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pmid:33624385

Discovery and validation of novel biomarkers for detection of cervical cancer.

Zigang Li · Jianhua Chen · Shaobo Zhao · Yajun Li · Jie Zhou · Jianghong Liang · Huifang Tang

Cancer medicine · 2021 doi:10.1002/cam4.3799

Paper

complete

Experiment

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Data

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Analysis

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Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
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pmid:33624385
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paper object · 10 fields
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title
Discovery and validation of novel biomarkers for detection of cervical cancer.
doi
10.1002/cam4.3799
pmid
33624385
authors array · 7 items
[0]
Zigang Li
[1]
Jianhua Chen
[2]
Shaobo Zhao
[3]
Yajun Li
[4]
Jie Zhou
[5]
Jianghong Liang
[6]
Huifang Tang
journal
Cancer medicine
year
2021
abstract
AIMS: To investigate novel biomarker for diagnosis of cervical cancer, we analyzed the datasets in Gene Expression Omnibus (GEO) and confirmed the candidate biomarker in patient sample. MATERIALS AND METHODS: We collected major datasets of cervical cancer in GEO, and analyzed the differential expression of normal and cancer samples online with GEO2R and tested the differences, then focus on the GSE63514 to screen the target genes in different histological grades by using the R-Bioconductor package and R-heatmap. Then human specimens from the cervix in different histological grades were used to confirm the top 8 genes expression by immunohistochemical staining using Ki67 as a standard control. RESULTS: We identified genes differentially expressed in normal and cervical cancer, 274 upregulated genes and 206 downregulated genes. After intersection with GSE63514, we found the obvious tendency in different histological grades. Then we screened the top 24 genes, and confirmed the top 8 genes in human cervix tissues. Immunohistochemical (IHC) results confirmed that keratin 17 (KRT17) was not expressed in normal cervical tissues and was over-expressed in cervical cancer. Cysteine-rich secretory protein-2 (CRISP2) was less expressed in high-grade squamous intraepithelial lesions (HSILs) than in other histological grades. CONCLUSION: For the good repeatability and consistency of KRT17 and CRISP2, they may be good candidate biomarkers. Combined analysis of KRT17, CRISP2 expression at both genetic and protein levels can determine different histological grades of cervical squamous cell carcinoma. Such combined analysis is capable of improving diagnostic accuracy of cervical cancer.
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The t‐test was performed for statistical analysis of variance.
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The datasets used and analyzed during the current study are available from the corresponding author upon reasonable request.
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Gene expression analysis of cervical cancer progression
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Cervical cancer in GEO datasets (updated by July 6, 2019)
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The frequency of immunohistochemical staining reactivity of top gene in cervical intraepithelial neoplasm and cervical carcinoma
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The frequency of immunohistochemical staining reactivity of top gene in cervical intraepithelial neoplasm and cervical carcinoma
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sed to confirm the top 8 genes expression by immunohistochemical staining using Ki67 as a standard control. R
[1]
med the top 8 genes in human cervix tissues. Immunohistochemical (IHC) results confirmed that keratin 17 (KRT
[2]
n human cervix tissues. Immunohistochemical (IHC) results confirmed that keratin 17 (KRT17) w
[3]
ession by immunohistochemical staining using Ki67 as a standard control. RESULTS: We identifie
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Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:33624385", "kind": "science-record", "revision": 7, "content_hash": "sha256:3828ed55f9ffe967390e8b1f1ca9abd3004a991b7f5b7c6720c5dfb85bca1c03", "created_at": "2026-11-01T15:41:26Z", "updated_at": "2026-11-01T22:03:11Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Discovery and validation of novel biomarkers for detection of cervical cancer.", "doi": "10.1002/cam4.3799", "pmid": "33624385", "authors": ["Zigang Li", "Jianhua Chen", "Shaobo Zhao", "Yajun Li", "Jie Zhou", "Jianghong Liang", "Huifang Tang"], "journal": "Cancer medicine", "year": 2021, "abstract": "AIMS: To investigate novel biomarker for diagnosis of cervical cancer, we analyzed the datasets in Gene Expression Omnibus (GEO) and confirmed the candidate biomarker in patient sample.\nMATERIALS AND METHODS: We collected major datasets of cervical cancer in GEO, and analyzed the differential expression of normal and cancer samples online with GEO2R and tested the differences, then focus on the GSE63514 to screen the target genes in different histological grades by using the R-Bioconductor package and R-heatmap. Then human specimens from the cervix in different histological grades were used to confirm the top 8 genes expression by immunohistochemical staining using Ki67 as a standard control.\nRESULTS: We identified genes differentially expressed in normal and cervical cancer, 274 upregulated genes and 206 downregulated genes. After intersection with GSE63514, we found the obvious tendency in different histological grades. Then we screened the top 24 genes, and confirmed the top 8 genes in human cervix tissues. Immunohistochemical (IHC) results confirmed that keratin 17 (KRT17) was not expressed in normal cervical tissues and was over-expressed in cervical cancer. Cysteine-rich secretory protein-2 (CRISP2) was less expressed in high-grade squamous intraepithelial lesions (HSILs) than in other histological grades.\nCONCLUSION: For the good repeatability and consistency of KRT17 and CRISP2, they may be good candidate biomarkers. Combined analysis of KRT17, CRISP2 expression at both genetic and protein levels can determine different histological grades of cervical squamous cell carcinoma. 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This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE63514"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE63514"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:33624385", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1002/cam4.3799", "sha256": 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R", "med the top 8 genes in human cervix tissues. Immunohistochemical (IHC) results confirmed that keratin 17 (KRT", "n human cervix tissues. Immunohistochemical (IHC) results confirmed that keratin 17 (KRT17) w", "ession by immunohistochemical staining using Ki67 as a standard control. RESULTS: We identifie"], "order_basis": "paper_text_order:673", "id": "assay:1"}, {"role": "analysis", "definition_id": "group_comparison", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["group_summary", "welch_t", "bootstrap_mean_difference", "group_comparison_anova"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 0.8, "evidence": ["analysis of variance"], "order_basis": "consumes_earlier_output", "id": "assay:2"}]}