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pmid:33763352

High Expression of Hyaluronan-Mediated Motility Receptor Predicts Adverse Outcomes: A Potential Therapeutic Target for Head and Neck Squamous Cell Carcinoma.

Tianzhu Lu · Yahan Zheng · Xiaochang Gong · Qiaoli Lv · Junjun Chen · Ziwei Tu · Shaojun Lin · Jianji Pan · Qiaojuan Guo · Jingao Li

Frontiers in oncology · 2021 doi:10.3389/fonc.2021.608842

Paper

complete

Experiment

complete

Data

partial

Analysis

partial

Execution

absent

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Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
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pmid:33763352
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science-record
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https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json
created_at
2026-11-01T15:41:30Z
updated_at
2026-11-01T22:03:24Z
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paper object · 10 fields
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title
High Expression of Hyaluronan-Mediated Motility Receptor Predicts Adverse Outcomes: A Potential Therapeutic Target for Head and Neck Squamous Cell Carcinoma.
doi
10.3389/fonc.2021.608842
pmid
33763352
authors array · 10 items
[0]
Tianzhu Lu
[1]
Yahan Zheng
[2]
Xiaochang Gong
[3]
Qiaoli Lv
[4]
Junjun Chen
[5]
Ziwei Tu
[6]
Shaojun Lin
[7]
Jianji Pan
[8]
Qiaojuan Guo
[9]
Jingao Li
journal
Frontiers in oncology
year
2021
abstract
Background: Several studies have shown that the hyaluronan-mediated motility receptor (HMMR) is overexpressed in various cancers and could be a potential prognostic factor. However, further research is still required to determine the prognostic value and potential function of HMMR in head and neck squamous cell carcinoma (HNSCC). Materials and Methods: Transcriptomic expression data were collected from the Cancer Genome Atlas database (TCGA) and Gene Expression Omnibus and the differences in HMMR expression between normal and tumor tissues were analyzed. The correlation between the methylation level of HMMR and its mRNA expression was analyzed via cBioPortal. Additionally, the data obtained from TCGA was analyzed with MethSurv to determine the prognostic value of the HMMR methylation levels in HNSCC. Gene set enrichment analysis (GSEA) and single sample GSEA (ssGSEA) were used to explore the potential biological functions of HMMR. Results: HMMR was highly expressed in HNSCC tumor tissue compared to normal tissue (p < 0.001). Multivariate analysis (MAV) showed that high HMMR mRNA expression was an independent prognostic factor of overall survival (OS) in TCGA (HR = 1.628, 95% CI: 1.169-2.266, p = 0.004) and GSE41613 data (HR = 2.238, p = 0.013). The methylation level of HMMR negatively correlated with the HMMR expression (R = -0.12, p < 0.001), and patients with low HMMR methylation had worse OS than patients with high methylation (p < 0.001). GSEA found that HMMR expression was associated with the KARS, EMT, and G2M checkpoint pathways, as well as the interferon-gamma and interferon-alpha responses, whereas ssGSEA showed that HMMR expression positively correlated with the infiltration level of Th2 cells. MAV confirmed that high HMMR protein expression was an inferior independent factor for OS (HR = 2.288, p = 0.045) and progression-free survival (HR = 2.247, p = 0.038) in 70 HNSCC. Conclusions: This study demonstrated that the upregulation of HMMR mRNA and protein in HNSCC is a biomarker for poor prognosis. The biological functions of HMMR are potentially related to the KARS, EMT, and G2M checkpoint pathways, as well as the interferon-gamma and interferon-alpha responses. These findings help to elucidate the role of HMMR in carcinogenesis and lay a foundation for further study.
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The copy number variation (CNV) and methylation level data of HMMR were obtained through the cBioPortal web platform (https://www.cbioportal.org/) and a comparison of the varying HMMR gene expressions in HMMR copy number variation groups (Kruskal–Wallis test) and the correlation between HMMR methylation level and HMMR gene expression (Person correlation) was conducted.
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sections[8] "HMMR Methylation Level and Its Prognosis Analysis" paragraph 2
quote
The copy number variation (CNV) and methylation level data of HMMR were obtained through the cBioPortal web platform (https://www.cbioportal.org/) and a comparison of the varying HMMR gene expressions in HMMR copy number variation groups (Kruskal–Wallis test) and the correlation between HMMR methylation level and HMMR gene expression (Person correlation) was conducted.
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The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/Supplementary Material.
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The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/Supplementary Material.
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A 13-gene signature prognostic of HPV-negative OSCC: discovery and external validation
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Demographic and clinical characteristics of HNSCC patients with low- and high expression HMMR in TCGA (n = 500).
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PMC7982417
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HMMR Was Upregulated in HNSCC
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Table 1
caption
Demographic and clinical characteristics of HNSCC patients with low- and high expression HMMR in TCGA (n = 500).
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[0] array · 4 items
[0]
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[1]
Level
[2]
HMMR expression
[3]
p
[1] array · 5 items
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[1]
[2]
Low (n = 250)
[3]
High (n−250)
[4]
[2] array · 5 items
[0]
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[1]
Female
[2]
70 (28.0%)
[3]
63 (25.2%)
[4]
0.544
[3] array · 5 items
[0]
[1]
Male
[2]
180 (72.0%)
[3]
187 (74.8%)
[4]
[4] array · 5 items
[0]
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[1]
[2]
62.0 [54.3,69.0]
[3]
60.0 [53.0,68.0]
[4]
0.237
[5] array · 5 items
[0]
T stage
[1]
T1
[2]
16 (6.4%)
[3]
17 (6.8%)
[4]
0.241
[6] array · 5 items
[0]
[1]
T2
[2]
62 (24.8%)
[3]
81 (32.4%)
[4]
[7] array · 5 items
[0]
[1]
T3
[2]
66 (26.4%)
[3]
64 (25.6%)
[4]
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[0]
[1]
T4
[2]
98 (39.2%)
[3]
81 (32.4%)
[4]
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[0]
[1]
Missing
[2]
8 (3.2%)
[3]
7 (2.8%)
[4]
[10] array · 5 items
[0]
N stage
[1]
N0
[2]
126 (50.4%)
[3]
113 (45.2%)
[4]
<0.001
[11] array · 5 items
[0]
[1]
N1
[2]
50 (20.0%)
[3]
30 (12.0%)
[4]
[12] array · 5 items
[0]
[1]
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[2]
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[3]
90 (36.0%)
[4]
[13] array · 5 items
[0]
[1]
N3
[2]
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[3]
7 (2.8%)
[4]
[14] array · 5 items
[0]
[1]
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[2]
12 (4.8%)
[3]
10 (4%)
[4]
[15] array · 5 items
[0]
M stage
[1]
M0
[2]
233 (93.2%)
[3]
237 (94.8%)
[4]
0.684
[16] array · 5 items
[0]
[1]
M1
[2]
3 (1.2%)
[3]
2 (0.8%)
[4]
[17] array · 5 items
[0]
[1]
Missing
[2]
14 (5.6%)
[3]
11 (4.4%)
[4]
[18] array · 5 items
[0]
Clinical stage
[1]
Stage I
[2]
13 (5.2%)
[3]
6 (2.4%)
[4]
0.045
[19] array · 5 items
[0]
[1]
Stage II
[2]
41 (16.4%)
[3]
54 (21.6%)
[4]
[20] array · 5 items
[0]
[1]
Stage III
[2]
60 (24.0%)
[3]
42 (16.8%)
[4]
[21] array · 5 items
[0]
[1]
Stage IV
[2]
129 (516%)
[3]
141 (56.4%)
[4]
[22] array · 5 items
[0]
[1]
Missing
[2]
5 (2%)
[3]
7 (2.8%)
[4]
[23] array · 5 items
[0]
Histologic grade
[1]
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[2]
40 (16.3%)
[3]
21 (8.4%)
[4]
0.035
[24] array · 5 items
[0]
[1]
G2
[2]
157 (64.1%)
[3]
142 (56.8%)
[4]
[25] array · 5 items
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[1]
G3/G4
[2]
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[3]
73 (29.2%)
[4]
[26] array · 5 items
[0]
[1]
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[2]
5 (2.0%)
[3]
14 (5.6%)
[4]
[27] array · 5 items
[0]
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[1]
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[2]
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[3]
80 (32.0%)
[4]
0.360
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[1]
Yes
[2]
151 (60.4%)
[3]
135 (54.0%)
[4]
[29] array · 5 items
[0]
[1]
Missing
[2]
26 (10.4)
[3]
35 (14.0%)
[4]
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[2]
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[3]
141 (56.4%)
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<0.001
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[1]
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[3]
54 (21.6%)
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[1]
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4 (1.6%)
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[0]
[1]
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51 (20.4%)
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[0]
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[1]
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[2]
54 (21.6%)
[3]
57 (22.8%)
[4]
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[0]
[1]
Yes
[2]
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188 (75.2%)
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[0]
[1]
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[2]
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5 (2.0%)
[4]
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[0]
Alcohol history
[1]
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[2]
86 (35.0%)
[3]
71 (28.4%)
[4]
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[0]
[1]
Yes
[2]
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[1]
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[3]
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[0]
[1]
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[2]
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[3]
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[0]
[1]
White
[2]
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[3]
213 (85.2%)
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[1]
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[3]
9 (3.6%)
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[0]
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Mut
[2]
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[3]
161 (64.4%)
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[1]
WT
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[3]
85 (33.6%)
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[0]
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[2]
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[1]
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[2]
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204 (81.6%)
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[1]
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[4]
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[0]
HPV status
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223 (89.2%)
[3]
186 (74.4%)
[4]
<0.001
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[0]
[1]
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25 (10.0%)
[3]
64 (25.6%)
[4]
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[0]
[1]
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[3]
NA
[4]
locator
section[15]/table-wrap[1]#T1
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The univariate and multivariate analyses of overall survival according to HMMR expression, after adjusting for other potential predictors in TCGA (n = 500).
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PMC7982417
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16
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High HMMR Expression Is Associated With Adverse Outcomes in HNSCC
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17
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Table 2
caption
The univariate and multivariate analyses of overall survival according to HMMR expression, after adjusting for other potential predictors in TCGA (n = 500).
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[0] array · 3 items
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Characteristics
[1]
Univariate analysis
[2]
Multivariate analysis
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[1]
HR (95% CI)
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p-value
[3]
HR (95% CI)
[4]
p-value
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[1]
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0.160
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[4]
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[1]
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[2]
0.097
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1.606 (1.141–2.259)
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0.007
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[1]
4.794 (1.765–13.016)
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0.002
[3]
4.037 (1.126–14.476)
[4]
0.032
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[2]
0.245
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[4]
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[2]
0.054
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[0]
Histologic grade (G1–2 vs. G3–4)
[1]
0.942 (0.690–1.287)
[2]
0.709
[3]
[4]
[9] array · 5 items
[0]
Smoker (No vs. Yes)
[1]
1.085 (0.775–1.520)
[2]
0.633
[3]
[4]
[10] array · 5 items
[0]
Alcohol history (No vs. Yes)
[1]
0.967 (0.727–1.288)
[2]
0.821
[3]
[4]
[11] array · 5 items
[0]
TP53 status (WT vs. Mut)
[1]
1.531 (1.119–2.094)
[2]
0.008
[3]
1.948 (1.343–2.825)
[4]
<0.001
[12] array · 5 items
[0]
PIK3CA status (WT vs. Mut)
[1]
0.988 (0.702–1.392)
[2]
0.946
[3]
[4]
[13] array · 5 items
[0]
Radiation therapy (No vs. Yes)
[1]
0.623 (0.459–0.846)
[2]
0.002
[3]
0.502 (0.355–0.710)
[4]
<0.001
[14] array · 5 items
[0]
Race (White vs. Non–white)
[1]
1.477 (0.977–2.231)
[2]
0.064
[3]
1.055 (0.628–1.775)
[4]
0.839
[15] array · 5 items
[0]
HPV (Negative vs. Positive)
[1]
1.335 (0.894–1.995)
[2]
0.158
[3]
[4]
[16] array · 5 items
[0]
HMMR (Low vs. High)
[1]
1.432 (1.094–1.875)
[2]
0.009
[3]
1.628 (1.169–2.266)
[4]
0.004
locator
section[16]/table-wrap[1]#T2
[4] object · 16 fields
id
asset:table:pmid:33763352:3
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table
format
jats-table
media_type
application/vnd.jats.table+json
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null
sha256
sha256:22269dc0f84928e7e4d6b4580db2377d4ae96d6110c981ca6722431a43f069fd
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read_table
reader_status
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identifier
section[16]/table-wrap[2]#T3
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null
note
The univariate and multivariate analyses of overall survival according to HMMR expression, after adjusting for other potential predictors in GSE41613 (n = 97).
structure object · 5 fields
pmcid
PMC7982417
section_index
16
section_title
High HMMR Expression Is Associated With Adverse Outcomes in HNSCC
row_count
7
column_count
5
table object · 8 fields
label
Table 3
caption
The univariate and multivariate analyses of overall survival according to HMMR expression, after adjusting for other potential predictors in GSE41613 (n = 97).
rows array · 7 items
[0] array · 3 items
[0]
Characteristics
[1]
Univariate analysis
[2]
Multivariate analysis
[1] array · 5 items
[0]
[1]
HR (95% CI)
[2]
P-value
[3]
HR (95% CI)
[4]
P-value
[2] array · 5 items
[0]
Clinical stage (I–II vs. III–IV)
[1]
3.828 (1.958–7.482)
[2]
<0.001
[3]
6.078 (2.603–14.919)
[4]
<0.001
[3] array · 5 items
[0]
Age (≤ 60 vs. >60)
[1]
0.739 (0.423–1.292)
[2]
0.289
[3]
[4]
[4] array · 5 items
[0]
Gender (Female vs. Male)
[1]
0.891 (0.493–1.611)
[2]
0.703
[3]
[4]
[5] array · 5 items
[0]
Comprehensive treatment (No vs. Yes)
[1]
1.671 (0.939–2.974)
[2]
0.081
[3]
0.532 (0.256–1.104)
[4]
0.090
[6] array · 5 items
[0]
HMMR (Low vs. High)
[1]
2.240 (1.189–4.221)
[2]
0.013
[3]
2.238 (1.187–4.221)
[4]
0.013
locator
section[16]/table-wrap[2]#T3
[5] object · 16 fields
id
asset:table:pmid:33763352:4
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:aaee9899b094d3518454db70bdc9a918df0f105606e12b98368a59bffe926e9a
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open
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verified
reader
read_table
reader_status
available
identifier
section[19]/table-wrap[1]#T4
version
null
note
Hallmark Pathways enriched in high- and low-risk groups by using GSEA.
structure object · 5 fields
pmcid
PMC7982417
section_index
19
section_title
Functional Enrichment Analysis of High- and Low-HMMR Expression Samples
row_count
20
column_count
5
table object · 8 fields
label
Table 4
caption
Hallmark Pathways enriched in high- and low-risk groups by using GSEA.
rows array · 20 items
[0] array · 5 items
[0]
ID
[1]
NES
[2]
p value
[3]
p.adjust
[4]
FDR
[1] array · 5 items
[0]
HALLMARK_KRAS_SIGNALING_DN
[1]
−1.909
[2]
0.001
[3]
0.027
[4]
0.018
[2] array · 5 items
[0]
HALLMARK_MYOGENESIS
[1]
−2.822
[2]
0.001
[3]
0.027
[4]
0.018
[3] array · 5 items
[0]
HALLMARK_PANCREAS_BETA_CELLS
[1]
1.692
[2]
0.004
[3]
0.045
[4]
0.03
[4] array · 5 items
[0]
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
[1]
−1.55
[2]
0.004
[3]
0.045
[4]
0.03
[5] array · 5 items
[0]
HALLMARK_MYC_TARGETS_V2
[1]
1.722
[2]
0.005
[3]
0.045
[4]
0.03
[6] array · 5 items
[0]
HALLMARK_SPERMATOGENESIS
[1]
2.529
[2]
0.009
[3]
0.047
[4]
0.031
[7] array · 5 items
[0]
HALLMARK_E2F_TARGETS
[1]
4.224
[2]
0.012
[3]
0.047
[4]
0.031
[8] array · 5 items
[0]
HALLMARK_G2M_CHECKPOINT
[1]
3.904
[2]
0.012
[3]
0.047
[4]
0.031
[9] array · 5 items
[0]
HALLMARK_INTERFERON_GAMMA_RESPONSE
[1]
1.679
[2]
0.012
[3]
0.047
[4]
0.031
[10] array · 5 items
[0]
HALLMARK_MTORC1_SIGNALING
[1]
1.524
[2]
0.012
[3]
0.047
[4]
0.031
[11] array · 5 items
[0]
HALLMARK_MYC_TARGETS_V1
[1]
1.971
[2]
0.012
[3]
0.047
[4]
0.031
[12] array · 5 items
[0]
HALLMARK_MITOTIC_SPINDLE
[1]
2.916
[2]
0.012
[3]
0.047
[4]
0.031
[13] array · 5 items
[0]
HALLMARK_INTERFERON_ALPHA_RESPONSE
[1]
1.834
[2]
0.012
[3]
0.047
[4]
0.031
[14] array · 5 items
[0]
HALLMARK_INFLAMMATORY_RESPONSE
[1]
1.268
[2]
0.024
[3]
0.084
[4]
0.055
[15] array · 5 items
[0]
HALLMARK_ANDROGEN_RESPONSE
[1]
1.51
[2]
0.025
[3]
0.084
[4]
0.055
[16] array · 5 items
[0]
HALLMARK_APICAL_SURFACE
[1]
−1.518
[2]
0.034
[3]
0.105
[4]
0.069
[17] array · 5 items
[0]
HALLMARK_ALLOGRAFT_REJECTION
[1]
1.248
[2]
0.036
[3]
0.105
[4]
0.069
[18] array · 5 items
[0]
HALLMARK_P53_PATHWAY
[1]
−1.331
[2]
0.044
[3]
0.12
[4]
0.079
[19] array · 5 items
[0]
HALLMARK_IL6_JAK_STAT3_SIGNALING
[1]
1.396
[2]
0.046
[3]
0.12
[4]
0.079
locator
section[19]/table-wrap[1]#T4
[6] object · 16 fields
id
asset:table:pmid:33763352:5
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table
format
jats-table
media_type
application/vnd.jats.table+json
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null
sha256
sha256:62724a727b2fe82ac4bd00784e9b0d794f62f125a48656a739687bc9af135a2f
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read_table
reader_status
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section[21]/table-wrap[1]#T5
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null
note
Demographic and clinical characteristics of HNSCC patients with low- and high-expression HMMR in protein level (n = 70).
structure object · 5 fields
pmcid
PMC7982417
section_index
21
section_title
Validation the HMMR Expression and Prognostic Value of HMMR in HNSCC
row_count
19
column_count
5
table object · 8 fields
label
Table 5
caption
Demographic and clinical characteristics of HNSCC patients with low- and high-expression HMMR in protein level (n = 70).
rows array · 19 items
[0] array · 4 items
[0]
Characters
[1]
level
[2]
HMMR expression
[3]
p
[1] array · 5 items
[0]
[1]
[2]
Low (n = 27)
[3]
High (n = 43)
[4]
[2] array · 5 items
[0]
Gender
[1]
Female
[2]
2 (7.4%)
[3]
3 (7.0%)
[4]
0.999
[3] array · 5 items
[0]
[1]
Male
[2]
25 (92.6%)
[3]
40 (93.0%)
[4]
[4] array · 5 items
[0]
Age
[1]
<60 years
[2]
15 (55.6%)
[3]
17 (39.5%)
[4]
0.685
[5] array · 5 items
[0]
[1]
≥60 years
[2]
12 (44.4%)
[3]
26 (60.5%)
[4]
[6] array · 5 items
[0]
T classification
[1]
T1–T2
[2]
13 (48.1%)
[3]
17 (39.5%)
[4]
0.478
[7] array · 5 items
[0]
[1]
T3–T4
[2]
14 (51.9%)
[3]
26 (60.5%)
[4]
[8] array · 5 items
[0]
N classification
[1]
N0–1
[2]
24 (88.9%)
[3]
31 (72.1%)
[4]
0.137
[9] array · 5 items
[0]
[1]
N2–3
[2]
3 (11.1%)
[3]
12 (27.9%)
[4]
[10] array · 5 items
[0]
Clinical stage
[1]
Stage I–II
[2]
12 (44.4%)
[3]
14 (32.6%)
[4]
0.316
[11] array · 5 items
[0]
[1]
Stage III–IV
[2]
15 (55.6%)
[3]
29 (67.4%)
[4]
[12] array · 5 items
[0]
Histologic grade
[1]
G1
[2]
16 (59.3%)
[3]
13 (30.2%)
[4]
0.055
[13] array · 5 items
[0]
[1]
G2
[2]
6 (22.2%)
[3]
15 (34.9%)
[4]
[14] array · 5 items
[0]
[1]
G3
[2]
6 (18.5%)
[3]
15 (34.9%)
[4]
[15] array · 5 items
[0]
Anatomic site
[1]
Oral cavity
[2]
8 (29.6%)
[3]
7 (16.3%)
[4]
0.549
[16] array · 5 items
[0]
[1]
Oropharynx
[2]
1 (3.7%)
[3]
3 (7.0%)
[4]
[17] array · 5 items
[0]
[1]
Hypopharynx
[2]
1 (3.7%)
[3]
3 (7.0%)
[4]
[18] array · 5 items
[0]
[1]
Larynx
[2]
17 (63.0%)
[3]
30 (67.8%)
[4]
locator
section[21]/table-wrap[1]#T5
[7] object · 16 fields
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asset:table:pmid:33763352:6
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table
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jats-table
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application/vnd.jats.table+json
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null
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sha256:c98e71c35acdbb11f3e3d379a20e369acc03463bf588a837e87abf78f52c5e82
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1038
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read_table
reader_status
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identifier
section[21]/table-wrap[2]#T6
version
null
note
The multivariate analyses of overall survival and progression-free survival according to HMMR protein expression, after adjusting for other potential predictors (n = 70).
structure object · 5 fields
pmcid
PMC7982417
section_index
21
section_title
Validation the HMMR Expression and Prognostic Value of HMMR in HNSCC
row_count
8
column_count
5
table object · 8 fields
label
Table 6
caption
The multivariate analyses of overall survival and progression-free survival according to HMMR protein expression, after adjusting for other potential predictors (n = 70).
rows array · 8 items
[0] array · 3 items
[0]
Characteristics
[1]
Overall survival
[2]
Multivariate analysis
[1] array · 5 items
[0]
[1]
HR (95% CI)
[2]
P-value
[3]
HR (95% CI)
[4]
P-value
[2] array · 5 items
[0]
Clinical stage (I–IIvs. III–IV)
[1]
2.644 (0.966–7.234)
[2]
0.058
[3]
3.109 (1.157–8.353)
[4]
0.024
[3] array · 5 items
[0]
Age (≤ 60 vs. >60)
[1]
1.270 (0.600–2.689)
[2]
0.533
[3]
1.296 (0.635–2.647)
[4]
0.476
[4] array · 5 items
[0]
Gender (Female vs. Male)
[1]
0.754 (0.076–7.516)
[2]
0.810
[3]
0.688 (0.071–6.646)
[4]
0.747
[5] array · 5 items
[0]
Histologic grade (G1 vs. G2/G3)
[1]
1.075 (0.514–2.249)
[2]
0.848
[3]
1.134 (0.559–2.298)
[4]
0.728
[6] array · 5 items
[0]
Anatomic site (Oral cavity/Oropharynx/Hypopharynx vs. Larynx)
[1]
2.049 (0.782–5.371)
[2]
0.144
[3]
1.949 (0.802–4.737)
[4]
0.141
[7] array · 5 items
[0]
HMMR (Low vs. High)
[1]
2.288 (1.019–5.137)
[2]
0.045
[3]
2.247 (1.048–4.817)
[4]
0.038
locator
section[21]/table-wrap[2]#T6
gaps array · 2 items
[0]
asset:data:geo:GSE41613 not downloaded
[1]
asset:data:geo:GSE41613 licence not read
analysis object · 4 fields
state
partial
methods array · 5 items
[0] object · 10 fields
id
method-1
family
correlation_analysis
specific
pearson
label
Correlation analysis
dsl_operations array · 1 item
[0]
pearson_r
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
paired_numeric_columns
evidence object · 3 fields
score
1
band
verbatim
quote
The copy number variation (CNV) and methylation level data of HMMR were obtained through the cBioPortal web platform (https://www.cbioportal.org/) and a comparison of the varying HMMR gene expressions in HMMR copy number variation groups (Kruskal–Wallis test) and the correlation between HMMR methylation level and HMMR gene expression (Person correlation) was conducted.
[1] object · 10 fields
id
method-2
family
group_comparison
specific
student_t_test
label
Group comparison
dsl_operations array · 0 items
missing_operations array · 1 item
[0]
student_t
expressible
false
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
0.8
band
high
quote
Student's t-test
[2] object · 10 fields
id
method-3
family
group_comparison
specific
wilcoxon
label
Group comparison
dsl_operations array · 0 items
missing_operations array · 1 item
[0]
group_comparison_wilcoxon
expressible
false
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
0.8
band
high
quote
Wilcoxon
[3] object · 10 fields
id
method-4
family
differential_expression
specific
limma_voom
label
Differential expression analysis
dsl_operations array · 3 items
[0]
normalise_counts
[1]
differential_expression_fit
[2]
fdr_bh
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
count_matrix_with_condition
evidence object · 3 fields
score
0.8
band
high
quote
limma
[4] object · 10 fields
id
method-5
family
network_analysis
specific
pathway_enrichment
label
Network / pathway analysis
dsl_operations array · 1 item
[0]
pathway_enrich
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
edge_list
evidence object · 3 fields
score
0.8
band
high
quote
GO enrichment
targets array · 0 items
gaps array · 1 item
[0]
method.reader_differs_from_extractor
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
true
required_operations array · 1 item
[0]
pearson_r
missing_operations array · 0 items
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: pearson.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 1 item
[0]
GSE41613
resolved_accessions array · 1 item
[0]
GSE41613
statements array · 1 item
[0]
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/Supplementary Material.
basis
The paper names GSE41613 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 1 item
[0]
pearson_r
assets array · 8 items
[0]
source:pmid:33763352
[1]
data:geo:GSE41613
[2]
asset:table:pmid:33763352:1
[3]
asset:table:pmid:33763352:2
[4]
asset:table:pmid:33763352:3
[5]
asset:table:pmid:33763352:4
[6]
asset:table:pmid:33763352:5
[7]
asset:table:pmid:33763352:6
steps array · 1 item
[0]
run_analysis
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE41613
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-10-31T18:28:34Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
3
usage object · 3 fields
prompt_tokens
42404
completion_tokens
1907
cached_tokens
512
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
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null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:33763352
type
paper
label
pmid:33763352
[1] object · 3 fields
id
source:pmid:33763352
type
manuscript
label
PMID 33763352 full text
[2] object · 3 fields
id
data:geo:GSE41613
type
dataset
label
GEO GSE41613
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:33763352
type
paper
label
pmid:33763352
[1] object · 3 fields
id
source:pmid:33763352
type
manuscript
label
PMID 33763352 full text
[2] object · 3 fields
id
data:geo:GSE41613
type
dataset
label
GEO GSE41613
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-33763352
type
extraction
used array · 1 item
[0]
source:pmid:33763352
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE41613
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE41613
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
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gaps array · 7 items
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asset:data:geo:GSE41613 licence not read
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asset:data:geo:GSE41613 not downloaded
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execution.not_run
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method.reader_differs_from_extractor
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review.human_critique
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review.machine_critique
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analysis
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f2132e96ae6c7a4e
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pearson_r
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source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
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The copy number variation (CNV) and methylation level data of HMMR were obtained through the cBioPortal web platform (https://www.cbioportal.org/) and a comparison of the varying HMMR gene expressions in HMMR copy number variation groups (Kruskal–Wallis test) and the correlation between HMMR methylation level and HMMR gene expression (Person correlation) was conducted.
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Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:33763352", "kind": "science-record", "revision": 7, "content_hash": "sha256:1872bd7bb59858cd50c40dece2d91c3b59be1a7179bfe058acdbc2080ab8af58", "created_at": "2026-11-01T15:41:30Z", "updated_at": "2026-11-01T22:03:24Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "High Expression of Hyaluronan-Mediated Motility Receptor Predicts Adverse Outcomes: A Potential Therapeutic Target for Head and Neck Squamous Cell Carcinoma.", "doi": "10.3389/fonc.2021.608842", "pmid": "33763352", "authors": ["Tianzhu Lu", "Yahan Zheng", "Xiaochang Gong", "Qiaoli Lv", "Junjun Chen", "Ziwei Tu", "Shaojun Lin", "Jianji Pan", "Qiaojuan Guo", "Jingao Li"], "journal": "Frontiers in oncology", "year": 2021, "abstract": "Background: Several studies have shown that the hyaluronan-mediated motility receptor (HMMR) is overexpressed in various cancers and could be a potential prognostic factor. However, further research is still required to determine the prognostic value and potential function of HMMR in head and neck squamous cell carcinoma (HNSCC). Materials and Methods: Transcriptomic expression data were collected from the Cancer Genome Atlas database (TCGA) and Gene Expression Omnibus and the differences in HMMR expression between normal and tumor tissues were analyzed. The correlation between the methylation level of HMMR and its mRNA expression was analyzed via cBioPortal. Additionally, the data obtained from TCGA was analyzed with MethSurv to determine the prognostic value of the HMMR methylation levels in HNSCC. Gene set enrichment analysis (GSEA) and single sample GSEA (ssGSEA) were used to explore the potential biological functions of HMMR. Results: HMMR was highly expressed in HNSCC tumor tissue compared to normal tissue (p < 0.001). Multivariate analysis (MAV) showed that high HMMR mRNA expression was an independent prognostic factor of overall survival (OS) in TCGA (HR = 1.628, 95% CI: 1.169-2.266, p = 0.004) and GSE41613 data (HR = 2.238, p = 0.013). The methylation level of HMMR negatively correlated with the HMMR expression (R = -0.12, p < 0.001), and patients with low HMMR methylation had worse OS than patients with high methylation (p < 0.001). GSEA found that HMMR expression was associated with the KARS, EMT, and G2M checkpoint pathways, as well as the interferon-gamma and interferon-alpha responses, whereas ssGSEA showed that HMMR expression positively correlated with the infiltration level of Th2 cells. MAV confirmed that high HMMR protein expression was an inferior independent factor for OS (HR = 2.288, p = 0.045) and progression-free survival (HR = 2.247, p = 0.038) in 70 HNSCC. Conclusions: This study demonstrated that the upregulation of HMMR mRNA and protein in HNSCC is a biomarker for poor prognosis. The biological functions of HMMR are potentially related to the KARS, EMT, and G2M checkpoint pathways, as well as the interferon-gamma and interferon-alpha responses. These findings help to elucidate the role of HMMR in carcinogenesis and lay a foundation for further study.", "claims": [{"id": "claim-method", "statement": "The copy number variation (CNV) and methylation level data of HMMR were obtained through the cBioPortal web platform (https://www.cbioportal.org/) and a comparison of the varying HMMR gene expressions in HMMR copy number variation groups (Kruskal–Wallis test) and the correlation between HMMR methylation level and HMMR gene expression (Person correlation) was conducted.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:33763352", "locator": "sections[8] \"HMMR Methylation Level and Its Prognosis Analysis\" paragraph 2", "quote": "The copy number variation (CNV) and methylation level data of HMMR were obtained through the cBioPortal web platform (https://www.cbioportal.org/) and a comparison of the varying HMMR gene expressions in HMMR copy number variation groups (Kruskal–Wallis test) and the correlation between HMMR methylation level and HMMR gene expression (Person correlation) was conducted."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/Supplementary Material.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:33763352", "locator": "sections[23] \"Data Availability Statement\" paragraph 2", "quote": "The datasets presented in this study can be found in online repositories. 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This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE41613"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE41613"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:33763352", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.3389/fonc.2021.608842", "sha256": "sha256:4b0ce834ad27dc8bd84495bfe9f33b38d70dae0f6ffb44df39ae961073baec18", "bytes": 51426, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.3389/fonc.2021.608842", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC7982417", "source": "europe_pmc_fulltext", "coverage": "whole_body", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:GSE41613", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41613", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE41613", "version": null, "note": "The datasets presented in this study can be found in online repositories. 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(7.4%)", "3 (7.0%)", "0.999"], ["", "Male", "25 (92.6%)", "40 (93.0%)", ""], ["Age", "<60 years", "15 (55.6%)", "17 (39.5%)", "0.685"], ["", "≥60 years", "12 (44.4%)", "26 (60.5%)", ""], ["T classification", "T1–T2", "13 (48.1%)", "17 (39.5%)", "0.478"], ["", "T3–T4", "14 (51.9%)", "26 (60.5%)", ""], ["N classification", "N0–1", "24 (88.9%)", "31 (72.1%)", "0.137"], ["", "N2–3", "3 (11.1%)", "12 (27.9%)", ""], ["Clinical stage", "Stage I–II", "12 (44.4%)", "14 (32.6%)", "0.316"], ["", "Stage III–IV", "15 (55.6%)", "29 (67.4%)", ""], ["Histologic grade", "G1", "16 (59.3%)", "13 (30.2%)", "0.055"], ["", "G2", "6 (22.2%)", "15 (34.9%)", ""], ["", "G3", "6 (18.5%)", "15 (34.9%)", ""], ["Anatomic site", "Oral cavity", "8 (29.6%)", "7 (16.3%)", "0.549"], ["", "Oropharynx", "1 (3.7%)", "3 (7.0%)", ""], ["", "Hypopharynx", "1 (3.7%)", "3 (7.0%)", ""], ["", "Larynx", "17 (63.0%)", "30 (67.8%)", ""]], "row_count": 19, "column_count": 5, "numeric_cells": 47, "header_rows": 2, "locator": "section[21]/table-wrap[1]#T5"}}, {"id": "asset:table:pmid:33763352:6", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:c98e71c35acdbb11f3e3d379a20e369acc03463bf588a837e87abf78f52c5e82", "bytes": 1038, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[21]/table-wrap[2]#T6", "version": null, "note": "The multivariate analyses of overall survival and progression-free survival according to HMMR protein expression, after adjusting for other potential predictors (n = 70).", "structure": {"pmcid": "PMC7982417", "section_index": 21, "section_title": "Validation the HMMR Expression and Prognostic Value of HMMR in HNSCC", "row_count": 8, "column_count": 5}, "table": {"label": "Table 6", "caption": "The multivariate analyses of overall survival and progression-free survival according to HMMR protein expression, after adjusting for other potential predictors (n = 70).", "rows": [["Characteristics", "Overall survival", "Multivariate analysis"], ["", "HR (95% CI)", "P-value", "HR (95% CI)", "P-value"], ["Clinical stage (I–IIvs. III–IV)", "2.644 (0.966–7.234)", "0.058", "3.109 (1.157–8.353)", "0.024"], ["Age (≤ 60 vs. >60)", "1.270 (0.600–2.689)", "0.533", "1.296 (0.635–2.647)", "0.476"], ["Gender (Female vs. Male)", "0.754 (0.076–7.516)", "0.810", "0.688 (0.071–6.646)", "0.747"], ["Histologic grade (G1 vs. G2/G3)", "1.075 (0.514–2.249)", "0.848", "1.134 (0.559–2.298)", "0.728"], ["Anatomic site (Oral cavity/Oropharynx/Hypopharynx vs. Larynx)", "2.049 (0.782–5.371)", "0.144", "1.949 (0.802–4.737)", "0.141"], ["HMMR (Low vs. High)", "2.288 (1.019–5.137)", "0.045", "2.247 (1.048–4.817)", "0.038"]], "row_count": 8, "column_count": 5, "numeric_cells": 27, "header_rows": 2, "locator": "section[21]/table-wrap[2]#T6"}}], "gaps": ["asset:data:geo:GSE41613 not downloaded", "asset:data:geo:GSE41613 licence not read"]}, "analysis": {"state": "partial", 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"capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R1", "reachable": true, "accessions": ["GSE41613"], "resolved_accessions": ["GSE41613"], "statements": ["The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/Supplementary Material."], "basis": "The paper names GSE41613 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. 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