS2, RELA, RELB, LCK, IFNG, CD3E, CD8A, IL2, IL4"], ["138000", "IL23-mediated signaling events", "1.32E − 12", "4.75E − 11", "2.50E − 10", "1.42E − 10", "12", "IL12B, IL17A, IL17F, STAT5A, NOS2, IL19, RELA, IL23A, IFNG, CD3E, IL2, IL6"], ["137929", "IL27-mediated signaling events", "1.43E − 11", "3.87E − 10", "2.04E − 09", "1.55E − 09", "10", "IL12A, IL12B, IL17A, GATA3, STAT5A, IFNG, EBI3, IL2, IL6, IL27"], ["138058", "BCR signaling pathway", "3.00E − 07", "4.05E − 06", "2.13E − 05", "3.24E − 05", "10", "ETS1, PTPN6, FCGR2B, BTK, POU2F2, RELA, CD19, CD22, CD79A, CD79B"], ["138055", "TCR signaling in naive CD8 + T cells", "2.28E − 04", "1.30E − 03", "6.82E − 03", "2.46E − 02", "6", "PTPN6, LCK, CD3E, CD8A, CD80, CD86"], ["137939", "Direct p53 effectors", "2.95E − 03", "1.33E − 02", "7.00E − 02", "3.18E − 01", "8", "SPP1, BCL2, TNFRSF10C, BID, CD82, MAP4K4, CX3CL1, LIF"], ["138081", "FAS (CD95) signaling pathway", "3.67E − 03", "1.42E − 02", "7.46E − 02", "3.97E − 01", "4", "BID, BTK, CASP3, MAPK11"], ["137995", "HIV-1 Nef: Negative effector of Fas and TNF-alpha", "3.67E − 03", "1.42E − 02", "7.46E − 02", "3.97E − 01", "4", "BCL2, BID, CASP3, RELA"], ["137944", "IL1-mediated signaling events", "2.58E − 02", "6.45E − 02", "3.40E − 01", "1.00E + 00", "3", "TOLLIP, RELA, IRAK4"], ["REACTOME", "", "", "", "", "", "", ""], ["1269310", "Cytokine Signaling in Immune system", "3.81E − 46", "2.02E − 43", "1.39E − 42", "2.02E − 43", "86", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, IL16, TRAF3, TNFRSF9, IL17A, HLA-B, PDGFB, HLA-C, TNFSF12, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, TNFRSF14, GATA3, PSMB10, BCL2, PTAFR, IL1RL2, IL17F, PTK2, STAT5A, STAT6, TNFRSF4, PTPN6, IL22RA2, TOLLIP, CCL11, CCL19, CCL20, CCL22, KIT, NOS2, VCAM1, IL19, RAG1, RAG2, ZEB1, FN1, DUSP4, IRF8, CASP3, RELA, RELB, LCK, IL23A, S1PR1, IFNA2, IFNAR1, IFNB1, IFNG, LIF, CSF1R, CSF2, CSF2RB, CSF3R, EBI3, EGR1, IL20, CD80, CD86, IL22, CD40, IRAK4, CD44, TNFRSF13C, LTA, RORC, IL1RAP, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7, IL27, IL9"], ["1269318", "Signaling by Interleukins", "2.98E − 33", "7.91E − 31", "5.42E − 30", "1.58E − 30", "62", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, IL16, IL17A, PDGFB, GATA3, PSMB10, BCL2, PTAFR, IL1RL2, IL17F, PTK2, STAT5A, STAT6, PTPN6, IL22RA2, TOLLIP, CCL11, CCL19, CCL20, CCL22, KIT,NOS2, VCAM1, IL19, RAG1, RAG2, ZEB1, FN1, DUSP4, CASP3, RELA, LCK, IL23A, S1PR1, LIF, CSF1R, CSF2, CSF2RB, CSF3R, EBI3, IL20, CD80, CD86, IL22, IRAK4, RORC, IL1RAP, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R,IL7, IL27, IL9"], ["1269203", "Innate Immune System", "4.93E − 25", "8.72E − 23", "5.98E − 22", "2.62E − 22", "82", "MASP1, TRAF3, HLA-B, PDGFB, HLA-C, MAPKAPK2, CTSC, PECAM1, MBL2, PSMB10, CD55, CD46, BCL2, DEFB103B, PTAFR, CD209, PTK2, STAT6, DEFB1, DEFB4A, CFD, PTPN6, FCAR, FCER1A, PIGR, FCGR2A, CARD9, BTK, MIF, PLA2G2A, TOLLIP, C1R, C1S, C4A, PLAU, C4BPA, CCR6, MME, C6, C7, C8A, C8B, C9, KIT, NOS2, GPI, LILRA3, VTN, CLEC6A, FN1, ATG7, ITLN1, DUSP4, ICAM2, ICAM3, RELA, RELB, TLR9, LCK, PPBP, CFI, IFNA2, LGALS3, IFNB1, CSF2, CSF2RB, CD19, SIGIRR, CD80, CD86, TIRAP, IRAK4, CD44, CD59, MAPK11, IL2, IL3, IL5, CTSS, CXCR1, MASP2, CXCR2"], ["1269171", "Adaptive Immune System", "1.51E − 15", "1.15E − 13", "7.86E − 13", "8.03E − 13", "52", "HLA-B, PDGFB, HLA-C, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, CTSC, HLA-DRB1, TNFRSF14, PSMB10, PTPN22, CD209, PTPN6, SLAMF6, FCGR2B, BTK, KIT, KLRB1, LILRB5, VCAM1, ICOSLG, LILRA1, LILRA3, LILRA2, ATG7, ICAM2, ICAM3, ICAM4, RELA, BTLA, LCK, CD1A, CD3E, CD8A, CD19, CD22, CD80, CD86, ICAM5, TIRAP, CD34, CD40, CD74, CD79A, CD79B, CTLA4, CTSS"], ["1269201", "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell", "5.01E − 14", "2.66E − 12", "1.82E − 11", "2.66E − 11", "21", "HLA-B, HLA-C, SLAMF6, FCGR2B, KLRB1, LILRB5, VCAM1, LILRA1, LILRA3, LILRA2, ICAM2, ICAM3, ICAM4, CD1A, CD3E, CD8A, CD19, CD22, ICAM5, CD34, CD40"], ["1269546", "Peptide ligand-binding receptors", "6.17E − 08", "1.82E − 06", "1.25E − 05", "3.27E − 05", "17", "CCR6, CCL13, CCR8, CCL16, CCL19, CCL20, CXCL11, XCL1, CX3CL1, CXCL12, CCR10, XCR1, CXCL13, PPBP, EDNRB, CXCR1, CXCR2"], ["1269545", "Class A/1 (Rhodopsin-like receptors)", "4.71E − 07", "1.14E − 05", "7.79E − 05", "2.50E − 04", "21", "PTAFR, PTGER4, CCR6, CCL13,CCR8,CCL16, CCL19, CCL20, CXCL11, XCL1, CX3CL1, CXCL12, CCR10, XCR1, CXCL13, GPR183, PPBP, S1PR1, EDNRB, CXCR1, CXCR2"], ["1269340", "Hemostasis", "1.15E − 04", "1.47E − 03", "1.01E − 02", "6.09E − 02", "26", "CD244, PDGFB, PECAM1, GATA3, PTK2, CFD, PTPN6, MIF, PLAU, NOS2, SELE, SELPLG, FN1, LCK, PPBP, IFNA2, IFNB1, CSF2, CSF2RB, CD9, CD44, CD48, CD74, IL2, IL3, IL5"], ["1269501", "MAPK family signaling cascades", "3.27E − 04", "3.40E − 03", "2.33E − 02", "1.74E − 01", "15", "PDGFB, PSMB10, PTK2, KIT, RAG1, RAG2, FN1, DUSP4, CSF2, CSF2RB, IL2, IL3, IL5, IL6, IL6R"], ["1269240", "Toll Like Receptor TLR6:TLR2 Cascade", "3.46E − 04", "3.40E − 03", "2.33E − 02", "1.84E − 01", "8", "MAPKAPK2, BTK, DUSP4, RELA, SIGIRR, TIRAP, IRAK4, MAPK11"], ["Gen MAPP", "", "", "", "", "", "", ""], ["MAP00400", "Phenylalanine tyrosine and tryptophan biosynthesis", "1.38E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "1", "BID"], ["MAP_kinase_activity", "MAP kinase activity", "1.38E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "1", "MAPK11"], ["MAP00010", "Glycolysis Gluconeogenesis", "2.47E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "2", "BID, GPI"], ["MAP00030", "Pentose phosphate", "2.70E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "1", "GPI"], ["MAP00590", "Prostaglandin and leukotriene metabolism", "2.96E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "1", "PLA2G2A"], ["MAP00500", "Starch and sucrose metabolism", "3.34E − 01", "5.02E − 01", "1.00E + 00", "1.00E + 00", "1", "GPI"], ["MAP00330", "Arginine and proline metabolism", "5.05E − 01", "5.81E − 01", "1.00E + 00", "1.00E + 00", "1", "NOS2"], ["MAP00380", "Tryptophan metabolism", "5.73E − 01", "5.81E − 01", "1.00E + 00", "1.00E + 00", "1", "IDO1"], ["MAP00561", "Glycerolipid metabolism", "5.81E − 01", "5.81E − 01", "1.00E + 00", "1.00E + 00", "1", "PLA2G2A"], ["MSigDB C2 BIOCARTA (v6.0)", "", "", "", "", "", "", ""], ["M5883", "Genes encoding secreted soluble factors", "4.86E − 27", "7.82E − 25", "4.43E − 24", "7.82E − 25", "46", "IL10, IL12A, IL12B, IL13, IL16, IL17A, PDGFB, TNFSF12, IL17B, CCL26, IL17F, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, IL19, CXCL13, PPBP, IL23A, IFNA2, IFNB1, IFNG, LIF, CSF2, EBI3, IL20, IL22, LTA, IL2, IL3, IL4, IL5, IL6, IL7, IL26, IL9"], ["M17406", "Cytokine Network", "2.71E − 22", "2.18E − 20", "1.24E − 19", "4.36E − 20", "15", "IL10, IL12A, IL12B, IL13, IL16, IL17A, IFNB1, IFNG, LTA, IL2, IL3, IL4, IL5, IL6, IL9"], ["M6910", "Cytokines and Inflammatory Response", "5.19E − 21", "2.78E − 19", "1.58E − 18", "8.35E − 19", "16", "IL10, IL12A, IL12B, IL13, HLA-DRA, HLA-DRB1, IFNB1, IFNG, CSF2, LTA, IL2, IL3, IL4, IL5, IL6, IL7"], ["M5885", "Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors", "7.80E − 21", "3.14E − 19", "1.78E − 18", "1.26E − 18", "57", "IL10, IL12A, IL12B, IL13, MASP1, IL16, IL17A, PDGFB, TNFSF12, CTSC, IL17B, MBL2, CCL26, IL17F, CD209, PLAU, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, IL19, CLEC6A, ITLN1, CXCL13, ITLN2, PPBP, IL23A, IFNA2, LGALS3, IFNB1, IFNG, LIF, CSF2, EBI3, IL20, IL22, LTA, IL2, IL3, IL4, IL5, CTSS, IL6, IL7, IL26, IL9, MASP2"], ["M5889", "Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins", "4.62E − 17", "1.49E − 15", "8.43E − 15", "7.44E − 15", "61", "IL10, IL12A, IL12B, IL13, MASP1, IL16, IL17A, PDGFB, TNFSF12, SPP1, CTSC,IL17B, MBL2, CCL26, IL17F, CD209, PLAU, CCL7,CCL11, CCL13, CCL15,CCL16, CCL18, CCL19, CCL20,CCL22, CCL24, CXCL11,XCL1, CX3CL1, CXCL12, IL19, VTN,CLEC6A, FN1, ITLN1, CXCL13,ITLN2, PPBP, IL23A,IFNA2, LGALS3, IFNB1, IFNG, TGFBI, LIF, CSF2, EBI3, IL20, IL22, LTA, IL2, IL3, IL4, IL5, CTSS, IL6, IL7, IL26, IL9, MASP2"], ["M1467", "The Co-Stimulatory Signal During T-cell Activation", "4.81E − 11", "7.03E − 10", "3.98E − 09", "7.74E − 09", "9", "HLA-DRA, HLA-DRB1, ICOSLG, LCK, CD3E, CD80, CD86, CTLA4, IL2"], ["M3952", "Cells and Molecules involved in local acute inflammatory response", "1.02E − 05", "7.46E − 05", "4.22E − 04", "1.64E − 03", "5", "C6, C7, VCAM1, SELPLG,IL6"], ["M18215", "Role of Tob in T-cell activation", "3.16E − 05", "2.21E − 04", "1.25E − 03", "5.08E − 03", "5", "IFNG, TGFBR1, CD3E, IL2, IL4"], ["M13968", "HIV-I Nef: negative effector of Fas and TNF", "6.46E − 04", "3.15E − 03", "1.78E − 02", "1.04E − 01", "6", "BCL2,PTK2, BID, CASP3, RELA, ARHGDIB"], ["M13247", "T Cytotoxic Cell Surface Molecules", "1.90E − 03", "6.80E − 03", "3.85E − 02", "3.06E − 01", "3", "CD3E, CD8A, THY1"], ["Panther DB", "", "", "", "", "", "", ""], ["P00036", "Interleukin signaling pathway", "6.51E − 19", "2.47E − 17", "1.05E − 16", "2.47E − 17", "22", "IL10,IL10RA, IL12A,IL13, IL13RA1, IL17A, MAPKAPK2, IL17F, STAT5A, STAT6, IL21, IL23A, IL2, IL4, IL4R, IL5, IL6, IL6R, IL7, CXCR1, IL9, CXCR2"], ["P00031", "Inflammation mediated by chemokine and cytokine signaling pathway", "4.36E − 07", "8.28E − 06", "3.50E − 05", "1.66E − 05", "16", "CCL26, CCL7, CCR6, CCL11, CCL13, CCR8, CCL18, CCL20, CCL22, CX3CL1, CCR10, XCR1, IFNAR1, IFNG, CXCR1, CXCR2"], ["P00053", "T cell activation", "7.23E − 05", "8.13E − 04", "3.44E − 03", "2.75E − 03", "8", "HLA-DPA1, HLA-DQA1, HLA-DRA, LCK, CD3E, CD80, CD86, CD74"], ["P00010", "B cell activation", "8.56E − 05", "8.13E − 04", "3.44E − 03", "3.25E − 03", "7", "PTPN6, BTK, CD19, CD22, CD79A, CD79B, MAPK11"], ["P00054", "Toll receptor signaling pathway", "2.14E − 03", "1.62E − 02", "6.86E − 02", "8.12E − 02", "5", "TOLLIP, RELA, TLR9, IFNB1, IRAK4"], ["P00006", "Apoptosis signaling pathway", "2.67E − 03", "1.69E − 02", "7.14E − 02", "1.01E − 01", "7", "BCL2, BID, BCL2L11, CASP3, RELA, RELB, LTA"], ["P00035", "Interferon-gamma signalingpathway", "1.42E − 02", "7.69E − 02", "3.25E − 01", "5.39E − 01", "3", "PTPN6, IFNG, MAPK11"], ["P00046", "Oxidative stress response", "5.17E − 02", "1.86E − 01", "7.88E − 01", "1.00E + 00", "3", "BCL2, DUSP4, MAPK11"], ["P00047", "PDGF signaling pathway", "8.39E − 02", "2.44E − 01", "1.00E + 00", "1.00E + 00", "5", "PDGFB, MAPKAPK2, ETS1, STAT5A, STAT6"], ["P00034", "Integrin signalling pathway", "5.94E − 01", "7.28E − 01", "1.00E + 00", "1.00E + 00", "3", "ITGAE, PTK2, FN1"], ["Pathway Ontology", "", "", "", "", "", "", ""], ["PW:0000104", "intrinsic apoptotic", "1.82E − 03", "7.63E − 02", "3.30E − 01", "7.63E − 02", "4", "BCL2, BID, BCL2L11, CASP3"], ["PW:0000515", "Interleukin-10 signaling", "7.84E − 01", "1.57E − 01", "6.78E − 01", "6.78E − 01", "1", "IL10"], ["PW:0000516", "Interleukin-6 signaling", "7.84E − 01", "1.57E − 01", "6.78E − 01", "6.78E − 01", "1", "IL6"], ["PW:0000499", "Nuclear Factor Kappa B signaling", "9.58E − 01", "1.60E − 01", "6.91E − 01", "6.91E − 01", "2", "RELA, RELB"], ["PW:0000009", "programmed cell death", "1.00E + 00", "1.80E − 01", "7.78E − 01", "7.78E − 01", "2", "BCL2, CASP3"], ["PW:0000102", "The extracellular signal-regulated RAF/MEK/ERK signaling", "8.14E − 02", "2.18E − 01", "9.44E − 01", "1.00E + 00", "2", "SPP1, S1PR1"], ["PW:0000529", "angiotensin (1-7) signaling", "8.83E − 02", "2.18E − 01", "9.44E − 01", "1.00E + 00", "1", "MME"], ["PW:0000106", "extrinsic apoptotic", "1.05E − 01", "2.45E − 01", "1.00E + 00", "1.00E + 00", "1", "CASP3"], ["PW:0000559", "hexosamine biosynthetic", "1.21E − 01", "2.55E − 01", "1.00E + 00", "1.00E + 00", "1", "GPI"], ["PW:0000228", "G protein signaling via Galphai family", "1.53E − 01", "2.80E − 01", "1.00E + 00", "1.00E + 00", "1", "S1PR1"], ["SMPDB", "", "", "", "", "", "", ""], ["SMP00094", "Sulindac Pathway", "1.21E − 01", "4.52E − 01", "1.00E + 00", "1.00E + 00", "1", "PLA2G2A"], ["SMP00040", "Glycolysis", "2.14E − 01", "4.52E − 01", "1.00E + 00", "1.00E + 00", "1", "GPI"], ["SMP00063", "Tryptophan Metabolism", "2.70E − 01", "4.52E − 01", "1.00E + 00", "1.00E + 00", "1", "IDO1"], ["SMP00379", "NifedipinePathway", "2.83E − 01", "4.52E − 01", "1.00E + 00", "1.00E + 00", "1", "EDNRB"], ["SMP00006", "Tyrosine Metabolism", "3.59E − 01", "4.84E − 01", "1.00E + 00", "1.00E + 00", "1", "MIF"], ["SMP00320", "Intracellular Signalling Through Adenosine Receptor A2a and Adenosine", "4.57E − 01", "4.84E − 01", "1.00E + 00", "1.00E + 00", "1", "MAPK11"]], "row_count": 91, "column_count": 8, "numeric_cells": 544, "header_rows": 2, "locator": "section[13]/table-wrap[2]#Tab3"}}, {"id": "asset:table:pmid:33251083:12", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:3d0cc2025b76ce360a2ebcd6f7a40ea02ca2add666d309680d150a2f033eabd0", "bytes": 8645, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[14]/table-wrap[1]#Tab4", "version": null, "note": "The enriched GO terms of the up regulated differentially expressed genes", "structure": {"pmcid": "PMC7679428", "section_index": 14, "section_title": "Gene ontology (GO) enrichment analysis for DEGs", "row_count": 31, "column_count": 9}, "table": {"label": "Table 4", "caption": "The enriched GO terms of the up regulated differentially expressed genes", "rows": [["GO ID", "CATEGORY", "GO Name", "P Value", "FDR B&H", "FDR B&Y", "Bonferroni", "Gene Count", "Gene"], ["GO:0002682", "BP", "Regulation of immune system process", "1.53E − 44", "5.68E − 41", "5.00E − 40", "5.68E − 41", "56", "KLRK1, ATG5, JAK1, JAK2, IFIH1, PDCD1, TRAF2, TRAF6, IKZF3, CD247, ZBTB16, ABL1, HLA-A, IKBKE, CD99, BST2, LILRB2, TBX21, TLR2, LAG3, HRAS, PSMB9, C1QBP, CLEC7A, SERPING1, XBP1, GBP1, SOCS1, C2, CCR1, IKZF1, CCL5, IRF7, CTNNB1, RUNX1, SLAMF7, IKBKB, LCP2, ITGAL, FYN, IL18RAP, ITGB2, IL2RG, IL18R1, KLRC1, ZAP70, GFI1, KLRD1, CX3CR1, STAT1, TP53, NLRP3, STAT3, STAT5B, CEACAM1, IFNAR2"], ["GO:0009607", "BP", "Response to biotic stimulus", "6.86E − 35", "6.36E − 32", "5.59E − 31", "2.54E − 31", "48", "KLRK1, ATG5, JAK1, JAK2, IFIH1, TRAF6, IKZF3, ATG10, ABL1, HLA-A, IKBKE, BST2, LILRB2, TBX21, TLR2, GZMB, LAG3, HRAS, PSMB9, C1QBP, CLEC7A, SERPING1, XBP1, GBP1, SOCS1, C2, IRF5, CCL5, IRF7, CCR5, GNLY, SLAMF7, IKBKB, FYN, IFI35, IL18RAP, ITGB2, MAP4K2, GFI1, KLRD1, CX3CR1, STAT1, TP53, NLRP3, MX1, STAT5B, CEACAM1, IFNAR2"], ["GO:0006952", "BP", "Defense response", "1.12E − 33", "5.92E − 31", "5.21E − 30", "4.14E − 30", "49", "KLRK1, JAK1, JAK2, IFIH1, TRAF6, HLA-A, IKBKE, BST2, LILRB2, TLR2, GZMB, LAG3, HRAS, PSMB9, C1QBP, CLEC7A, SERPING1, GBP1, CCRL2, SOCS1, C2, CCR1, IRF5, CCL5, IRF7, CCR5, GNLY, LTB4R, SLAMF7, IKBKB, ITGAL, FYN, IFI35, IL18RAP, ITGB2, IL18R1, MAP4K2, GFI1, KLRD1, CX3CR1, STAT1, TP53, NLRP3, STAT3, STAT4, MX1, STAT5B, CEACAM1, IFNAR2"], ["GO:0001816", "BP", "Cytokine production", "3.84E − 27", "1.29E − 24", "1.14E − 23", "1.42E − 23", "34", "KLRK1, ATG5, JAK2, IFIH1, TRAF2, TRAF6, CD247, ABL1, IKBKE, BST2, LILRB2, TBX21, TLR2, LAG3, HRAS, C1QBP, CLEC7A, XBP1, GBP1, SOCS1, IRF5, CCL5, IRF7, CTNNB1, RUNX1, LCP2, IL18RAP, IL18R1, CX3CR1, STAT1, NLRP3, STAT3, STAT5B, CEACAM1"], ["GO:0034097", "BP", "Response to cytokine", "2.23E − 26", "6.90E − 24", "6.07E − 23", "8.28E − 23", "38", "JAK1, JAK2, IFIH1, TRAF2, TRAF6, HLA-A, IKBKE, BST2, TLR2, PSMB9, XBP1, GBP1, CCRL2, SOCS1, CCR1, IRF5, CCL5, IRF7, CCR5, CTNNB1, RUNX1, IKBKB, FYN, IFI35, IL18RAP, ITGB2, IL2RG, IL18R1, GFI1, CX3CR1, STAT1, TP53, STAT3, STAT4, MX1, STAT5B, CEACAM1, IFNAR2"], ["GO:0042110", "BP", "T cell activation", "1.68E − 25", "4.43E − 23", "3.90E − 22", "6.21E − 22", "28", "CCND3, KLRK1, ATG5, PDCD1, TRAF6, ZBTB16, ABL1, LILRB2, TBX21, LAG3, CLEC7A, XBP1, SOCS1, IKZF1, CCL5, CTNNB1, RUNX1, ITGAL, FYN, ITGB2, IL2RG, IL18R1, ZAP70, TP53, NLRP3, STAT3, STAT5B, CEACAM1"], ["GO:0045321", "BP", "Leukocyte activation", "6.65E − 23", "1.30E − 20", "1.14E − 19", "2.47E − 19", "36", "CCND3, KLRK1, ATG5, JAK2, PDCD1, TRAF6, IKZF3, ZBTB16, ABL1, BST2, LILRB2, TBX21, TLR2, LAG3, CLEC7A, XBP1, SOCS1, IKZF1, CCL5, CTNNB1, RUNX1, SLAMF7, LCP2, ITGAL, FYN, IL18RAP, ITGB2, IL2RG, IL18R1,ZAP70, CX3CR1,TP53, NLRP3, STAT3, STAT5B, CEACAM1"], ["GO:0001775", "BP", "Cell activation", "2.83E − 22", "5.00E − 20", "4.40E − 19", "1.05E − 18", "37", "CCND3, KLRK1, ATG5, JAK2, PDCD1, TRAF6, IKZF3, ZBTB16, ABL1, BST2, LILRB2, TBX21, TLR2, LAG3, CLEC7A, XBP1, SOCS1, IKZF1, CCL5, CTNNB1, RUNX1, SLAMF7, LCP2, ITGAL, FYN, IL18RAP, ITGB2, IL2RG, IL18R1, ZAP70, CX3CR1, TP53, NLRP3, STAT3, STAT5B, CEACAM1, GP1BB"], ["GO:0080134", "BP", "Regulation of response to stress", "3.88E − 18", "3.59E − 16", "3.16E − 15", "1.44E − 14", "34", "KLRK1, JAK1, JAK2, IFIH1, TRAF2, TRAF6, ABL1, IKBKE, MAP4K1, TLR2, LAG3, HRAS, PSMB9, C1QBP, CLEC7A, SERPING1, XBP1, SOCS1, CCL5, IRF7, CTNNB1, IKBKB, FYN, IL18RAP, ITGB2, MAP4K2, GFI1, CX3CR1, STAT1, TP53, NLRP3, STAT5B, CEACAM1, IFNAR2"], ["GO:0051094", "BP", "Positive regulation of developmental process", "1.52E − 15", "1.00E − 13", "8.79E − 13", "5.64E − 12", "31", "JAK1, JAK2, TRAF6, ZBTB16, ABL1, LILRB2, TBX21, TLR2, C1QBP, CLEC7A, XBP1, SOCS1, CCR1, IKZF1, CCL5, CTNNB1, RUNX1, IKBKB, FYN, ITGB2, IL2RG, ZAP70, GFI1, CX3CR1, STAT1, TP53, NLRP3, STAT3, STAT5B, SMAD5, CEACAM1"], ["GO:0098552", "CC", "Side of membrane", "1.17E − 11", "1.54E − 09", "9.47E − 09", "3.08E − 09", "18", "KLRK1, PDCD1, TRAF2, TRAF6, HLA-A, TLR2, LAG3, CCRL2, CCR1, CCR5, SLAMF7, IKBKB, ITGAL, FYN, ITGB2, IL2RG, KLRD1, CX3CR1"], ["GO:0043235", "CC", "Receptor complex", "3.20E − 10", "2.81E − 08", "1.73E − 07", "8.44E − 08", "15", "TRAF2, TRAF6, CD247, TLR2, IKBKB, LCP2, ITGAL, IL18RAP, ITGB2, IL2RG, IL18R1, KLRC1, ZAP70, KLRD1, CEACAM1"], ["GO:0009986", "CC", "Cell surface", "2.20E − 09", "9.68E − 08", "5.96E − 07", "5.81E − 07", "19", "KLRK1, PDCD1, HLA-A, BST2, LILRB2, TLR2, LAG3, C1QBP, CLEC7A, CCRL2, CCR1, CCR5, SLAMF7, ITGAL, ITGB2, IL2RG, KLRD1, CX3CR1, CEACAM1"], ["GO:0005887", "CC", "Integral component of plasma membrane", "2.88E − 07", "6.90E − 06", "4.25E − 05", "7.59E − 05", "21", "KLRK1, TRAF2, TRAF6, CD99, LILRB2, TLR2, CCRL2, CCR1, CCR5, LTB4R, IKBKB, ITGAL, IL18RAP, ITGB2, IL2RG, IL18R1, KLRC1, CX3CR1, CEACAM1, GP1BB, IFNAR2"], ["GO:0098805", "CC", "Whole membrane", "8.24E − 06", "1.55E − 04", "9.56E − 04", "2.18E − 03", "19", "ATG5, JAK2, TRAF2, TRAF6, HLA-A, IKBKE, BST2, LILRB2, TLR2, IRF7, LTB4R, CTNNB1, IKBKB, LCP2, ITGAL, FYN, ITGB2, ZAP70, CEACAM1"], ["GO:0044194", "CC", "cytolytic granule", "1.84E − 04", "2.70E − 03", "1.66E − 02", "4.87E − 02", "2", "GZMB, GNLY"], ["GO:0000790", "CC", "Nuclear chromatin", "9.72E − 04", "1.17E − 02", "7.18E − 02", "2.57E − 01", "16", "IKZF3, ZBTB16, TBX21, XBP1, IRF5, IKZF1, IRF7, CTNNB1, RUNX1, GFI1, STAT1, TP53, STAT3, STAT4, STAT5B, SMAD5"], ["GO:0090575", "CC", "RNA polymerase II transcription factor complex", "5.30E − 03", "4.21E − 02", "2.59E − 01", "1.00E + 00", "4", "CTNNB1, RUNX1, TP53, STAT3"], ["GO:0005667", "CC", "Transcription factor complex", "5.46E − 03", "4.21E − 02", "2.59E − 01", "1.00E + 00", "6", "IKZF1, CTNNB1, RUNX1, TP53, STAT3, SMAD5"], ["GO:0048471", "CC", "Perinuclear region of cytoplasm", "8.69E − 03", "4.78E − 02", "2.94E − 01", "1.00E + 00", "8", "TRAF6, ABL1, HRAS, CTNNB1, FYN, CX3CR1, STAT1, MX1"], ["GO:0019900", "MF", "Kinase binding", "6.20E − 10", "1.90E − 07", "1.27E − 06", "2.82E − 07", "19", "CCND3, KLRK1, JAK2, TRAF2, TRAF6, CD247, ABL1, C1QBP, XBP1, SOCS1, CCL5, CTNNB1, IKBKB, ITGB2, MAP4K2, TP53, STAT3, CEACAM1, IFNAR2"], ["GO:0005102", "MF", "Signaling receptor binding", "7.06E − 08", "3.57E − 06", "2.39E − 05", "3.21E − 05", "23", "KLRK1, JAK1, JAK2, TRAF2, TRAF6, ABL1, HLA-A, LILRB2, TLR2, LAG3, C1QBP, CLEC7A, CCRL2, SOCS1, CCL5, CTNNB1, FYN, ITGB2, KLRD1, STAT1, TP53, STAT3, STAT5B"], ["GO:0044212", "MF", "Transcription regulatory region DNA binding", "1.45E − 07", "5.42E − 06", "3.63E − 05", "6.57E − 05", "17", "TRAF6, IKZF3, ZBTB16, TBX21, XBP1, IRF5, IKZF1, IRF7, CTNNB1, RUNX1, GFI1, STAT1, TP53, STAT3, STAT4, STAT5B, SMAD5"], ["GO:0038023", "MF", "Signaling receptor activity", "3.46E − 07", "1.13E − 05", "7.54E − 05", "1.58E − 04", "21", "KLRK1, CD247, LILRB2, TLR2, LAG3, CLEC7A, CCRL2, CCR1, CCL5, CCR5, LTB4R, ITGAL, IL18RAP, ITGB2, IL2RG, IL18R1, KLRC1, KLRD1, CX3CR1, GP1BB, IFNAR2"], ["GO:0043565", "MF", "Sequence-specific double-stranded DNA binding", "5.76E − 06", "9.35E − 05", "6.27E − 04", "2.62E − 03", "16", "IKZF3, ZBTB16, ABL1, TBX21, XBP1, IRF5, IKZF1, IRF7, RUNX1, STAT1, TP53, NLRP3, STAT3, STAT4, STAT5B, SMAD5"], ["GO:0016772", "MF", "Transferase activity, transferring phosphorus-containing groups", "8.11E − 06", "1.19E − 04", "7.98E − 04", "3.69E − 03", "20", "CCND3, JAK1, JAK2, TRAF2, TRAF6, ABL1, IKBKE, MAP4K1, HRAS, SOCS1, CCL5, CTNNB1, IKBKB, LCP2, FYN, ZAP70, MAP4K2, TP53, STAT3, CEACAM1"], ["GO:0070011", "MF", "Peptidase activity, acting on L-amino acid peptides", "1.03E − 05", "1.38E − 04", "9.27E − 04", "4.66E − 03", "16", "ATG5, JAK2, IFIH1, TRAF2, TRAF6, BST2, GZMB, PSMB9, CLEC7A, SERPING1, C2, FYN, STAT1, TP53, NLRP3, STAT3"], ["GO:0000977", "MF", "RNA polymerase II regulatory region sequence-specific DNA binding", "1.25E − 05", "1.58E − 04", "1.06E − 03", "5.67E − 03", "13", "IKZF3, ZBTB16, TBX21, XBP1, IKZF1, IRF7, RUNX1, STAT1, TP53, STAT3, STAT4, STAT5B, SMAD5"], ["GO:0035639", "MF", "Purine ribonucleoside triphosphate binding", "3.00E − 04", "1.75E − 03", "1.17E − 02", "1.37E − 01", "17", "JAK1, JAK2, IFIH1, ABL1, IKBKE, MAP4K1, HRAS, CUL9, GBP1, RUNX1, IKBKB, FYN, ZAP70, MAP4K2, TP53, NLRP3, MX1"], ["GO:0032559", "MF", "Adenylribonucleotide binding", "1.44E − 03", "6.51E − 03", "4.36E − 02", "6.57E − 01", "14", "JAK1, JAK2, IFIH1, ABL1, IKBKE, MAP4K1, CUL9, RUNX1, IKBKB, FYN, ZAP70, MAP4K2, TP53, NLRP3"]], "row_count": 31, "column_count": 9, "numeric_cells": 206, "header_rows": 1, "locator": "section[14]/table-wrap[1]#Tab4"}}, {"id": "asset:table:pmid:33251083:13", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:9ea3fe1ecbcc8d1365fe22b90c78b557792dba52572caca21621e8b502cab796", "bytes": 17310, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[14]/table-wrap[2]#Tab5", "version": null, "note": "The enriched GO terms of the down regulated differentially expressed genes", "structure": {"pmcid": "PMC7679428", "section_index": 14, "section_title": "Gene ontology (GO) enrichment analysis for DEGs", "row_count": 32, "column_count": 9}, "table": {"label": "Table 5", "caption": "The enriched GO terms of the down regulated differentially expressed genes", "rows": [["GO ID", "Category", "GO Name", "P Value", "FDR B&H", "FDR B&Y", "Bonferroni", "Gene Count", "Gene"], ["GO:0002682", "BP", "Regulation of immune system process", "1.87E − 103", "9.66E − 100", "8.82E − 99", "9.66E − 100", "153", "IL10, IL12A, IL12B, IL13, IRGM, MASP1, TRAF3, IL17A, CEBPB, CD244, HLA-B, HLA-C, IDO1, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, MAPKAPK2, HLA-DQB1, HLA-DRA, CTSC, HLA-DRB1, PECAM1, MBL2, TNFRSF14, GATA3, ETS1, PSMB10, CD55, PTPN22, CD46, BCL2, PTAFR, CD83, PTGER4, IL1RL2, CD209, PTK2, STAT5A, STAT6, TNFRSF4, CFD, PTPN6, SLAMF6, FCER1A, PIGR, FCGR2A, FCGR2B, CARD9, BTK, MIF, IL21, C1R, C1S, C4A, C4BPA, CCL7, CCR6, C6, C7, C8A, CCL19, C8B, CCL20, C9, CCL24, TAL1, XCL1, KIT, CX3CL1, KLRB1, CXCL12, VCAM1, SELE, GPI, RAG1, DPP4, ICOSLG, LILRA1, LILRA2, ZEB1, VTN, CLEC6A, ATG7, ICAM2, ICAM3, ICAM4, CXCL13, CASP3, AIRE, RELA, BTLA, RELB, GPR183, TLR9, LCK, CFI, CR2, IL23A, IFNA2, LGALS3, TFRC,IFNB1, IFNG, LIF, CD1A, CD3E, CSF1R, CSF2, CD8A, THY1, CD9, CSF3R, CD19, TIGIT, MS4A1, EBI3, CD22, IL20, CD80, CD86, ICAM5, TIRAP, CD34, CD40, IRAK4, CD44, CD48, TNFRSF13C, CD59, CD74, CD79A, CD79B, LTA, RORC, CTLA4, PAX5, HAMP, MAPK11, IL2, IL3, IL4, IL4R, IL5, CTSS, IL6, IL6R, IL7, IL27, MASP2, CXCR2"], ["GO:0019221", "BP", "Cytokine-mediated signaling pathway", "1.05E − 84", "1.35E − 81", "1.23E − 80", "5.40E − 81", "131", "IL10, IL10RA, IL12A, IL12B, IL13, IRGM, MASP1, TRAF3, IL17A, ILF3, CEBPB, CD244, HLA-B, AICDA, HLA-C, IDO1, TAGAP, HLA-DPA1, HLA-DPB1, HLA-DQA1, MAPKAPK2, HLA-DQB1, HLA-DRA, HLA-DRB1, MBL2, TNFRSF14, GATA3, PSMB10, CD55, PTPN22, CD46, BCL2, DEFB103B, PTAFR, PTGER4, IL1RL2, CCL26, CD209, STAT5A, BID, DEFB1, DEFB4A, CFD, PTPN6, SLAMF6, FCGR2B, CARD9, BTK, KLRF2, MIF, IL21, PLA2G2A, TOLLIP, C1R, C1S, C4A, C4BPA, CCL7, CCL11, CCL13, BATF3, CCL15, CCL16, C6, C7, CCL18, C8A, CCL19, C8B, CCL20, CCL22, C9, CCL24, CXCL11, XCL1, CX3CL1, NOS2, CXCL12, VCAM1, SELE, RAG2, LILRA2, CLEC6A, BCL2L11, ATG7, ITLN1, ICAM2, ICAM3, IRF8, CXCL13, CASP3, RELA, RELB, TLR9, PPBP, CFI, CR2, IL23A, IFNA2, EDNRB, LGALS3, IFNAR1, IFNB1, IFNG, CSF1R, CSF2, CD8A, CSF2RB, MS4A1, EGR1, SIGIRR, CD80, CD86, TIRAP, CD40, IRAK4, CD44, CD74, CD79B, LTA, HAMP, MAPK11, IL1RAP, IL2, IL4, IL4R, CTSS, IL6, IL6R, IL27, MASP2"], ["GO:0009607", "BP", "RESPONSE to biotic stimulus", "7.42E − 81", "7.65E − 78", "6.99E − 77", "3.83E − 77", "120", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, IRGM, IL16, TRAF3, TNFRSF9, IL17A, CEBPB, HLA-B, PDGFB, HLA-C, TNFSF12, SPP1, HLA-DPA1, HLA-DPB1, HLA-DQA1, MAPKAPK2, HLA-DQB1, HLA-DRA, HLA-DRB1, TNFRSF14, GATA3, ETS1, PSMB10, BCL2, PTAFR, IL1RL2, CCL26, IL17F,STAT5A, STAT6, TNFRSF4, PTPN6, IL22RA2, NFIL3, BTK, MIF, IL21, TOLLIP, CCL7, CCR6, CCL11, CCL13, CCR8, CCL15, MME, CCL16, CCL18, CCL19, CCL20, CCL22,CCL24, CXCL11, XCL1, KIT, CX3CL1, NOS2, CXCL12, VCAM1, IL19, SELE, SELPLG, CCR10, XCR1, TCF7, ZEB1, FN1, IRF8, CXCL13, CASP3, RELA, RELB, PPBP, IL23A, S1PR1, IFNA2, TFRC, IFNAR1, IFNB1, IFNG, LIF, CSF1R, CSF2, CSF2RB, CSF3R, EBI3, EGR1, SIGIRR, IL20, CD80, CD86, TIRAP, IL22, CD40, IRAK4, CD44, TNFRSF13C, CD74, LTA, RORC, HAMP, MAPK11, IL1RAP, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7, IL26, IL27, CXCR1, IL9, CXCR2"], ["GO:0009607", "BP", "Response to biotic stimulus", "7.42E − 81", "7.65E − 78", "6.99E − 77", "3.83E − 77", "131", "IL10, IL10RA, IL12A, IL12B, IL13, IRGM, MASP1, TRAF3, IL17A, ILF3, CEBPB, CD244, HLA-B, AICDA, HLA-C, IDO1, TAGAP, HLA-DPA1, HLA-DPB1, HLA-DQA1, MAPKAPK2, HLA-DQB1, HLA-DRA, HLA-DRB1, MBL2, TNFRSF14, GATA3, PSMB10, CD55, PTPN22, CD46, BCL2, DEFB103B, PTAFR, PTGER4, IL1RL2, CCL26, CD209, STAT5A, BID, DEFB1, DEFB4A, CFD, PTPN6, SLAMF6, FCGR2B, CARD9, BTK, KLRF2, MIF, IL21, PLA2G2A, TOLLIP, C1R, C1S, C4A, C4BPA, CCL7, CCL11, CCL13, BATF3, CCL15, CCL16, C6, C7, CCL18, C8A, CCL19, C8B, CCL20, CCL22, C9, CCL24, CXCL11, XCL1, CX3CL1, NOS2, CXCL12, VCAM1, SELE, RAG2, LILRA2, CLEC6A, BCL2L11, ATG7, ITLN1, ICAM2, ICAM3, IRF8, CXCL13, CASP3, RELA, RELB, TLR9, PPBP, CFI, CR2, IL23A, IFNA2, EDNRB, LGALS3, IFNAR1, IFNB1, IFNG, CSF1R, CSF2, CD8A, CSF2RB, MS4A1, EGR1, SIGIRR, CD80, CD86, TIRAP, CD40, IRAK4, CD44, CD74, CD79B, LTA, HAMP, MAPK11, IL1RAP, IL2, IL4, IL4R, CTSS, IL6, IL6R, IL27, MASP2"], ["GO:0034097", "BP", "Response to cytokine", "3.04E − 80", "2.61E − 77", "2.39E − 76", "1.57E − 76", "120", "IL10, IL10RA, IL12A, IL12B, IL13, IL13RA1, IRGM, IL16, TRAF3, TNFRSF9, IL17A, CEBPB, HLA-B, PDGFB, HLA-C, TNFSF12, SPP1, HLA-DPA1, HLA-DPB1, HLA-DQA1, MAPKAPK2, HLA-DQB1, HLA-DRA, HLA-DRB1, TNFRSF14, GATA3, ETS1, PSMB10, BCL2, PTAFR, IL1RL2, CCL26, IL17F, STAT5A, STAT6, TNFRSF4, PTPN6, IL22RA2, NFIL3, BTK, MIF, IL21, TOLLIP, CCL7, CCR6, CCL11, CCL13, CCR8, CCL15, MME, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, KIT, CX3CL1, NOS2, CXCL12, VCAM1, IL19, SELE, SELPLG, CCR10, XCR1, TCF7, ZEB1, FN1, IRF8, CXCL13, CASP3, RELA, RELB, PPBP, IL23A, S1PR1, IFNA2, TFRC, IFNAR1, IFNB1, IFNG, LIF, CSF1R, CSF2, CSF2RB, CSF3R, EBI3, EGR1, SIGIRR, IL20, CD80, CD86, TIRAP, IL22, CD40, IRAK4, CD44, TNFRSF13C, CD74, LTA, RORC, HAMP, MAPK11, IL1RAP, IL2, IL3, IL4, IL4R, IL5, IL6, IL6R, IL7, IL26, IL27, CXCR1, IL9, CXCR2"], ["GO:0042110", "BP", "T cell activation", "8.30E − 63", "2.25E − 60", "2.06E − 59", "4.28E − 59", "77", "IL10, IL12A, IL12B, CEBPB, CD244, IDO1, HLA-DMA, HLA-DMB, HLA-DPA1, HLA-DPB1, HLA-DQA1, TNFRSF14, GATA3, PSMB10, CD55, PTPN22, CD46, BCL2, CD83, PTGER4, IL1RL2, CD209, STAT5A, STAT6, TNFRSF4, EOMES, PTPN6, SLAMF6, FCGR2B, IL21, CCR6, CCL19, CCL20, XCL1, KIT, CXCL12, VCAM1, RAG1, RAG2, DPP4, ICOSLG, TCF7, ZEB1, CASP3, AIRE, BTLA, RELB, GPR183, LCK, IL23A, IFNA2, LGALS3, TFRC, IFNAR1, IFNB1, IFNG, CD3E, CD8A, THY1, TIGIT, EBI3, EGR1, CD80, CD86, CD44, CD48, TNFRSF13C, CD74, RORC, CTLA4, IL2, IL4, IL4R, IL6, IL6R, IL7, IL27"], ["GO:0001816", "BP", "Cytokine production", "8.07E − 58", "1.81E − 55", "1.65E − 54", "4.16E − 54", "87", "IL10, IL12A, IL12B, IL13, TRAF3, TNFRSF9, IL17A, CEBPB, CD244, IDO1, HLA-DPA1, HLA-DPB1, MAPKAPK2, IL17B, MBP, TNFRSF14, GATA3, CD55, PTPN22, CD46, PTAFR, CD83, PTGER4, IL1RL2, IL17F, STAT5A, STAT6, TNFRSF4, EOMES, PTPN6, SLAMF6, FCER1A, FCGR2B, CARD9, BTK, KLRF2, MIF, IL21, CCL19, CCL20, XCL1, KIT, CX3CL1, NOS2, IL19, ICOSLG, LILRA2, CLEC6A, FN1, IRF8, AIRE, RELA, RELB, TLR9, IL23A, IFNA2, IFNAR1, IFNB1, IFNG, CD3E, CSF1R, CSF2, TIGIT, EBI3, EGR1,SIGIRR, CD80, CD86, TIRAP, CD34, CD40, IRAK4, TNFRSF13C, CD74,LTA, RORC, MAPK11, IL1RAP, IL2, IL4, IL4R, IL6, IL6R, IL7, IL26, IL27, IL9"], ["GO:0002694", "BP", "Regulation of leukocyte activation", "7.07E − 57", "1.52E − 54", "1.39E − 53", "3.65E − 53", "77", "IL10, IL12A, IL12B, IL13, CEBPB, CD244, IDO1, HLA-DMA, HLA-DMB, HLA-DPA1, HLA-DPB1, HLA-DQA1, CTSC, TNFRSF14, GATA3, CD55, PTPN22, CD46, BCL2, PTAFR, CD83, IL1RL2, CD209, STAT5A, STAT6, TNFRSF4, PTPN6, FCER1A, FCGR2B, BTK, MIF, IL21, CCR6, CCL19, CCL20, XCL1, CX3CL1, VCAM1, RAG1, DPP4, ICOSLG, ZEB1, CASP3, BTLA, GPR183, TLR9, LCK, IL23A, IFNA2, LGALS3, TFRC, IFNB1, IFNG, CD3E, THY1, CD19, TIGIT, EBI3, CD22, CD80, CD86, TIRAP, CD40, CD44, TNFRSF13C, CD74, RORC, CTLA4, HAMP, IL2, IL4, IL4R, IL5, IL6, IL6R, IL7, IL27"], ["GO:0006954", "BP", "Inflammatory response", "5.64E − 55", "1.12E − 52", "1.02E − 51", "2.91E − 51", "82", "IL10, IL12B, IL13, IRGM, IL17A, CEBPB, IDO1, SPP1, MAPKAPK2, CTSC, IL17B, MBL2, GATA3, ETS1, PTAFR, PLA2G2E, PTGER4, IL1RL2, CCL26, IL17F, STAT5A, TNFRSF4, IL22RA2, FCER1A, FCGR2B, BTK,MIF, IL21, PLA2G2A, TOLLIP, C4A, CCL7, CCR6,CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, KIT, CX3CL1, NOS2, VCAM1, SELE, XCR1, FN1, NT5E, CXCL13, RELA, RELB, TLR9, PPBP, IL23A, IFNA2, EDNRB, IFNG, CSF1R, SIGIRR, IL20, TIRAP, IL22, CD40, CD44, LTA, HAMP, IL1RAP, IL2, CDH5, IL4, IL4R, IL5, CTSS, IL6, IL6R, IL27, IL9, CXCR2"], ["GO:0007155", "BP", "Cell adhesion", "3.87E − 42", "3.50E − 40", "3.20E − 39", "2.00E − 38", "91", "IL10, IL12A, IL12B, CEBPB,CD244, IDO1, HLA-DMA, HLA-DMB, SPP1, HLA-DPA1, HLA-DPB1, HLA-DQA1, PECAM1, MBP, TNFRSF14, GATA3, ETS1, CD55, PTPN22, CD46, BCL2, PTAFR, CD83, ITGAE, PTGER4, IL1RL2, CD209, PTK2, STAT5A, PTPN6, FCGR2B, IL21, PLAU, CCL11, CCR8, CCL19, XCL1, KIT, MAP4K4, CX3CL1, CXCL12, VCAM1, SELE, SELPLG, RAG1, DPP4, ICOSLG, VTN, FN1, BCL2L11, NT5E, ICAM2, ICAM3, ICAM4, CXCL13, CASP3, RELA, BTLA, LCK, IL23A, S1PR1, IFNA2, LGALS3, TFRC, IFNB1, IFNG, TGFBI, ARHGDIB, CD3E, THY1, CD9, CSF3R, TIGIT, EBI3, CD22, CD80, CD86, ICAM5, CD34, CD44, TNFRSF13C, CD74, CTLA4,IL1RAP, IL2, CDH5, IL4, IL4R, IL6, IL6R, IL7"], ["GO:0009986", "CC", "Cell surface", "8.40E − 48", "1.04E − 45", "6.72E − 45", "3.09E − 45", "83", "IL12A, IL12B, IL13, IL13RA1, TNFRSF9, IL17A, CD244, HLA-B, PDGFB, HLA-C, HLA-DMA, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DRA, HLA-DRB1, PECAM1, MBL2, MBP, TNFRSF14, CD55, CD46, TNFRSF10C, CD83, ITGAE, CD209, TNFRSF4, FCER1A, FCGR2B, FCGRT, MIF, PLAU, CCR6, CCR8, MME, KIT, CX3CL1, CXCL12, VCAM1, CCR10, DPP4, ICOSLG, XCR1, NT5E, BTLA, CR2, S1PR1, LGALS3, TFRC, IFNG, TGFBR1, CD1A, CD3E, CSF1R, CD8A, THY1, CD9, CSF3R, CD19, TIGIT, MS4A1, EBI3, CD22, CD80, CD86, CD34, CD40, CD44, CD48, TNFRSF13C, CD59, CD74, CD79A, CD79B, RORC, CTLA4, CDH5, IL4, CTSS, IL6, IL6R, CXCR1, CXCR2"], ["GO:0097478", "CC", "Leaflet of membrane bilayer", "8.80E − 48", "1.04E − 45", "6.72E − 45", "3.24E − 45", "70", "IL12B, IL13, IL13RA1, TRAF3, TNFRSF9, IL17A, CD244, HLA-B, HLA-C, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, HLA-DRB1, PECAM1, TNFRSF14, PTPN22, CD83, ITGAE, CD209, TNFRSF4, FCER1A, FCGR2B, FCGRT, CCR6, CCR8, KIT, CXCL12, VCAM1, CCR10, ICOSLG, XCR1, BTLA, LCK, CR2, S1PR1, LGALS3, TFRC, IFNG, CD1A, CD3E, BCAP31, CD8A, THY1, CD9, CSF3R, CD19, MS4A1, EBI3, CD22, CD80, CD86, CD34,CD40, CD44, CD48, TNFRSF13C, CD59,CD74, CD79A, CD79B, RORC, CTLA4, CDH5, IL4, IL6, IL6R, CXCR1, CXCR2"], ["GO:0031226", "CC", "Intrinsic component of plasma membrane", "4.10E − 24", "3.01E − 22", "1.96E − 21", "1.51E − 21", "75", "IL13RA1, TRAF3, TNFRSF9,TNFSF12, HLA-DPA1, HLA-DQA1, HLA-DRA, CD46,PTAFR, CD83, ITGAE, IL1RL2, TNFRSF4, CD82, SLAMF6,FCAR, FCER1A, PIGR, FCGR2B, KLRF2, TOLLIP, CCR6, CCR8, MME, C6, C7, C8A, C8B, C9, KIT, VCAM1, SELE, SELPLG, CCR10, ICOSLG, XCR1, LILRA2, ICAM2, ICAM3, ICAM4, BTLA, GPR183, S1PR1, SLC2A1, EDNRB, TFRC, IFNAR1, TGFBR1,CD1A, CD3E, BCAP31, CSF1R, CD8A, THY1, CSF2RB, CD9, CSF3R, CD19, MS4A1, EBI3, CD22, ICAM5, CD34, CD40, CD44, CD48, CD59, CD74, CD79B, CTLA4, IL1RAP, IL4R, IL6, IL6R, CXCR2"], ["GO:0098589", "CC", "Membrane region", "7.35E − 11", "1.93E − 09", "1.25E − 08", "2.70E − 08", "24", "PECAM1, CD55, CD46, STAT6, FCER1A, BTK, MME, SELE, SELPLG, DPP4, ITLN1, CASP3, LCK, S1PR1, SLC2A1, EDNRB, TGFBR1, CD1A, CD8A, THY1, CD19, MS4A1, CD48, CD79A"], ["GO:0043235", "CC", "Receptor complex", "3.10E − 10", "6.71E − 09", "4.35E − 08", "1.14E − 07", "26", "IL12B, IL13RA1, TRAF3, ITGAE, PTPN6, PIGR, TOLLIP, KIT, ITLN1, CR2, TFRC, TGFBR1, CD3E, CSF1R, CD8A, CSF2RB, CSF3R, EBI3, CD40, CD44, CD74, CD79A, CD79B, IL4R, IL6, IL6R"], ["GO:0030141", "CC", "Secretory granule", "3.67E − 07", "5.20E − 06", "3.37E − 05", "1.35E − 04", "29", "PDGFB, CTSC, PECAM1, CD55, CD46, PTAFR, CFD, PTPN6, FCAR, PIGR, FCGR2A, MIF, PLA2G2A, TOLLIP, PLAU, MME, KIT, GPI, LILRA3, FN1, ATG7, PPBP, LGALS3, CD9, CD44, CD59, CTSS, CXCR1, CXCR2"], ["GO:0005764", "CC", "Lysosome", "1.31E − 06", "1.49E − 05", "9.69E − 05", "4.81E − 04", "25", "IL13, HLA-DMA, HLA-DMB, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, CTSC, HLA-DRB1, FCER1A, PIGR, BTK, TOLLIP,KIT, DPP4, TLR9, IFNAR1, CD34, CD74, IL4, IL4R, CTSS, CXCR2"], ["GO:0005794", "CC", "Golgi apparatus", "4.18E − 03", "2.00E − 02", "1.30E − 01", "1.00E + 00", "31", "IRGM, HLA-B, PDGFB, HLA-C,SPP1, HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRA, CTSC, HLA-DRB1, CD55, CD46, DEFB103B, DEFB1,DEFB4A, MME, VCAM1, DPP4, VTN, TLR9, SLC2A1, TGFBI, BCAP31, CD44, CD59, CD74, CD79B, B3GAT1, CTLA4"], ["GO:0048471", "CC", "Perinuclear region of cytoplasm", "2.87E − 02", "8.46E − 02", "5.49E − 01", "1.00E + 00", "16", "TNFSF12, SPP1, PTPN22, BCL2, BTK, PLA2G2A, TOLLIP, CX3CL1, NOS2, SELE, ATG7,TFRC, TRAF4, BCAP31, CD34, CTLA4"], ["GO:0044297", "CC", "Cell body", "9.03E − 02", "2.08E − 01", "1.00E + 00", "1.00E + 00", "14", "PDGFB, MBP, PTGER4, FCGR2B, C4A, MME, CX3CL1, CASP3,IFNG, CD3E, THY1, CD22, CD40, IL6R"], ["GO:0030054", "CC", "Cell junction", "9.70E − 02", "2.20E − 01", "1.00E + 00", "1.00E + 00", "21", "PECAM1, CD46, PTK2, PTPN6, C4A, PLAU, MME, KIT, MAP4K4, DPP4, LCK, SLC2A1, TGFBR1, TRAF4, CD3E, THY1, CD9, CD44,CD59, HAMP, CDH5"], ["GO:0005126", "MF", "Cytokine receptor binding", "8.37E − 54", "6.01E − 51", "4.30E − 50", "6.01E − 51", "59", "IL10, IL12A, IL12B, IL13, TRAF3, TNFSF12, GATA3, DEFB103B, CCL26, IL17F, BID, DEFB1, DEFB4A, MIF, IL21, TOLLIP, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, CXCL13, CASP3, TLR9, PPBP, IL23A, IFNA2, IFNB1, IFNG, TGFBR1, LIF, TRAF4, CSF2, EBI3, IL20, IL22,IRAK4, CD44, LTA, IL1RAP, IL2,IL3, CDH5,IL4, IL5, IL6, IL6R, IL7, IL27, IL9"], ["GO:0005102", "MF", "Signaling receptor binding", "3.78E − 49", "9.05E − 47", "6.48E − 46", "2.72E − 46", "108", "IL10, IL12A, IL12B, IL13, IL16, TRAF3, IL17A, CEBPB, CD244, HLA-B, PDGFB, HLA-C, TNFSF12, HLA-DOB, SPP1, HLA-DPA1, HLA-DQA1, HLA-DQB1, HLA-DRA, IL17B, MBL2, GATA3, DEFB103B, CCL26, IL17F, PTK2, BID, DEFB1, DEFB4A, PTPN6, PIGR, MIF, IL21, TOLLIP, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, VCAM1, IL19, SELPLG, GPI, DPP4, ICOSLG, VTN, FN1, ATG7, ICAM2, ICAM3, ICAM4, CXCL13, CASP3, TLR9, LCK, PPBP, IL23A, S1PR1, IFNA2, EDNRB, LGALS3, IFNB1, IFNG, TGFBI, TGFBR1, LIF, TRAF4, CD3E,BCAP31, CSF2, CD8A, THY1, CD9, TIGIT, MS4A1, EBI3, CD22, IL20, CD86, ICAM5, TIRAP, IL22, IRAK4, CD44, CD74, LTA, HAMP, IL1RAP, IL2, IL3, CDH5, IL4, IL5, IL6, IL6R, IL7, IL26, IL27, IL9"], ["GO:0030545", "MF", "Chemokine receptor binding", "2.63E − 22", "2.36E − 20", "1.69E − 19", "1.89E − 19", "20", "DEFB103B, CCL26, DEFB1, DEFB4A, CCL7, CCL11,CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, CXCL13, PPBP"], ["GO:0098772", "MF", "Molecular function regulator", "1.42E − 18", "6.80E − 17", "4.86E − 16", "1.02E − 15", "71", "IL10, IL12A, IL12B, IL13, IRGM, IL16, IL17A, PDGFB, TNFSF12, SPP1, TAGAP, CTSC, IL17B, CD46, BCL2, DEFB103B, CCL26, IL17F, EOMES, DEFB4A, MIF, IL21, C4A, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, NOS2, CXCL12, IL19, GPI, FN1, CXCL13, CASP3, SKI, PPBP, IL23A, IFNA2, LGALS3, IFNB1, IFNG, LIF, ARHGDIB, TRAF4, CSF2, THY1, EBI3, IL20, TIRAP, IL22, LTA, HAMP, IL2, IL3, IL4, IL5, IL6, IL6R, IL7, IL26,IL27, IL9"], ["GO:0004888", "MF", "Transmembranesignaling receptor activity", "2.09E − 12", "8.81E − 11", "6.31E − 10", "1.50E − 09", "50", "IL10RA, IL12B, IL13RA1, HLA-DOB, HLA-DPA1, HLA-DQA1, HLA-DQB1, HLA-DRA, TNFRSF14, TNFRSF10C, PTAFR, PTGER4, IL1RL2, TNFRSF4, PTPN6, IL22RA2, FCER1A, PIGR, FCGR2B, CCR6, CCR8, KIT, KLRB1, LILRB5, SELE, CCR10, XCR1, LILRA1, GPR183, TLR9, CR2, S1PR1, EDNRB, IFNAR1, IFNG, TGFBR1, CD3E, CSF1R, CSF2RB, CSF3R, EBI3, CD44, CD74, CD79A, CD79B, IL1RAP, IL4R, IL6R, CXCR1, CXCR2"], ["GO:0001664", "MF", "G protein-coupled receptor binding", "3.80E − 12", "1.52E − 10", "1.08E − 09", "2.73E − 09", "23", "DEFB103B, CCL26, DEFB1, DEFB4A, CCL7, CCL11, CCL13, CCL15, CCL16, CCL18, CCL19, CCL20, CCL22, CCL24, CXCL11, XCL1, CX3CL1, CXCL12, CXCL13, PPBP, S1PR1, EDNRB, IL2"], ["GO:0044877", "MF", "Protein-containing complex binding", "1.24E − 11", "4.46E − 10", "3.19E − 09", "8.92E − 09", "48", "PDGFB, HLA-DMA, HLA-DMB, HLA-DOB, SPP1, HLA-DRA, HLA-DRB1, PTK2, FCAR, FCER1A, PIGR, FCGR2A, FCGR2B, FCGRT, MIF, C8A, C8B, CX3CL1, CXCL12, VCAM1, DPP4, LILRA2, VTN, FN1, BCL2L11, ICAM2, ICAM3, ICAM4, CASP3, RELA, LCK, IFNA2, LGALS3, IFNB1, TGFBI, TGFBR1, CD3E, BCAP31, CD8A, THY1, CD9, MS4A1, CD22, ICAM5, CD44, CD74, CDH5, CTSS"], ["GO:0042802", "MF", "IDENTICAL protein binding", "1.81E − 07", "3.93E − 06", "2.81E − 05", "1.30E − 04", "51", "IL12B, MASP1, CEBPB, AICDA, PDGFB, CTSC, PECAM1, ETS1, BCL2, IL17F, PTK2, STAT6, DEFB1, CARD9, BTK, KLRF2, MIF, C1S, MME, XCL1, KIT, NOS2, RAG1, DPP4, ICOSLG, TCF4, IKZF2, VTN, FN1, ATG7, ITLN1, AIRE, RELA, RELB, TLR9, LCK, CR2, SLC2A1, LGALS3, TFRC, TRAF4, CD3E, CSF1R, CD8A, TIGIT, TIRAP, CD74, CD79A, CD79B, CDH5, IL6R"], ["GO:0046983", "MF", "Protein dimerization activity", "6.79E − 07", "1.19E − 05", "8.51E − 05", "4.88E − 04", "42", "IL10, IL12A, IL12B, MASP1, CEBPB, PDGFB, HLA-DQA1, PECAM1, GATA3, BCL2, IL17F, BID, CARD9, KLRF2, CCL11, MME, TAL1, XCL1, KIT, NOS2, RAG1, DPP4, TCF4, IKZF2, BCL2L11, ATG7, CXCL13, RELA, TLR9, CR2, LGALS3, TFRC, TGFBR1, TRAF4, CD3E, CSF1R, CD8A, TIRAP, CD79A, CD79B, CDH5, IL6R"], ["GO:0016301", "MF", "Kinase activity", "1.16E − 05", "1.54E − 04", "1.10E − 03", "8.29E − 03", "40", "IL12B, IRGM, PDGFB, MAPKAPK2, PTPN22, PTK2, TNFRSF4, PTPN6, FCER1A, BTK, MIF, CCL19, TAL1, KIT, MAP4K4, NOS2, GPI, DUSP4, CASP3, TLR9, LCK, IL23A, IFNG, TGFBR1, TRAF4, CSF1R, THY1, CD19, EGR1, TIRAP, CD40, IRAK4, CD44, CD74, MAPK11, IL2, IL3, IL4, IL6, IL6R"]], "row_count": 32, "column_count": 9, "numeric_cells": 217, "header_rows": 1, "locator": "section[14]/table-wrap[2]#Tab5"}}, {"id": "asset:table:pmid:33251083:14", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:72eaeba363b965fe7e952d91d5d134b882754beaa91740a8a3be9d2804db13fb", "bytes": 16979, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[15]/table-wrap[1]#Tab6", "version": null, "note": "Topology table for up and down regulated genes", "structure": {"pmcid": "PMC7679428", "section_index": 15, "section_title": "PPI network construction and module analysis", "row_count": 277, "column_count": 7}, "table": {"label": "Table 6", "caption": "Topology table for up and down regulated genes", "rows": [["Regulation", "Node", "Degree", "Betweenness", "Stress", "Closeness", "Clustering Coefficient"], ["Up", "TP53", "682", "0.308256", "69419762", "0.44613", "0.001042"], ["Up", "HRAS", "543", "0.243425", "36147274", "0.454702", "0.003568"], ["Up", "CTNNB1", "454", "0.17049", "60805652", "0.403018", "0.002042"], ["Up", "FYN", "396", "0.117564", "12570856", "0.436236", "0.010907"], ["Up", "ABL1", "362", "0.118179", "7631538", "0.470883", "0.015228"], ["Up", "JAK2", "258", "0.054758", "7164820", "0.434802", "0.021748"], ["Up", "STAT3", "253", "0.05294", "16470742", "0.398767", "0.02108"], ["Up", "JAK1", "223", "0.032981", "6336566", "0.40235", "0.019876"], ["Up", "TRAF6", "216", "0.074546", "12176648", "0.395301", "0.010207"], ["Up", "STAT1", "213", "0.045072", "12845532", "0.387307", "0.023031"], ["Up", "TRAF2", "171", "0.047572", "11238720", "0.357837", "0.007981"], ["Up", "ZAP70", "153", "0.018814", "3346658", "0.375226", "0.028294"], ["Up", "IKBKB", "140", "0.040639", "5153454", "0.403521", "0.017575"], ["Up", "MX1", "125", "0.057134", "6475242", "0.352549", "0.002194"], ["Up", "STAT5B", "118", "0.012758", "2934924", "0.377415", "0.057801"], ["Up", "ZBTB16", "105", "0.029011", "4339392", "0.371064", "0.00696"], ["Up", "GP1BB", "104", "0.024662", "2308816", "0.350596", "0.009335"], ["Up", "RUNX1", "95", "0.021204", "3579930", "0.370309", "0.010526"], ["Up", "C1QBP", "89", "0.043687", "7011558", "0.334675", "0"], ["Up", "TLR2", "85", "0.019615", "2401022", "0.374839", "0.034734"], ["Up", "SOCS1", "85", "0.019595", "1846156", "0.398713", "0.072829"], ["Up", "SMAD5", "82", "0.024208", "4462604", "0.336687", "0.003011"], ["Up", "ITGB2", "72", "0.025976", "3349086", "0.351061", "0.008607"], ["Up", "IKZF1", "72", "0.011714", "1722502", "0.373157", "0.034038"], ["Up", "CCND3", "71", "0.025956", "2361424", "0.357661", "0.008048"], ["Up", "ATG5", "60", "0.020131", "2294688", "0.333219", "0.00678"], ["Up", "IFIH1", "59", "0.023459", "2059722", "0.333945", "0.001753"], ["Up", "STAT4", "58", "0.002561", "797810", "0.366902", "0.082275"], ["Up", "PSMB9", "55", "0.0248", "2740768", "0.310739", "0"], ["Up", "IKZF3", "47", "0.005026", "756292", "0.361346", "0.053654"], ["Up", "GFI1", "46", "0.007563", "811180", "0.357266", "0.013527"], ["Up", "IRF7", "44", "0.010411", "1198488", "0.338804", "0.008457"], ["Up", "MAP4K1", "44", "0.006432", "851692", "0.348957", "0.046512"], ["Up", "CD247", "43", "0.00724", "710792", "0.349292", "0.058693"], ["Up", "LCP2", "41", "0.003353", "442356", "0.338331", "0.07439"], ["Up", "CCR5", "39", "0.010719", "942222", "0.343359", "0.043185"], ["Up", "IRF5", "34", "0.006222", "736764", "0.339277", "0.012478"], ["Up", "GZMB", "29", "0.01009", "1297184", "0.313584", "0"], ["Up", "IL2RG", "27", "0.005284", "347620", "0.3463", "0.071225"], ["Up", "TBX21", "23", "0.003781", "493896", "0.328704", "0.023715"], ["Up", "XBP1", "21", "0.004344", "440004", "0.329933", "0"], ["Up", "HLA-A", "19", "0.007447", "822622", "0.311637", "0"], ["Up", "MAP4K2", "18", "0.002038", "190802", "0.334636", "0.045752"], ["Up", "CCR1", "18", "0.004542", "722956", "0.323912", "0.019608"], ["Up", "IFNAR2", "17", "0.003686", "214358", "0.335872", "0.169118"], ["Up", "ITGAL", "17", "0.004258", "302784", "0.285588", "0.058824"], ["Up", "ATG10", "16", "0.00303", "204222", "0.278618", "0.075"], ["Up", "CEACAM1", "15", "0.003567", "815206", "0.308991", "0"], ["Up", "CLEC7A", "13", "0.006223", "422114", "0.302253", "0"], ["Up", "CUL9", "10", "0.001917", "66468", "0.352806", "0.111111"], ["Up", "SERPING1", "10", "0.004857", "805696", "0.203225", "0"], ["Up", "NLRP3", "10", "0.002325", "208526", "0.304371", "0"], ["Up", "LTB4R", "9", "0.002812", "970594", "0.242059", "0"], ["Up", "GBP1", "9", "0.001571", "66852", "0.307489", "0"], ["Up", "LILRB2", "9", "0.004803", "191694", "0.287677", "0"], ["Up", "CD99", "8", "0.002792", "99752", "0.324129", "0"], ["Up", "KLRK1", "7", "0.003445", "544176", "0.26256", "0"], ["Up", "BST2", "7", "1.93E − 04", "36836", "0.324273", "0"], ["Up", "KLRD1", "7", "0.001389", "97132", "0.22517", "0.047619"], ["Up", "KLRC1", "5", "0.003221", "307724", "0.286234", "0.1"], ["Up", "IL18R1", "4", "0.00118", "348338", "0.245924", "0"], ["Up", "PDCD1", "4", "0.001374", "55018", "0.303894", "0.166667"], ["Up", "SLAMF7", "4", "0.00206", "191070", "0.233272", "0"], ["Up", "C2", "4", "0.001446", "96444", "0.245447", "0"], ["Up", "IFI35", "3", "6.93E − 04", "23710", "0.323301", "0"], ["Up", "LAG3", "2", "4.23E − 06", "1074", "0.245695", "0"], ["Up", "IL18RAP", "2", "1.95E − 04", "52194", "0.233609", "0"], ["Down", "MAPK11", "421", 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"FN1", "116", "0.052141", "5201654", "0.335331", "0.003148"], ["Down", "TCF4", "115", "0.044569", "5794596", "0.333586", "0.005492"], ["Down", "TRAF3", "113", "0.038869", "4088284", "0.341886", "0.010588"], ["Down", "STAT6", "102", "0.026319", "3212830", "0.363486", "0.039216"], ["Down", "GATA3", "97", "0.03064", "3006348", "0.350689", "0.018471"], ["Down", "IRAK4", "90", "0.015953", "2526624", "0.344064", "0.010986"], ["Down", "TCF7", "90", "0.029254", "4190222", "0.323796", "9.99E − 04"], ["Down", "ATG7", "88", "0.032475", "4557368", "0.323761", "0"], ["Down", "PSMB10", "86", "0.037084", "3948650", "0.316536", "0"], ["Down", "EGR2", "78", "0.014472", "2942228", "0.323966", "0.002331"], ["Down", "CEBPB", "77", "0.01563", "2080316", "0.347208", "0.028708"], ["Down", "TLR9", "75", "0.01613", "2504516", "0.335623", "0.017658"], ["Down", "ETS1", "74", "0.015119", "2229504", "0.345493", "0.023695"], ["Down", "MBP", "69", "0.02034", "1946892", "0.33211", "0.008099"], ["Down", "CD40", "63", "0.012367", "1565636", "0.343144", "0.030722"], ["Down", "PTPN22", "63", "0.005103", "648768", "0.333009", "0.039939"], ["Down", "CXCL13", "62", "0.033409", "4616616", "0.255924", "0.002644"], ["Down", "CD44", "61", "0.027234", "2621678", "0.352941", "0.016393"], ["Down", "DUSP4", "56", "0.005964", "877004", "0.343106", "0.046753"], ["Down", "TOLLIP", "55", "0.020841", "1681614", "0.32948", "0.011448"], ["Down", "TRAF4", "54", "0.017367", "1322968", "0.327447", "0.012579"], ["Down", "TFRC", "51", "0.020865", "2030850", "0.323932", "7.84E − 04"], ["Down", "TAL1", "49", "0.012074", "1294452", "0.327273", "0.02551"], ["Down", "BATF3", "48", "0.009925", "1237560", "0.309471", "0.011525"], ["Down", "SKI", "47", "0.009912", "1441494", "0.325026", "0.010176"], ["Down", "MAP4K4", "46", "0.00723", "923942", "0.334966", "0.025121"], ["Down", "ARHGDIB", "43", "0.008007", "998356", "0.325267", "0.00443"], ["Down", "BID", "40", "0.007734", "665116", "0.336026", "0.046154"], ["Down", "BCL2L11", "39", "0.006742", "718322", "0.327935", "0.032389"], ["Down", "NOS2", "39", "0.012743", "915032", "0.332218", "0.010796"], ["Down", "AICDA", "38", "0.016444", "2864544", "0.288094", "0"], ["Down", "GPI", "37", "0.009895", "1400722", "0.322202", "0"], ["Down", "CSF2RB", "37", "0.005071", "681430", "0.345571", "0.100601"], ["Down", "TIRAP", "37", "0.009595", "1070880", "0.324", "0.033033"], ["Down", "CD9", "36", "0.01001", "838100", "0.302685", "0.019048"], ["Down", "CDH5", "35", "0.00845", "737334", "0.306177", "0.013445"], ["Down", "AIRE", "35", "0.010893", "2140272", "0.292753", "0"], ["Down", "CD82", "32", "0.008605", "911074", "0.323659", "0.020161"], ["Down", "IFNAR1", "31", "0.006943", "536824", "0.340902", "0.062366"], ["Down", "CD3E", "30", "0.006779", "602042", "0.338614", "0.078161"], ["Down", "LGALS3", "30", "0.009645", "633882", "0.302536", "0"], ["Down", "VTN", "30", "0.009755", "750034", "0.299445", "0.006897"], ["Down", "CD8A", "29", "0.008368", "709958", "0.334638", "0.029557"], ["Down", "CSF3R", "28", "0.008229", "711320", "0.334093", "0.029101"], ["Down", "EOMES", "28", "0.005201", "513270", "0.277597", "0.018519"], ["Down", "VCAM1", "28", "0.008841", "718322", "0.31732", "0.010582"], ["Down", "ZEB1", "27", "0.006122", "1257304", "0.288851", "0"], ["Down", "MME", "27", "0.009061", "1835908", "0.290624", "0.014245"], ["Down", "MIF", "27", "0.00826", "611016", "0.321596", "0.005698"], ["Down", "IKZF2", "26", "0.003358", "390862", "0.3129", "0"], ["Down", "MAPKAPK2", "26", "0.004801", "451358", "0.310909", "0.024615"], ["Down", "PLAU", "25", "0.008975", "593824", "0.317844", "0.01"], ["Down", "DPP4", "25", "0.010538", "1418468", "0.265231", "0.006667"], ["Down", "RORC", "25", "0.00722", "1661398", "0.278729", "0.013333"], ["Down", "CD55", "24", "0.010279", "705586", "0.303102", "0"], ["Down", "IL4R", "24", "0.00238", "270352", "0.331181", "0.083333"], ["Down", "CD19", "23", "0.001702", "211728", "0.304301", "0.090909"], ["Down", "IRF8", "23", "0.005195", "372574", "0.329904", "0.019763"], ["Down", "IL4", "23", "0.004905", "441962", "0.296246", "0.019763"], ["Down", "RELB", "23", "0.003464", "286340", "0.326336", "0.055336"], ["Down", "PAX5", "22", "0.002896", "300204", "0.291726", "0.021645"], ["Down", "CXCR2", "22", "0.006344", "1097670", "0.26098", "0.047619"], ["Down", "IL16", "22", "0.008141", "455702", "0.300821", "0"], ["Down", "SPP1", "21", "0.005095", "320668", "0.307124", "0.014286"], ["Down", "THY1", "21", "0.008614", "468640", "0.309285", "0.004762"], ["Down", "SLC2A1", "20", "0.00547", "544898", "0.316244", "0"], ["Down", "EDNRB", "20", "0.006473", "488214", "0.313729", "0"], ["Down", "SELE", "20", "0.005852", "411150", "0.300615", "0.031579"], ["Down", "HLA-DRA", "18", "0.004735", "398954", "0.319992", "0.052288"], ["Down", "CD79A", "18", "0.00478", "297512", "0.338726", "0.176471"], ["Down", "HLA-B", "17", "0.006176", "428434", "0.315111", "0.022059"], ["Down", "BCAP31", "17", "0.005172", "568664", "0.289476", "0.058824"], ["Down", "IL1RAP", "17", "0.003059", "257852", "0.322101", "0.088235"], ["Down", "PDGFB", "16", "0.003308", "533330", "0.27399", "0"], ["Down", "S1PR1", "16", "0.002256", "404754", "0.320025", "0"], ["Down", "CD46", "15", "0.004006", "360234", "0.31814", "0.047619"], ["Down", "RAG1", "15", "0.002698", "229148", "0.267304", "0.019048"], ["Down", "CD22", "15", "0.003395", "414458", "0.289123", "0.07619"], ["Down", "POU2F2", "14", "0.00252", "256428", "0.313506", "0"], ["Down", "TNFRSF14", "14", "0.002863", "205148", "0.290131", "0.054945"], ["Down", "FCGR2B", "14", "0.001419", "233096", "0.299854", "0.087912"], ["Down", "CSF2", "14", "0.001964", "189924", "0.271764", "0.076923"], ["Down", "SELPLG", "14", "0.004641", "618406", "0.266933", "0.010989"], ["Down", "IL10", "13", "0.001286", "131502", "0.275387", "0.025641"], ["Down", "CCL7", "13", "0.002891", "346838", "0.240789", "0"], ["Down", "CD79B", "13", "3.06E − 04", "78608", "0.337796", "0.423077"], ["Down", "HLA-C", "13", "0.003625", "407006", "0.310407", "0.025641"], ["Down", "IL6R", "13", "0.004275", "289876", "0.288689", "0.051282"], ["Down", "IL17A", "13", "0.002334", "388710", "0.280328", "0.025641"], ["Down", "FCGR2A", "13", "0.002143", "252800", "0.318403", "0"], ["Down", "LTA", "12", "0.002886", "476206", "0.257315", "0"], ["Down", "CXCL12", "12", "0.005496", "372448", "0.27655", "0.030303"], ["Down", "CTSS", "12", "0.00407", "451030", "0.260472", "0"], ["Down", "CD59", "12", "0.004363", "207460", "0.290405", "0.030303"], ["Down", "CXCR1", "12", "8.07E − 04", "176404", "0.242095", "0.166667"], ["Down", "IL2", "12", "0.002493", "217616", "0.290487", "0.030303"], ["Down", "C6", "12", "9.26E − 04", "133246", "0.24911", "0"], ["Down", "CD74", "12", "0.003192", "267306", "0.315369", "0.121212"], ["Down", "CR2", "11", "0.001319", "143504", "0.267072", "0.036364"], ["Down", "CCR10", "11", "0.003702", "303034", "0.222963", "0.072727"], ["Down", "CTSC", "11", "0.004925", "257558", "0.302268", "0"], ["Down", "TGFBI", "10", "7.77E − 04", "51700", "0.253167", "0.155556"], ["Down", "CD209", "10", "4.47E − 04", "37928", "0.243628", "0.044444"], ["Down", "NT5E", "10", "0.003249", "169846", "0.314627", "0.022222"], ["Down", "IL10RA", "10", "0.001722", "123836", "0.32116", "0.155556"], ["Down", "MBL2", "9", "0.002733", "247190", "0.248106", "0.027778"], ["Down", "TNFRSF9", "9", "0.001065", "77604", "0.309005", "0.305556"], ["Down", "HLA-DQA1", "9", "8.50E − 04", "84902", "0.306147", "0.194444"], ["Down", "NFIL3", "9", "0.002148", "269802", "0.253063", "0"], ["Down", "MS4A1", "9", "6.53E − 04", "54246", "0.308664", "0.083333"], ["Down", "PTAFR", "9", "0.001839", "146258", "0.315401", "0.055556"], ["Down", "MASP1", "9", "0.002137", "326806", "0.225528", "0.083333"], ["Down", "PLA2G2A", "8", "0.002039", "625578", "0.228338", "0"], ["Down", "TNFRSF4", "8", "7.20E − 04", "87330", "0.26198", "0.321429"], ["Down", "IL13RA1", "8", "6.92E − 04", "54632", "0.3129", "0.214286"], ["Down", "CD48", 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05", "5052", "0.242936", "0"], ["Down", "FCGRT", "4", "0.001307", "236680", "0.210779", "0"], ["Down", "CCL22", "4", "5.04E − 04", "43848", "0.247169", "0"], ["Down", "IL12B", "4", "1.64E − 04", "39054", "0.194859", "0.5"], ["Down", "IL27", "3", "2.87E − 04", "26194", "0.215697", "0.333333"], ["Down", "IL22", "3", "6.54E − 04", "37474", "0.199417", "0"], ["Down", "C7", "3", "1.54E − 04", "29126", "0.226657", "0"], ["Down", "TIGIT", "3", "0.001299", "79710", "0.18742", "0"], ["Down", "DEFB4A", "3", "0.002265", "309432", "0.250917", "0"], ["Down", "IL22RA2", "3", "8.49E − 04", "82918", "0.216806", "0"], ["Down", "IL21", "3", "2.06E − 05", "882", "0.21301", "0"], ["Down", "C9", "3", "1.97E − 05", "976", "0.229359", "0.333333"], ["Down", "LIF", "3", "1.35E − 05", "994", "0.252689", "0"], ["Down", "ITGAE", "3", "6.54E − 04", "122018", "0.226607", "0"], ["Down", "IL5", "3", "2.60E − 05", "1936", "0.26283", "0.333333"], ["Down", "HLA-DPB1", "2", "0", "0", "0.240356", "1"], ["Down", "CFI", 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"IL19", "1", "0", "0", "0.5", "0"]], "row_count": 277, "column_count": 7, "numeric_cells": 1443, "header_rows": 1, "locator": "section[15]/table-wrap[1]#Tab6"}}, {"id": "asset:table:pmid:33251083:15", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:9f3e4a1eac95f4caba623fab38d02663f148640b1982a308e2735b6d1ad0a952", "bytes": 10788, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[16]/table-wrap[1]#Tab7", "version": null, "note": "miRNA - target gene interaction table", "structure": {"pmcid": "PMC7679428", "section_index": 16, "section_title": "Construction of target gene–miRNA regulatory network", "row_count": 185, "column_count": 8}, "table": {"label": "Table 7", "caption": "miRNA - target gene interaction table", "rows": [["Regulation", "Target Genes", "Degree", "MicroRNA", "Regulation", "Target Genes", "Degree", "MicroRNA"], ["Up", "IKZF3", "134", "hsa-mir-6860", "Down", "SKI", "210", "hsa-mir-5100"], ["Up", "TP53", "130", "hsa-mir-5703", "Down", "TNFRSF13C", "136", "hsa-mir-3197"], ["Up", "IFNAR2", "109", "hsa-mir − 4510", "Down", "BCL2L11", "122", "hsa-mir-8064"], ["Up", "SMAD5", "83", "hsa-mir-6086", "Down", "ICOSLG", "119", "hsa-mir-3672"], ["Up", "STAT3", "80", "hsa-mir − 4270", "Down", "IL6R", "94", "hsa-mir-7641"], ["Up", "TRAF6", "71", "hsa-mir-6745", "Down", "VCAM1", "86", "hsa-mir − 4270"], ["Up", "RUNX1", "67", "hsa-mir − 4467", "Down", "LILRA2", "83", "hsa-mir − 4780"], ["Up", "ABL1", "64", "hsa-mir − 4511", "Down", "IRAK4", "78", "hsa-mir-520e"], ["Up", "KLRD1", "60", "hsa-mir-5094", "Down", "BTLA", "72", "hsa-mir-3133"], ["Up", "CCL5", "49", "hsa-mir − 4775", "Down", "CD55", "71", "hsa-mir-6124"], ["Up", "CTNNB1", "48", "hsa-mir − 4255", "Down", "CCL22", "71", "hsa-mir-5190"], ["Up", "MAP4K2", "47", "hsa-mir-6131", "Down", "CD44", "70", "hsa-mir-5696"], ["Up", "PSMB9", "44", "hsa-mir-3658", "Down", "PDGFB", "69", "hsa-mir-6132"], ["Up", "ZBTB16", "43", "hsa-mir − 4287", "Down", "BCL2", "68", "hsa-mir-184"], ["Up", "SOCS1", "42", "hsa-mir − 4495", "Down", "TFRC", "67", "hsa-mir-6070"], ["Up", "HLA-A", "39", "hsa-mir-6129", "Down", "PIGR", "66", "hsa-mir − 4486"], ["Up", "SERPING1", "38", "hsa-mir-1262", "Down", "CCL16", "63", "hsa-mir-7703"], ["Up", "CCR5", "33", "hsa-mir-3183", "Down", "IFNAR1", "61", "hsa-mir − 4430"], ["Up", "CLEC7A", "33", "hsa-mir − 4792", "Down", "TIRAP", "61", "hsa-mir − 4325"], ["Up", "CD99", "32", "hsa-mir-3199", "Down", "ETS1", "58", "hsa-mir-3972"], ["Up", "LILRB2", "30", "hsa-mir-3941", "Down", "CD59", "56", "hsa-mir-3919"], ["Up", "ATG10", "29", "hsa-mir − 4309", "Down", "IKZF2", "55", "hsa-mir-5096"], ["Up", "CCND3", "29", "hsa-mir-1321", "Down", "CEBPB", "54", "hsa-mir − 4510"], ["Up", "STAT5B", "25", "hsa-mir-8485", "Down", "CD209", "54", "hsa-mir-3188"], ["Up", "TRAF2", "21", "hsa-mir-6165", "Down", "HLA-C", "53", "hsa-mir − 4660"], ["Up", "HRAS", "21", 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