Corpus Engine Towards a reproducible .science file.
← All .science files

pmid:33778070

Bcl-2 Is Involved in Cardiac Hypertrophy through PI3K-Akt Pathway.

Xianwei Meng · Jun Cui · Guibin He

BioMed research international · 2021 doi:10.1155/2021/6615502

Paper

complete

Experiment

partial

Data

partial

Analysis

partial

Execution

absent

Execution evidence has not yet been added to this .science file. Explore its methods, data and open questions to plan the next step.
Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
id
pmid:33778070
kind
science-record
content_hash
sha256:09f3f81a442eb5abcb43697fbbce5b21345501b7cc90eb9c957d68ba4087e587
schema
https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json
created_at
2026-11-01T15:41:30Z
updated_at
2026-11-01T22:03:26Z
generator object · 2 fields
name
corpus-assay-engine
run_id
reading-sci-2026-11-01
paper object · 10 fields
state
complete
title
Bcl-2 Is Involved in Cardiac Hypertrophy through PI3K-Akt Pathway.
doi
10.1155/2021/6615502
pmid
33778070
authors array · 3 items
[0]
Xianwei Meng
[1]
Jun Cui
[2]
Guibin He
journal
BioMed research international
year
2021
abstract
Cardiac hypertrophy (CH) is a common cause of sudden cardiac death and heart failure, resulting in a significant medical burden. The present study is aimed at exploring potential CH-related pathways and the key downstream effectors. The gene expression profile of GSE129090 was obtained from the Gene Expression Omnibus database (GEO), and 1325 differentially expressed genes (DEGs) were identified, including 785 upregulated genes and 540 downregulated genes. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Reactome pathway enrichment analysis of DEGs were then performed. Although there were no pathways enriched by downregulated genes, many CH-related pathways were identified by upregulated genes, including PI3K-Akt signaling pathway, extracellular matrix- (ECM-) receptor interaction, regulation of actin cytoskeleton, and hypertrophic cardiomyopathy (HCM). In the deeper analysis of PI3K-Akt signaling pathway, we found all the signaling transduction pointed to B cell lymphoma-2- (Bcl-2-) mediated cell survival. We then demonstrated that PI3K-Akt signaling pathway was indeed activated in cardiac hypertrophy. Furthermore, no matter LY294002, an inhibitor of the PI3K/AKT signaling pathway, or Venetoclax, a selective Bcl-2 inhibitor, protected against cardiac hypertrophy. In conclusion, these data indicate that Bcl-2 is involved in cardiac hypertrophy as a key downstream effector of PI3K-Akt signaling pathway, suggesting a potential therapeutic target for the clinical management of cardiac hypertrophy.
claims array · 2 items
[0] object · 6 fields
id
claim-method
statement
Differences between groups were estimated using unpaired Student's t-test.
kind
methodological
target
null
evidence array · 1 item
[0] object · 3 fields
asset
source:pmid:33778070
locator
sections[10] "2.8. Statistical Analysis" paragraph 2
quote
Differences between groups were estimated using unpaired Student's t-test.
state
complete
[1] object · 6 fields
id
claim-data-access
statement
Please contact the corresponding author for all data requests.
kind
methodological
target
null
evidence array · 1 item
[0] object · 3 fields
asset
source:pmid:33778070
locator
sections[18] "Data Availability" paragraph 2
quote
Please contact the corresponding author for all data requests.
state
complete
gaps array · 0 items
experiment object · 8 fields
state
partial
objective
null
steps array · 3 items
[0] object · 13 fields
id
read_published_estimate
order
1
name
Read the published estimate from the source
kind
other
state
complete
blocked_on
null
description
The claim, method and evidence span published with the source article.
parameters object · 0 fields
inputs array · 1 item
[0]
source:pmid:33778070
outputs array · 1 item
[0]
the published estimate and its evidence
instruments array · 0 items
reagents array · 0 items
[1] object · 13 fields
id
obtain_source_data
order
2
name
Obtain the source data from the named repository
kind
data-preparation
state
complete
blocked_on
null
description
The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.
parameters object · 0 fields
inputs array · 1 item
[0]
data:geo:GSE129090
outputs array · 1 item
[0]
the source data with its repository provenance
instruments array · 0 items
reagents array · 0 items
[2] object · 13 fields
id
run_analysis
order
3
name
Run the published analysis
kind
analysis
state
blocked
blocked_on
method:student_t
description
Apply the paper's statistical method to the resolved series and compare the result with the published target.
parameters object · 0 fields
inputs array · 1 item
[0]
data:geo:GSE129090
outputs array · 1 item
[0]
the replicated result and its comparison
instruments array · 0 items
reagents array · 0 items
materials array · 0 items
instruments array · 0 items
reagents array · 0 items
conditions object · 0 fields
gaps array · 1 item
[0]
step:run_analysis blocked on method:student_t
data object · 3 fields
state
partial
assets array · 2 items
[0] object · 15 fields
id
source:pmid:33778070
role
manuscript
format
xml
media_type
application/xml
uri
https://doi.org/10.1155/2021/6615502
sha256
sha256:a28bb23abc7ee2da6e124c15d6f5d590e5e4ce9fa50772ecb66be571e4bdce31
bytes
28516
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
10.1155/2021/6615502
version
null
note
Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.
structure object · 4 fields
pmcid
PMC7979306
source
europe_pmc_fulltext
coverage
whole_body
text_hash_scope
rendered_section_body
[1] object · 15 fields
id
data:geo:GSE129090
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE129090
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE129090
version
null
note
Please contact the corresponding author for all data requests.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
Please contact the corresponding author for all data requests.
access_statement_kind
data_availability_statement
sample_accessions array · 8 items
[0]
GSM3693127
[1]
GSM3693128
[2]
GSM3693129
[3]
GSM3693130
[4]
GSM3693131
[5]
GSM3693132
[6]
GSM3693133
[7]
GSM3693134
sample_count
8
group_sizes
null
group_sizes_basis
null
platform
6885
taxon
Mus musculus
title
Cardiomyocyte Transcriptomes in Cardiac Development and Hypertrophy
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
gaps array · 2 items
[0]
asset:data:geo:GSE129090 not downloaded
[1]
asset:data:geo:GSE129090 licence not read
analysis object · 4 fields
state
partial
methods array · 2 items
[0] object · 10 fields
id
method-1
family
group_comparison
specific
student_t_test
label
Group comparison
dsl_operations array · 0 items
missing_operations array · 1 item
[0]
student_t
expressible
false
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
1
band
verbatim
quote
Differences between groups were estimated using unpaired Student's t-test.
[1] object · 10 fields
id
method-2
family
network_analysis
specific
pathway_enrichment
label
Network / pathway analysis
dsl_operations array · 1 item
[0]
pathway_enrich
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
edge_list
evidence object · 3 fields
score
0.7
band
medium
quote
pathway enrichment
targets array · 0 items
gaps array · 1 item
[0]
method.student_t
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
false
required_operations array · 0 items
missing_operations array · 1 item
[0]
student_t
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: student_t_test.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 1 item
[0]
GSE129090
resolved_accessions array · 1 item
[0]
GSE129090
statements array · 1 item
[0]
Please contact the corresponding author for all data requests.
basis
The paper names GSE129090 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 0 items
assets array · 2 items
[0]
source:pmid:33778070
[1]
data:geo:GSE129090
steps array · 0 items
must_build object · 5 fields
dsl_operations array · 1 item
[0] object · 3 fields
operation
student_t
priority
null
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE129090
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-10-31T18:28:34Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
3
usage object · 3 fields
prompt_tokens
24611
completion_tokens
887
cached_tokens
8200
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:33778070
type
paper
label
pmid:33778070
[1] object · 3 fields
id
source:pmid:33778070
type
manuscript
label
PMID 33778070 full text
[2] object · 3 fields
id
data:geo:GSE129090
type
dataset
label
GEO GSE129090
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:33778070
type
paper
label
pmid:33778070
[1] object · 3 fields
id
source:pmid:33778070
type
manuscript
label
PMID 33778070 full text
[2] object · 3 fields
id
data:geo:GSE129090
type
dataset
label
GEO GSE129090
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-33778070
type
extraction
used array · 1 item
[0]
source:pmid:33778070
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE129090
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE129090
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:33778070
parent_hash
sha256:b3b630969f2d4663768fa6c27fa935fe4336c11319fbad1203a2eb0005013add
fork_of
null
gaps array · 8 items
[0]
asset:data:geo:GSE129090 licence not read
[1]
asset:data:geo:GSE129090 not downloaded
[2]
execution.not_run
[3]
method.student_t
[4]
review.human_critique
[5]
review.independent_reader
[6]
review.machine_critique
[7]
step:run_analysis blocked on method:student_t
assays array · 2 items
[0] object · 11 fields
role
data_generation
definition_id
animal_model
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.99
evidence array · 4 items
[0]
ratory Animals (NIH, 8th Edition, 2011). The mice were maintained in individually ventilated cages
[1]
explosion and 60%-75% diameter of ligation, mice were administrated with normal saline (NS, 1 ml/d
[2]
) for 8 weeks; for the TAC + LY294002 group, mice were treated with LY294002 (20 mg/kg/day, Sigma,
[3]
l injections; for the TAC+ Venetoclax group, mice were treated with Venetoclax (100 mg/kg/day, Sell
order_basis
paper_text_order:2255
id
assay:1
[1] object · 11 fields
role
analysis
definition_id
group_comparison
definition_version
f2132e96ae6c7a4e
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
Differences between groups were estimated using unpaired Student's t-test.
order_basis
consumes_earlier_output
id
assay:2
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:33778070", "kind": "science-record", "revision": 7, "content_hash": "sha256:09f3f81a442eb5abcb43697fbbce5b21345501b7cc90eb9c957d68ba4087e587", "created_at": "2026-11-01T15:41:30Z", "updated_at": "2026-11-01T22:03:26Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Bcl-2 Is Involved in Cardiac Hypertrophy through PI3K-Akt Pathway.", "doi": "10.1155/2021/6615502", "pmid": "33778070", "authors": ["Xianwei Meng", "Jun Cui", "Guibin He"], "journal": "BioMed research international", "year": 2021, "abstract": "Cardiac hypertrophy (CH) is a common cause of sudden cardiac death and heart failure, resulting in a significant medical burden. The present study is aimed at exploring potential CH-related pathways and the key downstream effectors. The gene expression profile of GSE129090 was obtained from the Gene Expression Omnibus database (GEO), and 1325 differentially expressed genes (DEGs) were identified, including 785 upregulated genes and 540 downregulated genes. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Reactome pathway enrichment analysis of DEGs were then performed. Although there were no pathways enriched by downregulated genes, many CH-related pathways were identified by upregulated genes, including PI3K-Akt signaling pathway, extracellular matrix- (ECM-) receptor interaction, regulation of actin cytoskeleton, and hypertrophic cardiomyopathy (HCM). In the deeper analysis of PI3K-Akt signaling pathway, we found all the signaling transduction pointed to B cell lymphoma-2- (Bcl-2-) mediated cell survival. We then demonstrated that PI3K-Akt signaling pathway was indeed activated in cardiac hypertrophy. Furthermore, no matter LY294002, an inhibitor of the PI3K/AKT signaling pathway, or Venetoclax, a selective Bcl-2 inhibitor, protected against cardiac hypertrophy. In conclusion, these data indicate that Bcl-2 is involved in cardiac hypertrophy as a key downstream effector of PI3K-Akt signaling pathway, suggesting a potential therapeutic target for the clinical management of cardiac hypertrophy.", "claims": [{"id": "claim-method", "statement": "Differences between groups were estimated using unpaired Student's t-test.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:33778070", "locator": "sections[10] \"2.8. Statistical Analysis\" paragraph 2", "quote": "Differences between groups were estimated using unpaired Student's t-test."}], "state": "complete"}, {"id": "claim-data-access", "statement": "Please contact the corresponding author for all data requests.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:33778070", "locator": "sections[18] \"Data Availability\" paragraph 2", "quote": "Please contact the corresponding author for all data requests."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "partial", "objective": null, "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:33778070"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE129090"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "blocked", "blocked_on": "method:student_t", "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE129090"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": ["step:run_analysis blocked on method:student_t"]}, "data": {"state": "partial", "assets": [{"id": "source:pmid:33778070", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1155/2021/6615502", "sha256": "sha256:a28bb23abc7ee2da6e124c15d6f5d590e5e4ce9fa50772ecb66be571e4bdce31", "bytes": 28516, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.1155/2021/6615502", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC7979306", "source": "europe_pmc_fulltext", "coverage": "whole_body", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:GSE129090", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE129090", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE129090", "version": null, "note": "Please contact the corresponding author for all data requests.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Please contact the corresponding author for all data requests.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM3693127", "GSM3693128", "GSM3693129", "GSM3693130", "GSM3693131", "GSM3693132", "GSM3693133", "GSM3693134"], "sample_count": 8, "group_sizes": null, "group_sizes_basis": null, "platform": "6885", "taxon": "Mus musculus", "title": "Cardiomyocyte Transcriptomes in Cardiac Development and Hypertrophy", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}], "gaps": ["asset:data:geo:GSE129090 not downloaded", "asset:data:geo:GSE129090 licence not read"]}, "analysis": {"state": "partial", "methods": [{"id": "method-1", "family": "group_comparison", "specific": "student_t_test", "label": "Group comparison", "dsl_operations": [], "missing_operations": ["student_t"], "expressible": false, "parameters": {}, "data_shapes": ["two_or_more_groups_continuous"], "evidence": {"score": 1.0, "band": "verbatim", "quote": "Differences between groups were estimated using unpaired Student's t-test."}}, {"id": "method-2", "family": "network_analysis", "specific": "pathway_enrichment", "label": "Network / pathway analysis", "dsl_operations": ["pathway_enrich"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["edge_list"], "evidence": {"score": 0.7, "band": "medium", "quote": "pathway enrichment"}}], "targets": [], "gaps": ["method.student_t"]}, "capability": {"state": "complete", "requirements": [{"capability_id": "capability:computational_analysis", "label": "Computational analysis platform", "assay_families": ["meta_analysis", "machine_learning", "survival_analysis", "statistical_regression", "pca", "molecular_docking", "network_analysis", "differential_expression", "gwas"], "availability_state": "owned", "tier_unlocked": "R1", "candidate": "Automated Assays Laravel application and simulated adapters"}], "gaps": []}, "readiness": {"state": "complete", "tier": "R1", "blocking_axis": "none", "blocked_on": "nothing:replicable_now", "axes": {"method": {"tier": "R1", "expressible": false, "required_operations": [], "missing_operations": ["student_t"], "basis": "The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: student_t_test."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R1", "reachable": true, "accessions": ["GSE129090"], "resolved_accessions": ["GSE129090"], "statements": ["Please contact the corresponding author for all data requests."], "basis": "The paper names GSE129090 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": [], "assets": ["source:pmid:33778070", "data:geo:GSE129090"], "steps": []}, "must_build": {"dsl_operations": [{"operation": "student_t", "unlocks_papers": null, "priority": null}], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:GSE129090"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-10-31T18:28:34Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": "verbatim"}, "calls": 3, "usage": {"prompt_tokens": 24611, "completion_tokens": 887, "cached_tokens": 8200}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:33778070", "type": "paper", "label": "pmid:33778070"}, {"id": "source:pmid:33778070", "type": "manuscript", "label": "PMID 33778070 full text"}, {"id": "data:geo:GSE129090", "type": "dataset", "label": "GEO GSE129090"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:33778070", "type": "paper", "label": "pmid:33778070"}, {"id": "source:pmid:33778070", "type": "manuscript", "label": "PMID 33778070 full text"}, {"id": "data:geo:GSE129090", "type": "dataset", "label": "GEO GSE129090"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-33778070", "type": "extraction", "used": ["source:pmid:33778070"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-GSE129090", "type": "accession_resolution", "used": ["data:geo:GSE129090"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:33778070", "parent_hash": "sha256:b3b630969f2d4663768fa6c27fa935fe4336c11319fbad1203a2eb0005013add", "fork_of": null, "generation": 6}, "gaps": ["asset:data:geo:GSE129090 licence not read", "asset:data:geo:GSE129090 not downloaded", "execution.not_run", "method.student_t", "review.human_critique", "review.independent_reader", "review.machine_critique", "step:run_analysis blocked on method:student_t"], "assays": [{"role": "data_generation", "definition_id": "animal_model", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["ratory Animals (NIH, 8th Edition, 2011). The mice were maintained in individually ventilated cages", "explosion and 60%-75% diameter of ligation, mice were administrated with normal saline (NS, 1 ml/d", ") for 8 weeks; for the TAC + LY294002 group, mice were treated with LY294002 (20 mg/kg/day, Sigma,", "l injections; for the TAC+ Venetoclax group, mice were treated with Venetoclax (100 mg/kg/day, Sell"], "order_basis": "paper_text_order:2255", "id": "assay:1"}, {"role": "analysis", "definition_id": "group_comparison", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["Differences between groups were estimated using unpaired Student's t-test."], "order_basis": "consumes_earlier_output", "id": "assay:2"}]}