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pmid:33345284
A panel of two miRNAs correlated to systolic blood pressure is a good diagnostic indicator for stroke.
Yujun Qi · Mingfeng Yuan · Qiong Yi · Yan Wang · Lei Xu · Changsong Xu · Min Lu
Bioscience reports · 2021 doi:10.1042/BSR20203458
Paper
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Experiment
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Data
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Analysis
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Execution
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Complete file
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Differential analysis was applied to highlight hub differentially expressed miRNAs (DE-miRNAs), whereby we built a miRNA-based diagnostic indicator for stroke using bootstrap ranking Least Absolute Shrinkage and Selection Operator (LASSO) regression with 10-fold cross-validation. The classification value of the indicator was validated with receiver operating characteristic (ROC) analysis in both the training set and test set, as well as quantitative real-time PCR (qRT-PCR) for the feature miRNAs. Further, target genes of hub miRNAs and hub DE-miRNAs were retrieved for functional enrichment.\nRESULTS: A total of 447 hub miRNAs in the blue modules were significantly correlated with systolic blood pressure (r = 0.32, false discovery rate = 10-6). Target genes predicted with the hub miRNAs were mostly implicated in the Kyoto Encyclopedia of Genes and Genomes (KEGG) terms including mitogen-activated protein kinase (MAPK) pathway, senescence, and TGF-β signaling pathway. The diagnostic indicator with miR-4420 and miR-6793-5p showed remarkable performance in the training set (area under curve [AUC]= 0.953), as well as in the test set (AUC = 0.894). Results of qRT-PCR validated the diagnostic value of the two miRNAs embedded in the proposed indicator.\nCONCLUSIONS: We developed a panel of two miRNAs, which is a good diagnostic indicator for stroke. These results require further investigation.", "claims": [{"id": "claim-method", "statement": "Using miRNA profiles from the Gene Expression Omnibus (GEO) database, we identified miRNAs correlated to SBP via Weighted Gene Co-expression Network Analysis (WGCNA) [18,19], and built a diagnostic indicator with two miRNAs by integrated analysis.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:33345284", "locator": "sections[1] \"Introduction\" paragraph 4", "quote": "Using miRNA profiles from the Gene Expression Omnibus (GEO) database, we identified miRNAs correlated to SBP via Weighted Gene Co-expression Network Analysis (WGCNA) [18,19], and built a diagnostic indicator with two miRNAs by integrated analysis."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The miRNA expression profile was downloaded from the GEO database (https://www.ncbi.nlm.nih.gov/geo/) with the accession number GSE117064.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:33345284", "locator": "sections[15] \"Data Availability\" paragraph 2", "quote": "The miRNA expression profile was downloaded from the GEO database (https://www.ncbi.nlm.nih.gov/geo/) with the accession number GSE117064."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": null, "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:33345284"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE117064"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE117064"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:33345284", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1042/BSR20203458", "sha256": 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"GSM3268768", "GSM3268769", "GSM3268770", "GSM3268771", "GSM3268772", "GSM3268773", "GSM3268774", "GSM3268775", "GSM3268776", "GSM3268777", "GSM3268778", "GSM3268779", "GSM3268780", "GSM3268781", "GSM3268782", "GSM3268783", "GSM3268784", "GSM3268785", "GSM3268786", "GSM3268787", "GSM3268788", "GSM3268789", "GSM3268790", "GSM3268791", "GSM3268792", "GSM3268793", "GSM3268794", "GSM3268795", "GSM3268796", "GSM3268797", "GSM3268798", "GSM3268799", "GSM3268800", "GSM3268801", "GSM3268802", "GSM3268803", "GSM3268804", "GSM3268805", "GSM3268806", "GSM3268807", "GSM3268808", "GSM3268809", "GSM3268810", "GSM3268811", "GSM3268812", "GSM3268813", "GSM3268814", "GSM3268815", "GSM3268816", "GSM3268817", "GSM3268818", "GSM3268819", "GSM3268820", "GSM3268821", "GSM3268822", "GSM3268823", "GSM3268824", "GSM3268825", "GSM3268826", "GSM3268827", "GSM3268828", "GSM3268829", "GSM3268830", "GSM3268831", "GSM3268832", "GSM3268833", "GSM3268834", "GSM3268835", "GSM3268836", "GSM3268837", "GSM3268838", "GSM3268839", "GSM3268840", "GSM3268841", "GSM3268842", "GSM3268843", "GSM3268844", "GSM3268845", "GSM3268846", "GSM3268847", "GSM3268848", "GSM3268849", "GSM3268850", "GSM3268851", "GSM3268852", "GSM3268853", "GSM3268854", "GSM3268855", "GSM3268856", "GSM3268857", "GSM3268858", "GSM3268859", "GSM3268860", "GSM3268861", "GSM3268862", "GSM3268863", "GSM3268864", "GSM3268865", "GSM3268866", "GSM3268867", "GSM3268868", "GSM3268869", "GSM3268870", "GSM3268871", "GSM3268872", "GSM3268873", "GSM3268874", "GSM3268875", "GSM3268876", "GSM3268877", "GSM3268878", "GSM3268879", "GSM3268880", "GSM3268881", "GSM3268882", "GSM3268883", "GSM3268884", "GSM3268885", "GSM3268886", "GSM3268887", "GSM3268888", "GSM3268889", "GSM3268890", "GSM3268891", "GSM3268892", "GSM3268893", "GSM3268894", "GSM3268895", "GSM3268896", "GSM3268897", "GSM3268898", "GSM3268899", "GSM3268900", "GSM3268901", "GSM3268902", "GSM3268903", "GSM3268904", "GSM3268905", "GSM3268906", "GSM3268907", "GSM3268908", "GSM3268909", "GSM3268910", "GSM3268911", "GSM3268912", "GSM3268913", "GSM3268914", "GSM3268915", "GSM3268916", "GSM3268917", "GSM3268918", "GSM3268919", "GSM3268920", "GSM3268921", "GSM3268922", "GSM3268923", "GSM3268924", "GSM3268925", "GSM3268926", "GSM3268927", "GSM3268928", "GSM3268929", "GSM3268930", "GSM3268931", "GSM3268932", "GSM3268933", "GSM3268934", "GSM3268935", "GSM3268936", "GSM3268937", "GSM3268938", "GSM3268939", "GSM3268940", "GSM3268941", "GSM3268942", "GSM3268943", "GSM3268944", "GSM3268945", "GSM3268946", "GSM3268947", "GSM3268948", "GSM3268949", "GSM3268950", "GSM3268951", "GSM3268952", "GSM3268953", "GSM3268954", "GSM3268955", "GSM3268956", "GSM3268957", "GSM3268958", "GSM3268959", "GSM3268960", "GSM3268961", "GSM3268962", "GSM3268963", "GSM3268964", "GSM3268965", "GSM3268966", "GSM3268967", "GSM3268968", "GSM3268969", "GSM3268970", "GSM3268971", "GSM3268972", "GSM3268973", "GSM3268974", "GSM3268975", "GSM3268976", "GSM3268977", "GSM3268978", "GSM3268979", "GSM3268980", "GSM3268981", "GSM3268982", "GSM3268983", "GSM3268984", "GSM3268985", "GSM3268986", "GSM3268987", "GSM3268988", "GSM3268989", "GSM3268990", "GSM3268991", "GSM3268992", "GSM3268993", "GSM3268994", "GSM3268995", "GSM3268996", "GSM3268997", "GSM3268998", "GSM3268999", "GSM3269000", "GSM3269001", "GSM3269002", "GSM3269003", "GSM3269004", "GSM3269005", "GSM3269006", "GSM3269007", "GSM3269008", "GSM3269009", "GSM3269010", "GSM3269011", "GSM3269012", "GSM3269013", "GSM3269014", "GSM3269015", "GSM3269016", "GSM3269017", "GSM3269018", "GSM3269019", "GSM3269020", "GSM3269021", "GSM3269022", "GSM3269023", "GSM3269024", "GSM3269025", "GSM3269026", "GSM3269027", "GSM3269028", "GSM3269029", "GSM3269030", "GSM3269031", "GSM3269032", "GSM3269033", "GSM3269034", "GSM3269035", "GSM3269036", "GSM3269037", "GSM3269038", "GSM3269039", "GSM3269040", "GSM3269041", "GSM3269042", "GSM3269043", "GSM3269044", "GSM3269045", "GSM3269046", "GSM3269047", "GSM3269048", "GSM3269049", "GSM3269050", "GSM3269051", "GSM3269052", "GSM3269053", "GSM3269054", "GSM3269055", "GSM3269056", "GSM3269057", "GSM3269058", "GSM3269059", "GSM3269060", "GSM3269061", "GSM3269062", "GSM3269063", "GSM3269064", "GSM3269065", "GSM3269066", "GSM3269067", "GSM3269068", "GSM3269069", "GSM3269070", "GSM3269071", "GSM3269072", "GSM3269073", "GSM3269074", "GSM3269075", "GSM3269076", "GSM3269077", "GSM3269078", "GSM3269079", "GSM3269080", "GSM3269081", "GSM3269082", "GSM3269083", "GSM3269084", "GSM3269085", "GSM3269086", "GSM3269087", "GSM3269088", "GSM3269089", "GSM3269090", "GSM3269091", "GSM3269092", "GSM3269093", "GSM3269094", "GSM3269095", "GSM3269096", "GSM3269097", "GSM3269098", "GSM3269099", "GSM3269100", "GSM3269101", "GSM3269102", "GSM3269103", "GSM3269104", "GSM3269105", "GSM3269106", "GSM3269107", "GSM3269108", "GSM3269109", "GSM3269110", "GSM3269111", "GSM3269112", "GSM3269113", "GSM3269114", "GSM3269115", "GSM3269116", "GSM3269117", "GSM3269118", "GSM3269119", "GSM3269120", "GSM3269121", "GSM3269122", "GSM3269123", "GSM3269124", "GSM3269125", "GSM3269126", "GSM3269127", "GSM3269128", "GSM3269129", "GSM3269130", "GSM3269131", "GSM3269132", "GSM3269133", "GSM3269134", "GSM3269135", "GSM3269136", "GSM3269137", "GSM3269138", "GSM3269139", "GSM3269140", "GSM3269141", "GSM3269142", "GSM3269143", "GSM3269144", "GSM3269145", "GSM3269146", "GSM3269147", "GSM3269148", "GSM3269149", "GSM3269150", "GSM3269151", "GSM3269152", "GSM3269153", "GSM3269154", "GSM3269155", "GSM3269156", "GSM3269157", "GSM3269158", "GSM3269159", "GSM3269160", "GSM3269161", "GSM3269162", "GSM3269163", "GSM3269164", "GSM3269165", "GSM3269166", "GSM3269167", "GSM3269168", "GSM3269169", "GSM3269170", "GSM3269171", "GSM3269172", "GSM3269173", "GSM3269174", "GSM3269175", "GSM3269176", "GSM3269177", "GSM3269178", "GSM3269179", "GSM3269180", "GSM3269181", "GSM3269182", "GSM3269183", "GSM3269184", "GSM3269185", "GSM3269186", "GSM3269187", "GSM3269188", "GSM3269189", "GSM3269190", "GSM3269191", "GSM3269192", "GSM3269193", "GSM3269194", "GSM3269195", "GSM3269196", "GSM3269197", "GSM3269198", "GSM3269199", "GSM3269200", "GSM3269201", "GSM3269202", "GSM3269203", "GSM3269204", "GSM3269205", "GSM3269206", "GSM3269207", "GSM3269208", "GSM3269209", "GSM3269210", "GSM3269211", "GSM3269212", "GSM3269213", "GSM3269214", "GSM3269215", "GSM3269216", "GSM3269217", "GSM3269218", "GSM3269219", "GSM3269220", "GSM3269221", "GSM3269222", "GSM3269223", "GSM3269224", "GSM3269225", "GSM3269226", "GSM3269227", "GSM3269228", "GSM3269229", "GSM3269230", "GSM3269231", "GSM3269232", "GSM3269233", "GSM3269234", "GSM3269235", "GSM3269236", "GSM3269237", "GSM3269238", "GSM3269239", "GSM3269240", "GSM3269241", "GSM3269242", "GSM3269243", "GSM3269244", "GSM3269245", "GSM3269246", "GSM3269247", "GSM3269248", "GSM3269249", "GSM3269250", "GSM3269251", "GSM3269252", "GSM3269253", "GSM3269254", "GSM3269255", "GSM3269256", "GSM3269257", "GSM3269258", "GSM3269259", "GSM3269260", "GSM3269261", "GSM3269262", "GSM3269263", "GSM3269264", "GSM3269265", "GSM3269266", "GSM3269267", "GSM3269268", "GSM3269269", "GSM3269270", "GSM3269271", "GSM3269272", "GSM3269273", "GSM3269274", "GSM3269275", "GSM3269276", "GSM3269277", "GSM3269278", "GSM3269279", "GSM3269280", "GSM3269281", "GSM3269282", "GSM3269283", "GSM3269284", "GSM3269285", "GSM3269286", "GSM3269287", "GSM3269288", "GSM3269289", "GSM3269290", "GSM3269291", "GSM3269292", "GSM3269293", "GSM3269294", "GSM3269295", "GSM3269296", "GSM3269297", "GSM3269298", "GSM3269299", "GSM3269300", "GSM3269301", "GSM3269302", "GSM3269303", "GSM3269304", "GSM3269305", "GSM3269306", "GSM3269307", "GSM3269308", "GSM3269309", "GSM3269310", "GSM3269311", "GSM3269312", "GSM3269313", "GSM3269314", "GSM3269315", "GSM3269316", "GSM3269317", "GSM3269318", "GSM3269319", "GSM3269320", "GSM3269321", "GSM3269322", "GSM3269323", "GSM3269324", "GSM3269325", "GSM3269326", "GSM3269327", "GSM3269328", "GSM3269329", "GSM3269330", "GSM3269331", "GSM3269332", "GSM3269333", "GSM3269334", "GSM3269335", "GSM3269336", "GSM3269337", "GSM3269338", "GSM3269339", "GSM3269340", "GSM3269341", "GSM3269342", "GSM3269343", "GSM3269344", "GSM3269345", "GSM3269346", "GSM3269347", "GSM3269348", "GSM3269349", "GSM3269350", "GSM3269351", "GSM3269352", "GSM3269353", "GSM3269354", "GSM3269355", "GSM3269356", "GSM3269357", "GSM3269358", "GSM3269359", "GSM3269360", "GSM3269361", "GSM3269362", "GSM3269363", "GSM3269364", "GSM3269365", "GSM3269366", "GSM3269367", "GSM3269368", "GSM3269369", "GSM3269370", "GSM3269371", "GSM3269372", "GSM3269373", "GSM3269374", "GSM3269375", "GSM3269376", "GSM3269377", "GSM3269378", "GSM3269379", "GSM3269380", "GSM3269381", "GSM3269382", "GSM3269383", "GSM3269384", "GSM3269385", "GSM3269386", "GSM3269387", "GSM3269388", "GSM3269389", "GSM3269390", "GSM3269391", "GSM3269392", "GSM3269393", "GSM3269394", "GSM3269395", "GSM3269396", "GSM3269397", "GSM3269398", "GSM3269399", "GSM3269400", "GSM3269401", "GSM3269402", "GSM3269403", "GSM3269404", "GSM3269405", "GSM3269406", "GSM3269407", "GSM3269408", "GSM3269409", "GSM3269410", "GSM3269411", "GSM3269412", "GSM3269413", "GSM3269414", "GSM3269415", "GSM3269416", "GSM3269417", "GSM3269418", "GSM3269419", "GSM3269420", "GSM3269421", "GSM3269422", "GSM3269423", "GSM3269424", "GSM3269425", "GSM3269426", "GSM3269427", "GSM3269428", "GSM3269429", "GSM3269430", "GSM3269431", "GSM3269432", "GSM3269433", "GSM3269434", "GSM3269435", "GSM3269436", "GSM3269437", "GSM3269438", "GSM3269439", "GSM3269440", "GSM3269441", "GSM3269442", "GSM3269443", "GSM3269444", "GSM3269445", "GSM3269446", "GSM3269447", "GSM3269448", "GSM3269449", "GSM3269450", "GSM3269451", "GSM3269452", "GSM3269453", "GSM3269454", "GSM3269455", "GSM3269456", "GSM3269457", "GSM3269458", "GSM3269459", "GSM3269460", "GSM3269461", "GSM3269462", "GSM3269463", "GSM3269464", "GSM3269465", "GSM3269466", "GSM3269467", "GSM3269468", "GSM3269469", "GSM3269470", "GSM3269471", "GSM3269472", "GSM3269473", "GSM3269474", "GSM3269475", "GSM3269476", "GSM3269477", "GSM3269478", "GSM3269479", "GSM3269480", "GSM3269481", "GSM3269482", "GSM3269483", "GSM3269484", "GSM3269485", "GSM3269486", "GSM3269487", "GSM3269488", "GSM3269489", "GSM3269490", "GSM3269491", "GSM3269492", "GSM3269493", "GSM3269494", "GSM3269495", "GSM3269496", "GSM3269497", "GSM3269498", "GSM3269499", "GSM3269500", "GSM3269501", "GSM3269502", "GSM3269503", "GSM3269504", "GSM3269505", "GSM3269506", "GSM3269507", "GSM3269508", "GSM3269509", "GSM3269510", "GSM3269511", "GSM3269512", "GSM3269513", "GSM3269514", "GSM3269515", "GSM3269516", "GSM3269517", "GSM3269518", "GSM3269519", "GSM3269520", "GSM3269521", "GSM3269522", "GSM3269523", "GSM3269524", "GSM3269525", "GSM3269526", "GSM3269527", "GSM3269528", "GSM3269529", "GSM3269530", "GSM3269531", "GSM3269532", "GSM3269533", "GSM3269534", "GSM3269535", "GSM3269536", "GSM3269537", "GSM3269538", "GSM3269539", "GSM3269540", "GSM3269541", "GSM3269542", "GSM3269543", "GSM3269544", "GSM3269545", "GSM3269546", "GSM3269547", "GSM3269548", "GSM3269549", "GSM3269550", "GSM3269551", "GSM3269552", "GSM3269553", "GSM3269554", "GSM3269555", "GSM3269556", "GSM3269557", "GSM3269558", "GSM3269559", "GSM3269560", "GSM3269561", "GSM3269562", "GSM3269563", "GSM3269564", "GSM3269565", "GSM3269566", "GSM3269567", "GSM3269568", "GSM3269569", "GSM3269570", "GSM3269571", "GSM3269572", "GSM3269573", "GSM3269574", "GSM3269575", "GSM3269576", "GSM3269577", "GSM3269578", "GSM3269579", "GSM3269580", "GSM3269581", "GSM3269582", "GSM3269583", "GSM3269584", "GSM3269585", "GSM3269586", "GSM3269587", "GSM3269588", "GSM3269589", "GSM3269590", "GSM3269591", "GSM3269592", "GSM3269593", "GSM3269594", "GSM3269595", "GSM3269596", "GSM3269597", "GSM3269598", "GSM3269599", "GSM3269600", "GSM3269601", "GSM3269602", "GSM3269603", "GSM3269604", "GSM3269605", "GSM3269606", "GSM3269607", "GSM3269608", "GSM3269609", "GSM3269610", "GSM3269611", "GSM3269612", "GSM3269613", "GSM3269614", "GSM3269615", "GSM3269616", "GSM3269617", "GSM3269618", "GSM3269619", 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