Corpus Engine Towards a reproducible .science file.
← All .science files

pmid:34474677

CXCL2-mediated ATR/CHK1 signaling pathway and platinum resistance in epithelial ovarian cancer.

Sipei Nie · Yicong Wan · Hui Wang · Jinhui Liu · Jing Yang · Rui Sun · Huangyang Meng · Xiaolin Ma · Yi Jiang · Wenjun Cheng

Journal of ovarian research · 2021 doi:10.1186/s13048-021-00864-3

Paper

complete

Experiment

partial

Data

partial

Analysis

partial

Execution

absent

Execution evidence has not yet been added to this .science file. Explore its methods, data and open questions to plan the next step.
Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
id
pmid:34474677
kind
science-record
content_hash
sha256:12368f648e295347c2bc6df65a95e133503c888ae216892f226e988f77239f81
schema
https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json
created_at
2026-11-01T15:41:50Z
updated_at
2026-11-01T22:04:38Z
generator object · 2 fields
name
corpus-assay-engine
run_id
reading-sci-2026-11-01
paper object · 10 fields
state
complete
title
CXCL2-mediated ATR/CHK1 signaling pathway and platinum resistance in epithelial ovarian cancer.
doi
10.1186/s13048-021-00864-3
pmid
34474677
authors array · 10 items
[0]
Sipei Nie
[1]
Yicong Wan
[2]
Hui Wang
[3]
Jinhui Liu
[4]
Jing Yang
[5]
Rui Sun
[6]
Huangyang Meng
[7]
Xiaolin Ma
[8]
Yi Jiang
[9]
Wenjun Cheng
journal
Journal of ovarian research
year
2021
abstract
Tumor microenvironment and chemokines play a significant role in cancer chemoresistance. This study was designed to reveal the important role of CXCL2 in platinum resistance in epithelial ovarian cancer (EOC). Differently expressed (DE) genes were screen out based on analysis of GSE114206 dataset in GEO database. The expression of DE chemokines was further validated in platinum- resistant and sensitive EOC. Cell viability assay and cell apoptosis assay were performed to explore the roles of CXCL2 in EOC. Cell stemness characteristics and the signaling pathway regulated by CXCL2 were also investigated in this study. As the results showed, CXCL2 was identified up-regulated in platinum-resistant EOC. The functional assays showed overexpressing CXCL2 or co-culturing with recombinant human CXCL2 promoted cell resistance to cisplatin. Conversely, knocking down CXCL2 or co-culturing with neutralizing antibody to CXCL2 increased cell response to cisplatin. CXCL2 overexpressing maintained cell stemness and activated ATR/CHK1 signaling pathway in EOC. Moreover, we further demonstrated that CXCL2-mediated resistance to cisplatin could be saved by SB225002, the inhibitor of CXCL2 receptor, as well as be rescued by SAR-020106, the inhibitor of ATR/CHK1 signaling pathway. This study identified a CXCL2-mediated mechanism in EOC platinum resistance. Our findings provided a novel target for chemoresistance prevention in EOC.
claims array · 2 items
[0] object · 6 fields
id
claim-method
statement
A standard Student's t-test determined the statistical significance of differences between the two groups.
kind
methodological
target
null
evidence array · 1 item
[0] object · 3 fields
asset
source:pmid:34474677
locator
sections[12] "Statistical analysis" paragraph 2
quote
A standard Student's t-test determined the statistical significance of differences between the two groups.
state
complete
[1] object · 6 fields
id
claim-data-access
statement
They could be achieved upon reasonable request to the authors.
kind
methodological
target
null
evidence array · 1 item
[0] object · 3 fields
asset
source:pmid:34474677
locator
sections[27] "Availability of data and materials" paragraph 2
quote
They could be achieved upon reasonable request to the authors.
state
complete
gaps array · 0 items
experiment object · 8 fields
state
partial
objective
null
steps array · 3 items
[0] object · 13 fields
id
read_published_estimate
order
1
name
Read the published estimate from the source
kind
other
state
complete
blocked_on
null
description
The claim, method and evidence span published with the source article.
parameters object · 0 fields
inputs array · 1 item
[0]
source:pmid:34474677
outputs array · 1 item
[0]
the published estimate and its evidence
instruments array · 0 items
reagents array · 0 items
[1] object · 13 fields
id
obtain_source_data
order
2
name
Obtain the source data from the named repository
kind
data-preparation
state
complete
blocked_on
null
description
The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.
parameters object · 0 fields
inputs array · 1 item
[0]
data:geo:GSE114206
outputs array · 1 item
[0]
the source data with its repository provenance
instruments array · 0 items
reagents array · 0 items
[2] object · 13 fields
id
run_analysis
order
3
name
Run the published analysis
kind
analysis
state
blocked
blocked_on
method:student_t
description
Apply the paper's statistical method to the resolved series and compare the result with the published target.
parameters object · 0 fields
inputs array · 1 item
[0]
data:geo:GSE114206
outputs array · 1 item
[0]
the replicated result and its comparison
instruments array · 0 items
reagents array · 0 items
materials array · 0 items
instruments array · 0 items
reagents array · 0 items
conditions object · 0 fields
gaps array · 1 item
[0]
step:run_analysis blocked on method:student_t
data object · 3 fields
state
partial
assets array · 2 items
[0] object · 15 fields
id
source:pmid:34474677
role
manuscript
format
xml
media_type
application/xml
uri
https://doi.org/10.1186/s13048-021-00864-3
sha256
sha256:d55ae6873f13c6e9c0654802a7de8ebe8d9321e51de08346cacbb52aa005c284
bytes
35363
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
10.1186/s13048-021-00864-3
version
null
note
Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.
structure object · 4 fields
pmcid
PMC8414676
source
europe_pmc_fulltext
coverage
whole_body
text_hash_scope
rendered_section_body
[1] object · 15 fields
id
data:geo:GSE114206
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114206
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE114206
version
null
note
They could be achieved upon reasonable request to the authors.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
They could be achieved upon reasonable request to the authors.
access_statement_kind
data_availability_statement
sample_accessions array · 12 items
[0]
GSM3137791
[1]
GSM3137792
[2]
GSM3137793
[3]
GSM3137794
[4]
GSM3137795
[5]
GSM3137796
[6]
GSM3137797
[7]
GSM3137798
[8]
GSM3137799
[9]
GSM3137800
[10]
GSM3137801
[11]
GSM3137802
sample_count
12
group_sizes
null
group_sizes_basis
null
platform
13497
taxon
Homo sapiens
title
Expression analysis of platinum sensitive and resistant epithelial ovarian cancer patient samples.
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
gaps array · 2 items
[0]
asset:data:geo:GSE114206 not downloaded
[1]
asset:data:geo:GSE114206 licence not read
analysis object · 4 fields
state
partial
methods array · 1 item
[0] object · 10 fields
id
method-1
family
group_comparison
specific
student_t_test
label
Group comparison
dsl_operations array · 0 items
missing_operations array · 1 item
[0]
student_t
expressible
false
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
1
band
verbatim
quote
A standard Student's t-test determined the statistical significance of differences between the two groups.
targets array · 0 items
gaps array · 1 item
[0]
method.student_t
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
false
required_operations array · 0 items
missing_operations array · 1 item
[0]
student_t
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: student_t_test.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 1 item
[0]
GSE114206
resolved_accessions array · 1 item
[0]
GSE114206
statements array · 1 item
[0]
They could be achieved upon reasonable request to the authors.
basis
The paper names GSE114206 in GEO database and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 0 items
assets array · 2 items
[0]
source:pmid:34474677
[1]
data:geo:GSE114206
steps array · 0 items
must_build object · 5 fields
dsl_operations array · 1 item
[0] object · 3 fields
operation
student_t
priority
null
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE114206
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-10-31T18:34:15Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
3
usage object · 3 fields
prompt_tokens
29496
completion_tokens
942
cached_tokens
784
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:34474677
type
paper
label
pmid:34474677
[1] object · 3 fields
id
source:pmid:34474677
type
manuscript
label
PMID 34474677 full text
[2] object · 3 fields
id
data:geo:GSE114206
type
dataset
label
GEO GSE114206
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:34474677
type
paper
label
pmid:34474677
[1] object · 3 fields
id
source:pmid:34474677
type
manuscript
label
PMID 34474677 full text
[2] object · 3 fields
id
data:geo:GSE114206
type
dataset
label
GEO GSE114206
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-34474677
type
extraction
used array · 1 item
[0]
source:pmid:34474677
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE114206
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE114206
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:34474677
parent_hash
sha256:0bed4c97c2171bd1bfad1b7749a206cf7e2a79bf61192907cda03a31b4a8f679
fork_of
null
gaps array · 8 items
[0]
asset:data:geo:GSE114206 licence not read
[1]
asset:data:geo:GSE114206 not downloaded
[2]
execution.not_run
[3]
method.student_t
[4]
review.human_critique
[5]
review.independent_reader
[6]
review.machine_critique
[7]
step:run_analysis blocked on method:student_t
assays array · 2 items
[0] object · 11 fields
role
data_generation
definition_id
apoptosis_assay
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.99
evidence array · 2 items
[0]
sensitive EOC. Cell viability assay and cell apoptosis assay were performed to explore the roles of
[1]
platinum- resistant and sensitive EOC. Cell viability assay and cell apoptosis assay were performed to e
order_basis
paper_text_order:468
id
assay:1
[1] object · 11 fields
role
analysis
definition_id
group_comparison
definition_version
f2132e96ae6c7a4e
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
A standard Student's t-test determined the statistical significance of differences between the two groups.
order_basis
consumes_earlier_output
id
assay:2
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:34474677", "kind": "science-record", "revision": 7, "content_hash": "sha256:12368f648e295347c2bc6df65a95e133503c888ae216892f226e988f77239f81", "created_at": "2026-11-01T15:41:50Z", "updated_at": "2026-11-01T22:04:38Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "CXCL2-mediated ATR/CHK1 signaling pathway and platinum resistance in epithelial ovarian cancer.", "doi": "10.1186/s13048-021-00864-3", "pmid": "34474677", "authors": ["Sipei Nie", "Yicong Wan", "Hui Wang", "Jinhui Liu", "Jing Yang", "Rui Sun", "Huangyang Meng", "Xiaolin Ma", "Yi Jiang", "Wenjun Cheng"], "journal": "Journal of ovarian research", "year": 2021, "abstract": "Tumor microenvironment and chemokines play a significant role in cancer chemoresistance. This study was designed to reveal the important role of CXCL2 in platinum resistance in epithelial ovarian cancer (EOC). Differently expressed (DE) genes were screen out based on analysis of GSE114206 dataset in GEO database. The expression of DE chemokines was further validated in platinum- resistant and sensitive EOC. Cell viability assay and cell apoptosis assay were performed to explore the roles of CXCL2 in EOC. Cell stemness characteristics and the signaling pathway regulated by CXCL2 were also investigated in this study. As the results showed, CXCL2 was identified up-regulated in platinum-resistant EOC. The functional assays showed overexpressing CXCL2 or co-culturing with recombinant human CXCL2 promoted cell resistance to cisplatin. Conversely, knocking down CXCL2 or co-culturing with neutralizing antibody to CXCL2 increased cell response to cisplatin. CXCL2 overexpressing maintained cell stemness and activated ATR/CHK1 signaling pathway in EOC. Moreover, we further demonstrated that CXCL2-mediated resistance to cisplatin could be saved by SB225002, the inhibitor of CXCL2 receptor, as well as be rescued by SAR-020106, the inhibitor of ATR/CHK1 signaling pathway. This study identified a CXCL2-mediated mechanism in EOC platinum resistance. Our findings provided a novel target for chemoresistance prevention in EOC.", "claims": [{"id": "claim-method", "statement": "A standard Student's t-test determined the statistical significance of differences between the two groups.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:34474677", "locator": "sections[12] \"Statistical analysis\" paragraph 2", "quote": "A standard Student's t-test determined the statistical significance of differences between the two groups."}], "state": "complete"}, {"id": "claim-data-access", "statement": "They could be achieved upon reasonable request to the authors.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:34474677", "locator": "sections[27] \"Availability of data and materials\" paragraph 2", "quote": "They could be achieved upon reasonable request to the authors."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "partial", "objective": null, "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:34474677"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE114206"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "blocked", "blocked_on": "method:student_t", "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE114206"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": ["step:run_analysis blocked on method:student_t"]}, "data": {"state": "partial", "assets": [{"id": "source:pmid:34474677", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1186/s13048-021-00864-3", "sha256": "sha256:d55ae6873f13c6e9c0654802a7de8ebe8d9321e51de08346cacbb52aa005c284", "bytes": 35363, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.1186/s13048-021-00864-3", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC8414676", "source": "europe_pmc_fulltext", "coverage": "whole_body", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:GSE114206", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114206", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE114206", "version": null, "note": "They could be achieved upon reasonable request to the authors.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "They could be achieved upon reasonable request to the authors.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM3137791", "GSM3137792", "GSM3137793", "GSM3137794", "GSM3137795", "GSM3137796", "GSM3137797", "GSM3137798", "GSM3137799", "GSM3137800", "GSM3137801", "GSM3137802"], "sample_count": 12, "group_sizes": null, "group_sizes_basis": null, "platform": "13497", "taxon": "Homo sapiens", "title": "Expression analysis of platinum sensitive and resistant epithelial ovarian cancer patient samples.", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}], "gaps": ["asset:data:geo:GSE114206 not downloaded", "asset:data:geo:GSE114206 licence not read"]}, "analysis": {"state": "partial", "methods": [{"id": "method-1", "family": "group_comparison", "specific": "student_t_test", "label": "Group comparison", "dsl_operations": [], "missing_operations": ["student_t"], "expressible": false, "parameters": {}, "data_shapes": ["two_or_more_groups_continuous"], "evidence": {"score": 1.0, "band": "verbatim", "quote": "A standard Student's t-test determined the statistical significance of differences between the two groups."}}], "targets": [], "gaps": ["method.student_t"]}, "capability": {"state": "complete", "requirements": [{"capability_id": "capability:computational_analysis", "label": "Computational analysis platform", "assay_families": ["meta_analysis", "machine_learning", "survival_analysis", "statistical_regression", "pca", "molecular_docking", "network_analysis", "differential_expression", "gwas"], "availability_state": "owned", "tier_unlocked": "R1", "candidate": "Automated Assays Laravel application and simulated adapters"}], "gaps": []}, "readiness": {"state": "complete", "tier": "R1", "blocking_axis": "none", "blocked_on": "nothing:replicable_now", "axes": {"method": {"tier": "R1", "expressible": false, "required_operations": [], "missing_operations": ["student_t"], "basis": "The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: student_t_test."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R1", "reachable": true, "accessions": ["GSE114206"], "resolved_accessions": ["GSE114206"], "statements": ["They could be achieved upon reasonable request to the authors."], "basis": "The paper names GSE114206 in GEO database and the accession resolves in the repository. No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": [], "assets": ["source:pmid:34474677", "data:geo:GSE114206"], "steps": []}, "must_build": {"dsl_operations": [{"operation": "student_t", "unlocks_papers": null, "priority": null}], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:GSE114206"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-10-31T18:34:15Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": "verbatim"}, "calls": 3, "usage": {"prompt_tokens": 29496, "completion_tokens": 942, "cached_tokens": 784}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:34474677", "type": "paper", "label": "pmid:34474677"}, {"id": "source:pmid:34474677", "type": "manuscript", "label": "PMID 34474677 full text"}, {"id": "data:geo:GSE114206", "type": "dataset", "label": "GEO GSE114206"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:34474677", "type": "paper", "label": "pmid:34474677"}, {"id": "source:pmid:34474677", "type": "manuscript", "label": "PMID 34474677 full text"}, {"id": "data:geo:GSE114206", "type": "dataset", "label": "GEO GSE114206"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-34474677", "type": "extraction", "used": ["source:pmid:34474677"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-GSE114206", "type": "accession_resolution", "used": ["data:geo:GSE114206"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:34474677", "parent_hash": "sha256:0bed4c97c2171bd1bfad1b7749a206cf7e2a79bf61192907cda03a31b4a8f679", "fork_of": null, "generation": 6}, "gaps": ["asset:data:geo:GSE114206 licence not read", "asset:data:geo:GSE114206 not downloaded", "execution.not_run", "method.student_t", "review.human_critique", "review.independent_reader", "review.machine_critique", "step:run_analysis blocked on method:student_t"], "assays": [{"role": "data_generation", "definition_id": "apoptosis_assay", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["sensitive EOC. Cell viability assay and cell apoptosis assay were performed to explore the roles of", "platinum- resistant and sensitive EOC. Cell viability assay and cell apoptosis assay were performed to e"], "order_basis": "paper_text_order:468", "id": "assay:1"}, {"role": "analysis", "definition_id": "group_comparison", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["A standard Student's t-test determined the statistical significance of differences between the two groups."], "order_basis": "consumes_earlier_output", "id": "assay:2"}]}