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pmid:33746583
Screening, identification and interaction analysis of key MicroRNAs and genes in Asthenozoospermia.
Liman Li · Song Chen
International journal of medical sciences · 2021 doi:10.7150/ijms.54460
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Experiment
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Complete file
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Our study aimed to confirm the key microRNAs (miRNAs) and genes in asthenozoospermia and demonstrate the underlying epigenetic regulatory mechanisms. Methods: We screened out and pooled previous studies to extracted potential differentially expressed miRNAs (DEMs). GSE22331 and a published profile dataset were integrated to identify differentially expressed genes (DEGs). Pathway and gene ontology analysis were performed using DAVID. A protein-protein network (PPI) was constructed using STRING. The target genes of DEMs were predicted using TargetScan and the miRNA-mRNA network was built. Results: We reported 3 DEMs and 423 DEGs by pooling included dataset and published studies. Pathway analysis showed that these DEGs might participate in signaling pathways regulating pluripotency of stem cells, Wnt signaling pathway and Notch signaling pathway. 25 hub genes were identified, and the most significant gene was BDNF. We screened out the overlapped DEGs between the predicted target genes of 3 DEMs and the 423 DEGs. Finally, a potential miRNA-mRNA regulatory network was constructed. Conclusion: This study firstly pooled several published studies and a GEO dataset to determine the significance of potential miRNAs and genes, such as miR-374b, miR-193a, miR-34b, BDNF, NTRK2, HNRNPD and EFTUD2 in regulating asthenozoospermia and underscore their interactions in the pathophysiological mechanism. Our results provided theoretical basis and new clues for potential therapeutic treatment in asthenozoospermia. 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the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC7976570", "source": "europe_pmc_fulltext", "coverage": "whole_body", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:GSE22331", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22331", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE22331", "version": null, "note": "Literature research results are available from the authors upon reasonable request.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Literature research results are available from the authors upon reasonable request.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM555952", "GSM555953"], "sample_count": 2, "group_sizes": null, "group_sizes_basis": null, "platform": "570", "taxon": "Homo sapiens", "title": "Expression data from ejaculated spermatozoa of normozoospermic and asthenozoospermic men", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "asset:table:pmid:33746583:1", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:533802b296418e2cdad57a0771ae0be5339d2f6715413e945bc9f3472989a2af", "bytes": 572, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[10]/table-wrap[1]#T1", "version": null, "note": "Information of 4 studies", "structure": {"pmcid": "PMC7976570", "section_index": 10, "section_title": "DEMs in asthenozoospermia", "row_count": 5, "column_count": 3}, "table": {"label": "Table 1", "caption": "Information of 4 studies", "rows": [["Study", "Samples", "Inclusion criteria of miRNAs"], ["Wang 2011", "A = a pool of 58 samples; 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