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pmid:34414190

GINS1 Induced Sorafenib Resistance by Promoting Cancer Stem Properties in Human Hepatocellular Cancer Cells.

Sheng Li · Lina Wu · Hong Zhang · Xijuan Liu · Zilei Wang · Bin Dong · Guang Cao

Frontiers in cell and developmental biology · 2021 doi:10.3389/fcell.2021.711894

Paper

complete

Experiment

complete

Data

partial

Analysis

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Execution

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pmid:34414190
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title
GINS1 Induced Sorafenib Resistance by Promoting Cancer Stem Properties in Human Hepatocellular Cancer Cells.
doi
10.3389/fcell.2021.711894
pmid
34414190
authors array · 7 items
[0]
Sheng Li
[1]
Lina Wu
[2]
Hong Zhang
[3]
Xijuan Liu
[4]
Zilei Wang
[5]
Bin Dong
[6]
Guang Cao
journal
Frontiers in cell and developmental biology
year
2021
abstract
Hepatocellular carcinoma (HCC) is characterized by a high rate of incidence and recurrence, and resistance to chemotherapy may aggravate the poor prognosis of HCC patients. Sorafenib resistance is a conundrum to the treatment of advanced/recurrent HCC. Therefore, studies on the molecular pathogenesis of HCC and the resistance to sorafenib are of great interest. Here, we report that GINS1 was highly expressed in HCC tumors, associated with tumor grades, and predicted poor patient survival using Gene Expression Omnibus (GEO) databases exploration. Cell cycle, cell proliferation assay and in vivo xenograft mouse model indicated that knocking down GINS1 induced in G1/S phase cell cycle arrest and decreased tumor cells proliferation in vitro and in vivo. Spheroid formation assay results showed that GINS1 promoted the stem cell activity of HCC tumor cells. Furthermore, GEO database (GSE17112) analysis showed that HRAS oncogenic gene set was enriched in GINS1 high-expressed cancer cells, and quantitative real-time PCR, and Western blot results proved that GINS1 enhanced HCC progression through regulating HRAS signaling pathway. Moreover, knocking down endogenous GINS1 with shGINS1 increased the sensitivity of HCC cells to sorafenib, and restoring HRAS or stem associated pathway partly recovered the sorafenib resistance. Overall, the collective findings highlight GINS1 functions in hepatocarcinogenesis and sorafenib resistance, and indicate its potential use of GINS1 in drug-resistant HCC.
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Overall survival curves were plotted according to the Kaplan–Meier method and the generalized log-rank test was applied to analyze the survival curves.
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The original contributions presented in the study are included in the article/Supplementary Material; further inquiries can be directed to the corresponding author/s.
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Identification and validation of potential key long noncoding RNAs in sorafenib-resistant hepatocellular carcinoma cells
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RNA m6A methylation regulates sorafenib-resistance in liver cancer through FOXO3-mediated autophagy [RNA-seq]
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GSM363371
[425]
GSM363372
[426]
GSM363373
[427]
GSM363374
[428]
GSM363375
[429]
GSM363376
[430]
GSM363378
[431]
GSM363380
[432]
GSM363381
[433]
GSM363382
[434]
GSM363384
[435]
GSM363386
[436]
GSM363388
[437]
GSM363391
[438]
GSM363393
[439]
GSM363397
[440]
GSM363400
[441]
GSM363402
[442]
GSM363404
[443]
GSM363407
[444]
GSM363417
[445]
GSM363420
[446]
GSM363421
[447]
GSM363422
[448]
GSM363423
[449]
GSM363424
[450]
GSM363425
[451]
GSM363426
[452]
GSM363427
[453]
GSM363428
[454]
GSM363429
[455]
GSM363430
[456]
GSM363431
[457]
GSM363432
[458]
GSM363433
[459]
GSM363434
[460]
GSM363435
[461]
GSM363436
[462]
GSM363437
[463]
GSM363438
[464]
GSM363439
[465]
GSM363440
[466]
GSM363441
[467]
GSM363442
[468]
GSM363443
[469]
GSM363444
[470]
GSM363445
[471]
GSM363446
[472]
GSM363447
[473]
GSM363448
[474]
GSM363449
[475]
GSM363450
[476]
GSM363451
[477]
GSM712532
[478]
GSM712533
[479]
GSM712534
[480]
GSM712535
[481]
GSM712536
[482]
GSM712537
[483]
GSM712538
[484]
GSM712539
[485]
GSM712540
[486]
GSM712541
[487]
GSM712542
sample_count
488
group_sizes
null
group_sizes_basis
null
platform
3921;571
taxon
Homo sapiens
title
Gene expression data of human hepatocellular carcinoma (HCC)
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[4] object · 15 fields
id
data:geo:GSE17112
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE17112
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE17112
version
null
note
The original contributions presented in the study are included in the article/Supplementary Material; further inquiries can be directed to the corresponding author/s.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The original contributions presented in the study are included in the article/Supplementary Material; further inquiries can be directed to the corresponding author/s.
access_statement_kind
data_availability_statement
sample_accessions array · 8 items
[0]
GSM428024
[1]
GSM428025
[2]
GSM428026
[3]
GSM428027
[4]
GSM428028
[5]
GSM428029
[6]
GSM428030
[7]
GSM428031
sample_count
8
group_sizes
null
group_sizes_basis
null
platform
1261
taxon
Mus musculus
title
Visualization of cancer initiating cell in the vascular niche utilized with transcriptional activity of PSF1
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[5] object · 16 fields
id
asset:table:pmid:34414190:1
role
table
format
jats-table
media_type
application/vnd.jats.table+json
uri
null
sha256
sha256:fc266c9300bb764ed464b911fa09f375352fc8f96aa85128fa6b80af71a31a32
bytes
826
access
open
state
verified
reader
read_table
reader_status
available
identifier
section[6]/table-wrap[1]#T1
version
null
note
Primers used for RT-qPCR.
structure object · 5 fields
pmcid
PMC8369484
section_index
6
section_title
RNA Isolation and Quantitative Real-Time PCR
row_count
9
column_count
3
table object · 8 fields
label
TABLE 1
caption
Primers used for RT-qPCR.
rows array · 9 items
[0] array · 3 items
[0]
Primer name
[1]
Forward primers
[2]
Reverse primers
[1] array · 3 items
[0]
BMI1
[1]
5′-ATGAGGAGGAACCTTTAAA GGA-3′
[2]
5′-GAAGTGGACCATTCCTTCTC-3′
[2] array · 3 items
[0]
GAPDH
[1]
5′-AATCCCATCACCATCTTCC-3′
[2]
5′-CATCACGCCACAGTTTCC-3′
[3] array · 3 items
[0]
GINS1
[1]
5′-AAAGTCAGGTGGACGAAG-3′
[2]
5′-CATTTGGCAAGACGCTAC-3′
[4] array · 3 items
[0]
HRAS
[1]
5′-CGGAATATAAGCTGGTGGTG-3′
[2]
5′-GGTAGGAATCCTCTATAG TGGG-3′
[5] array · 3 items
[0]
KLF4
[1]
5′-CCCACACTTGTGATTACGC-3′
[2]
5′-GGTAAGGTTTCTCACCTGTG-3′
[6] array · 3 items
[0]
LIF
[1]
5′-AGTGCCAATGCCCTCTTTAT-3′
[2]
5′-ACACGACTATGCGGTACAGC-3′
[7] array · 3 items
[0]
SKP2
[1]
5′-TATGCACAGGAAGCACCTC-3′
[2]
5′-TCTTGCTGGAATCCCATCC-3′
[8] array · 3 items
[0]
SOX2
[1]
5′-CGGATTATAAATACCGGCCC-3′
[2]
5′-GTGTACTTATCCTTCTTCATG AGC-3′
locator
section[6]/table-wrap[1]#T1
gaps array · 8 items
[0]
asset:data:geo:GSE140202 not downloaded
[1]
asset:data:geo:GSE140202 licence not read
[2]
asset:data:geo:GSE143233 not downloaded
[3]
asset:data:geo:GSE143233 licence not read
[4]
asset:data:geo:GSE14520 not downloaded
[5]
asset:data:geo:GSE14520 licence not read
[6]
asset:data:geo:GSE17112 not downloaded
[7]
asset:data:geo:GSE17112 licence not read
analysis object · 4 fields
state
partial
methods array · 2 items
[0] object · 10 fields
id
method-1
family
survival_analysis
specific
log_rank_test
label
Survival analysis
dsl_operations array · 1 item
[0]
logrank_test
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
time_to_event_with_censoring
evidence object · 3 fields
score
1
band
verbatim
quote
Overall survival curves were plotted according to the Kaplan–Meier method and the generalized log-rank test was applied to analyze the survival curves.
[1] object · 10 fields
id
method-2
family
group_comparison
specific
mann_whitney
label
Group comparison
dsl_operations array · 0 items
missing_operations array · 1 item
[0]
group_comparison_mann_whitney
expressible
false
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
0.8
band
high
quote
Mann Whitney
targets array · 0 items
gaps array · 1 item
[0]
method.reader_differs_from_extractor
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
true
required_operations array · 1 item
[0]
logrank_test
missing_operations array · 0 items
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: log_rank_test.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 4 items
[0]
GSE14520
[1]
GSE17112
[2]
GSE143233
[3]
GSE140202
resolved_accessions array · 4 items
[0]
GSE14520
[1]
GSE17112
[2]
GSE143233
[3]
GSE140202
statements array · 1 item
[0]
The original contributions presented in the study are included in the article/Supplementary Material; further inquiries can be directed to the corresponding author/s.
basis
The paper names GSE14520, GSE17112, GSE143233, GSE140202 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 1 item
[0]
logrank_test
assets array · 3 items
[0]
source:pmid:34414190
[1]
data:geo:GSE140202
[2]
asset:table:pmid:34414190:1
steps array · 1 item
[0]
run_analysis
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE140202
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-10-31T18:33:45Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
3
usage object · 3 fields
prompt_tokens
25498
completion_tokens
2499
cached_tokens
768
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:34414190
type
paper
label
pmid:34414190
[1] object · 3 fields
id
source:pmid:34414190
type
manuscript
label
PMID 34414190 full text
[2] object · 3 fields
id
data:geo:GSE140202
type
dataset
label
GEO GSE140202
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:34414190
type
paper
label
pmid:34414190
[1] object · 3 fields
id
source:pmid:34414190
type
manuscript
label
PMID 34414190 full text
[2] object · 3 fields
id
data:geo:GSE140202
type
dataset
label
GEO GSE140202
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-34414190
type
extraction
used array · 1 item
[0]
source:pmid:34414190
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE140202
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE140202
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:34414190
parent_hash
sha256:d114f05d85ebef56e01bb53dd532488c38143a6c05fe278e58715617ff8105ad
fork_of
null
gaps array · 13 items
[0]
asset:data:geo:GSE140202 licence not read
[1]
asset:data:geo:GSE140202 not downloaded
[2]
asset:data:geo:GSE143233 licence not read
[3]
asset:data:geo:GSE143233 not downloaded
[4]
asset:data:geo:GSE14520 licence not read
[5]
asset:data:geo:GSE14520 not downloaded
[6]
asset:data:geo:GSE17112 licence not read
[7]
asset:data:geo:GSE17112 not downloaded
[8]
execution.not_run
[9]
method.reader_differs_from_extractor
[10]
review.human_critique
[11]
review.independent_reader
[12]
review.machine_critique
assays array · 5 items
[0] object · 11 fields
role
data_generation
definition_id
animal_model
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.99
evidence array · 4 items
[0]
ll proliferation assay and in vivo xenograft mouse model indicated that knocking down GINS1 induced i
[1]
on. Cell cycle, cell proliferation assay and in vivo xenograft mouse model indicated that knockin
[2]
eased tumor cells proliferation in vitro and in vivo. Spheroid formation assay results showed tha
[3]
ll proliferation assay and in vivo xenograft mouse model indicated that knocking down GINS1 ind
order_basis
paper_text_order:657
id
assay:1
[1] object · 11 fields
role
data_generation
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.93
evidence array · 1 item
[0]
igh-expressed cancer cells, and quantitative real-time PCR, and Western blot results proved that GINS1
order_basis
paper_text_order:1077
id
assay:2
[2] object · 11 fields
role
data_generation
definition_id
western_blot
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.93
evidence array · 1 item
[0]
r cells, and quantitative real-time PCR, and Western blot results proved that GINS1 enhanced HCC progr
order_basis
paper_text_order:1096
id
assay:3
[3] object · 11 fields
role
data_generation
definition_id
cell_culture
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.77
evidence array · 1 item
[0]
and Reagents Human liver cancer cell lines, HepG2, PLC, and HepB3 were obtained from American
order_basis
paper_text_order:1652
id
assay:4
[4] object · 11 fields
role
analysis
definition_id
survival_analysis
definition_version
f2132e96ae6c7a4e
required_operations array · 1 item
[0]
logrank_test
support_state
supported
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
Overall survival curves were plotted according to the Kaplan–Meier method and the generalized log-rank test was applied to analyze the survival curves.
order_basis
consumes_earlier_output
id
assay:5
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:34414190", "kind": "science-record", "revision": 7, "content_hash": "sha256:f3e30b973a7c15d511a133eb51834c9da87d67b8addd157e0072299f1b456d85", "created_at": "2026-11-01T15:41:48Z", "updated_at": "2026-11-01T22:04:30Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "GINS1 Induced Sorafenib Resistance by Promoting Cancer Stem Properties in Human Hepatocellular Cancer Cells.", "doi": "10.3389/fcell.2021.711894", "pmid": "34414190", "authors": ["Sheng Li", "Lina Wu", "Hong Zhang", "Xijuan Liu", "Zilei Wang", "Bin Dong", "Guang Cao"], "journal": "Frontiers in cell and developmental biology", "year": 2021, "abstract": "Hepatocellular carcinoma (HCC) is characterized by a high rate of incidence and recurrence, and resistance to chemotherapy may aggravate the poor prognosis of HCC patients. Sorafenib resistance is a conundrum to the treatment of advanced/recurrent HCC. Therefore, studies on the molecular pathogenesis of HCC and the resistance to sorafenib are of great interest. Here, we report that GINS1 was highly expressed in HCC tumors, associated with tumor grades, and predicted poor patient survival using Gene Expression Omnibus (GEO) databases exploration. Cell cycle, cell proliferation assay and in vivo xenograft mouse model indicated that knocking down GINS1 induced in G1/S phase cell cycle arrest and decreased tumor cells proliferation in vitro and in vivo. Spheroid formation assay results showed that GINS1 promoted the stem cell activity of HCC tumor cells. Furthermore, GEO database (GSE17112) analysis showed that HRAS oncogenic gene set was enriched in GINS1 high-expressed cancer cells, and quantitative real-time PCR, and Western blot results proved that GINS1 enhanced HCC progression through regulating HRAS signaling pathway. Moreover, knocking down endogenous GINS1 with shGINS1 increased the sensitivity of HCC cells to sorafenib, and restoring HRAS or stem associated pathway partly recovered the sorafenib resistance. Overall, the collective findings highlight GINS1 functions in hepatocarcinogenesis and sorafenib resistance, and indicate its potential use of GINS1 in drug-resistant HCC.", "claims": [{"id": "claim-method", "statement": "Overall survival curves were plotted according to the Kaplan–Meier method and the generalized log-rank test was applied to analyze the survival curves.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:34414190", "locator": "sections[13] \"Statistical Analysis\" paragraph 2", "quote": "Overall survival curves were plotted according to the Kaplan–Meier method and the generalized log-rank test was applied to analyze the survival curves."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The original contributions presented in the study are included in the article/Supplementary Material; further inquiries can be directed to the corresponding author/s.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:34414190", "locator": "sections[21] \"Data Availability Statement\" paragraph 2", "quote": "The original contributions presented in the study are included in the article/Supplementary Material; further inquiries can be directed to the corresponding author/s."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": null, "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:34414190"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. 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