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pmid:34445425

Proteomics of Mouse Heart Ventricles Reveals Mitochondria and Metabolism as Major Targets of a Post-Infarction Short-Acting GLP1Ra-Therapy.

Juliana de Freitas Germano · Ankush Sharma · Miroslava Stastna · Chengqun Huang · Marianne Aniag · Angie Aceves · Jennifer E Van Eyk · Robert M Mentzer · Honit Piplani · Allen M Andres · Roberta A Gottlieb

International journal of molecular sciences · 2021 doi:10.3390/ijms22168711

Paper

complete

Experiment

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Data

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Analysis

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Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
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pmid:34445425
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science-record
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created_at
2026-11-01T15:41:50Z
updated_at
2026-11-01T22:04:35Z
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paper object · 10 fields
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title
Proteomics of Mouse Heart Ventricles Reveals Mitochondria and Metabolism as Major Targets of a Post-Infarction Short-Acting GLP1Ra-Therapy.
doi
10.3390/ijms22168711
pmid
34445425
authors array · 11 items
[0]
Juliana de Freitas Germano
[1]
Ankush Sharma
[2]
Miroslava Stastna
[3]
Chengqun Huang
[4]
Marianne Aniag
[5]
Angie Aceves
[6]
Jennifer E Van Eyk
[7]
Robert M Mentzer
[8]
Honit Piplani
[9]
Allen M Andres
[10]
Roberta A Gottlieb
journal
International journal of molecular sciences
year
2021
abstract
Cardiovascular disease is the main cause of death worldwide, making it crucial to search for new therapies to mitigate major adverse cardiac events (MACEs) after a cardiac ischemic episode. Drugs in the class of the glucagon-like peptide-1 receptor agonists (GLP1Ra) have demonstrated benefits for heart function and reduced the incidence of MACE in patients with diabetes. Previously, we demonstrated that a short-acting GLP1Ra known as DMB (2-quinoxalinamine, 6,7-dichloro-N-[1,1-dimethylethyl]-3-[methylsulfonyl]-,6,7-dichloro-2-methylsulfonyl-3-N-tert-butylaminoquinoxaline or compound 2, Sigma) also mitigates adverse postinfarction left ventricular remodeling and cardiac dysfunction in lean mice through activation of parkin-mediated mitophagy following infarction. Here, we combined proteomics with in silico analysis to characterize the range of effects of DMB in vivo throughout the course of early postinfarction remodeling. We demonstrate that the mitochondrion is a key target of DMB and mitochondrial respiration, oxidative phosphorylation and metabolic processes such as glycolysis and fatty acid beta-oxidation are the main biological processes being regulated by this compound in the heart. Moreover, the overexpression of proteins with hub properties identified by protein-protein interaction networks, such as Atp2a2, may also be important to the mechanism of action of DMB. Data are available via ProteomeXchange with identifier PXD027867.
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The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD027867 and 10.6019/PXD027867.
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sections[19] "Data Availability Statement" paragraph 2
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The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD027867 and 10.6019/PXD027867.
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Unique canonical pathways with predicted z-scores throughout the course of remodeling.
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PMC8395861
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2.2. Oxidative Phosphorylation and Multiple Cellular Metabolic Pathways Are Regulated in the First Week of Post-Infarction Remodeling
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Table 1
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Unique canonical pathways with predicted z-scores throughout the course of remodeling.
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z-Score
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TCA Cycle II (Eukaryotic)
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Estrogen Receptor Signaling
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[1]
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GP6 Signaling Pathway
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[1]
[2]
[3]
Production of Nitric Oxide and Reactive Oxygen Species in Macrophages
[4]
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[1]
[2]
[3]
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RhoGDI Signaling
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[3]
Signaling by Rho Family GTPases
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[2]
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[4]
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[1]
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BAG2 Signaling Pathway
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Cardiac Hypertrophy Signaling
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Cdc42 Signaling
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[3]
ERK/MAPK Signaling
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[3]
Estrogen Receptor Signaling
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[1]
[2]
[3]
Gluconeogenesis I
[4]
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[1]
[2]
[3]
Hepatic Fibrosis Signaling Pathway
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[0]
[1]
[2]
[3]
HER-2 Signaling in Breast Cancer
[4]
2.000
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[0]
[1]
[2]
[3]
Insulin Secretion Signaling Pathway
[4]
−0.447
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[0]
[1]
[2]
[3]
Integrin Signaling
[4]
1.134
[26] array · 5 items
[0]
[1]
[2]
[3]
NAD Signaling Pathway
[4]
−2.449
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[1]
[2]
[3]
Necroptosis Signaling Pathway
[4]
−2.000
[28] array · 5 items
[0]
[1]
[2]
[3]
Nitric Oxide Signaling in the Cardiovascular System
[4]
1.000
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[1]
[2]
[3]
PI3K/AKT Signaling
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[30] array · 5 items
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[1]
[2]
[3]
PPARα/RXRα Activation
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[2]
[3]
Production of Nitric Oxide and Reactive Oxygen Species in Macrophages
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[2]
[3]
Regulation of Actin-based Motility by Rho
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[1]
[2]
[3]
RhoGDI Signaling
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1.342
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[2]
[3]
Role of PKR in Interferon Induction and Antiviral Response
[4]
−1.342
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[2]
[3]
Semaphorin Neuronal Repulsive Signaling Pathway
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−2.236
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[1]
[2]
[3]
Senescence Pathway
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−1.633
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[0]
[1]
[2]
[3]
Signaling by Rho Family GTPases
[4]
−0.447
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[0]
[1]
[2]
[3]
Superpathway of Methionine Degradation
[4]
−2.236
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[0]
[1]
[2]
[3]
TCA Cycle II (Eukaryotic)
[4]
−3.317
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[1]
[2]
[3]
Unfolded protein response
[4]
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[2]
[3]
Isoleucine Degradation I
[4]
−2.000
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[3]
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BAG2 Signaling Pathway
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[3]
Complement System
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[0]
[1]
Breast Cancer Regulation by Stathmin1
[2]
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[3]
Gluconeogenesis I
[4]
1.342
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[1]
Cardiac Hypertrophy Signaling
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1.000
[3]
Glutaryl-CoA Degradation
[4]
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[1]
Cardiac Hypertrophy Signaling (Enhanced)
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[3]
Glycolysis I
[4]
2.000
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[1]
Coagulation System
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Hepatic Fibrosis Signaling Pathway
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[0]
[1]
Coronavirus Pathogenesis Pathway
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−2.000
[3]
ILK Signaling
[4]
1.732
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[0]
[1]
Death Receptor Signaling
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2.000
[3]
Inhibition of ARE-Mediated mRNA Degradation Pathway
[4]
2.236
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[1]
Endocannabinoid Neuronal Synapse Pathway
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1.000
[3]
Intrinsic Prothrombin Activation Pathway
[4]
−0.447
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[0]
[1]
Fcγ Receptor-mediated Phagocytosis in Macrophages and Monocytes
[2]
2.000
[3]
Isoleucine Degradation I
[4]
−2.236
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[0]
[1]
HIF1α Signaling
[2]
1.000
[3]
Ketogenesis
[4]
−1.342
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[0]
[1]
Leukocyte Extravasation Signaling
[2]
2.000
[3]
Ketolysis
[4]
−1.000
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[0]
[1]
Necroptosis Signaling Pathway
[2]
0.816
[3]
MSP-RON Signaling in Cancer Cells Pathway
[4]
2.236
[56] array · 5 items
[0]
[1]
Opioid Signaling Pathway
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1.000
[3]
Necroptosis Signaling Pathway
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[0]
[1]
PPARα/RXRα Activation
[2]
−2.121
[3]
Senescence Pathway
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−1.000
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RhoA Signaling
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[3]
Tryptophan Degradation III (Eukaryotic)
[4]
−2.236
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[1]
RhoGDI Signaling
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[3]
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[4]
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[1]
Role of NFAT in Cardiac Hypertrophy
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[3]
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[1]
Signaling by Rho Family GTPases
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2.449
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Unfolded protein response
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2.000
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Xenobiotic Metabolism CAR Signaling Pathway
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1.000
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[4]
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[1]
Xenobiotic Metabolism PXR Signaling Pathway
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−1.633
[3]
[4]
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List of unique proteins identified in each group in the cross-comparative analysis.
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PMC8395861
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2.3. Cross-Comparative Analysis Identifies Mitochondrial Compartments as the Main Cellular Components of DEPs
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Table 2
caption
List of unique proteins identified in each group in the cross-comparative analysis.
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[0]
Vehicle
[1]
DMB
[1] array · 6 items
[0]
Day 1
[1]
Day 3
[2]
Day 7
[3]
Day 1
[4]
Day 3
[5]
Day 7
[2] array · 6 items
[0]
COFA1, COX8B, CTNB1, DCTN2, DUS3, EIF3B, EZRI, FAHD2, HNRPF, IMB1, KCC2D, KINH, LACE1, MARE2, MGDP1, MIC26, NDUC2, PDC6I, PSA7, RAN, RMD1, RS5, SAM50, SEPT2, STX3, TALDO, UBE2N, UBP5, 6PGD, APOC1, ARF4, C4BPA, CFAB, CHIL3, CMC2, CO4B, CRIP1, EGFR, FETUB, GPX41, HRG, ICAL, ITIH3, KLH41, LMOD2, LUM, MYH11, NEDD4, PRS10, PRS6A, RD23B, RS20, RS3, SYDC, TCPH, THTR, TOM1, UN45B, AN32A, CBR1, DHDH, FAHD1, GLRX1, HDHD2, HOT, NUCG, OXND1, PGS2, PIMT, PSA3, SIR5, SPEG, VP26A, CBR4, CLPP, DDX5, GPD1L, KV5AA, LGUL, MAOX, MIME, PYC, VPS29
[1]
CLPP, COX2, NP1L1, TSP1, CX7A2, XDH, FXR1, FBLI1
[2]
NUCG, GLRX3, AKAP9, CAND1, G3BP1, PRELP, VATG1, MYL4, MPPB
[3]
MLRA, MSRB2, PGFS, PSA6, NQO2, LYZ2
[4]
PDK4, LGMN, PMGE, RADI, CX6A1, COX8B, VATA, MTPN, RS3, TCPE, IC1, PSME2, PSMD1, PCBP2, SAM50, UN45B, DDX1, CPT1B, PLST, NAMPT, CAP2, IPYR, MECR, PFKAP, PSD13
[5]
ITIH3, CLPP, YBOX3, TAU, ARC1B, EIF3A, FBN1, NDUB1, PRS8, SYRC, PDK4
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Protein–protein interaction network parameters.
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PMC8395861
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2.5. Protein–Protein Interaction Networks Reveal Dynamic Changes in Protein Expression in Early Remodeling
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Table 3
caption
Protein–protein interaction network parameters.
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[0] array · 5 items
[0]
Day
[1]
Total Number of Nodes (Seed + Interacting Partners)
[2]
Number of Interactions
[3]
Unique Proteins and DEPs in Network (Seed Proteins)
[4]
High-Degree Proteins(Unique for That Day)
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[0]
Day 1
[1]
198
[2]
612
[3]
43
[4]
Fancd2
[2] array · 1 item
[0]
Atp2a2
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[0]
Eed
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[0]
Day 3
[1]
768
[2]
3314
[3]
81
[4]
Fxr1
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[0]
Fancd2
[6] array · 1 item
[0]
Actb
[7] array · 5 items
[0]
Day 7
[1]
922
[2]
4317
[3]
39
[4]
Mapt
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[0]
Actb
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[0]
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protein-protein interaction
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candidate
Automated Assays Laravel application and simulated adapters
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Proteomics of Mouse Heart Ventricles Reveals Mitochondria and Me
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to characterize the range of effects of DMB in vivo throughout the course of early postinfarctio
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Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:34445425", "kind": "science-record", "revision": 7, "content_hash": "sha256:4fc99191e44691dccd461eea386d5fc2499452367ea2df2cf2637a7e1744be70", "created_at": "2026-11-01T15:41:50Z", "updated_at": "2026-11-01T22:04:35Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Proteomics of Mouse Heart Ventricles Reveals Mitochondria and Metabolism as Major Targets of a Post-Infarction Short-Acting GLP1Ra-Therapy.", "doi": "10.3390/ijms22168711", "pmid": "34445425", "authors": ["Juliana de Freitas Germano", "Ankush Sharma", "Miroslava Stastna", "Chengqun Huang", "Marianne Aniag", "Angie Aceves", "Jennifer E Van Eyk", "Robert M Mentzer", "Honit Piplani", "Allen M Andres", "Roberta A Gottlieb"], "journal": "International journal of molecular sciences", "year": 2021, "abstract": "Cardiovascular disease is the main cause of death worldwide, making it crucial to search for new therapies to mitigate major adverse cardiac events (MACEs) after a cardiac ischemic episode. Drugs in the class of the glucagon-like peptide-1 receptor agonists (GLP1Ra) have demonstrated benefits for heart function and reduced the incidence of MACE in patients with diabetes. Previously, we demonstrated that a short-acting GLP1Ra known as DMB (2-quinoxalinamine, 6,7-dichloro-N-[1,1-dimethylethyl]-3-[methylsulfonyl]-,6,7-dichloro-2-methylsulfonyl-3-N-tert-butylaminoquinoxaline or compound 2, Sigma) also mitigates adverse postinfarction left ventricular remodeling and cardiac dysfunction in lean mice through activation of parkin-mediated mitophagy following infarction. Here, we combined proteomics with in silico analysis to characterize the range of effects of DMB in vivo throughout the course of early postinfarction remodeling. We demonstrate that the mitochondrion is a key target of DMB and mitochondrial respiration, oxidative phosphorylation and metabolic processes such as glycolysis and fatty acid beta-oxidation are the main biological processes being regulated by this compound in the heart. Moreover, the overexpression of proteins with hub properties identified by protein-protein interaction networks, such as Atp2a2, may also be important to the mechanism of action of DMB. 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