Transcriptome dataset of ethylene-treated Klutuk Wulung banana.

{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:34584916", "kind": "science-record", "revision": 3, "content_hash": "sha256:fcc1c051292539111c3f66c7fe6ec3fecadc600b26cfe40d0bfff5ad59b758be", "created_at": "2026-11-01T15:41:54Z", "updated_at": "2026-11-01T18:57:02Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Transcriptome dataset of ethylene-treated Klutuk Wulung banana.", "doi": "10.1016/j.dib.2021.107376", "pmid": "34584916", "authors": ["Fenny Martha Dwivany", "Husna Nugrahapraja", "Lutfi Dewi Nirmala Sari", "Rika Rahma Putri", "Cindy Novianti"], "journal": "Data in brief", "year": 2021, "abstract": "Klutuk Wulung banana (Musa balbisiana Colla, BB Group) is a climacteric fruit whose ripening is influenced by ethylene production. This banana fruit has a relatively slow ripening process time and long shelf-life compared with A genome banana (Musa acuminata, AA). Bananas are usually harvested at a pre-climacteric stage and ripened artificially by exogenous ethylene. Hence, the application of exogenous ethylene at the pre-climacteric stage can accelerate the Klutuk Wulung banana ripening. However, there is no report regarding the effect of exogenous ethylene treatment on Klutuk Wulung banana global gene expression. The knowledge of global gene expression of ethylene treated Klutuk Wulung banana will help to understand this fruit ripening process. In this study, global gene expression data of untreated and ethylene treated Klutuk Wulung banana fruit during ripening were available. Total RNA was extracted from fruit pulp for differential expressed gene analysis using RNA-Seq. The RNA-Seq results obtained were ranged from 34,565,252 to 44,752,129 total reads, with 80.5% to 86.7% of reads were mapped against Klutuk Wulung banana genome reference derived from The Banana Genome Hub. In total, 29,968,128 to 37,776,907 transcripts were detected. The transcriptome data discussed in this article were deposited into NCBI's Gene Expression Omnibus (GEO) Series with an accession number GSE162077. These data can be used as information to identify gene candidates involved in fruit ripening for the application in banana postharvest program.", "claims": [{"id": "claim-data-access", "statement": "Data accessibilityNCBI's Gene Expression Omnibus (GEO) with GEO series accession number GSE162077https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE162077Raw data are available at NCBI's Sequence Read Archive (SRA) database (accession number SRP293766)https://www.ncbi.nlm.nih.gov/sra?term=SRP293766", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:34584916", "locator": "sections[2] \"table-wrap\" paragraph 1", "quote": "Data accessibilityNCBI's Gene Expression Omnibus (GEO) with GEO series accession number GSE162077https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE162077Raw data are available at NCBI's Sequence Read Archive (SRA) database (accession number SRP293766)https://www.ncbi.nlm.nih.gov/sra?term=SRP293766"}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": null, "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:34584916"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE162077"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE162077"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:34584916", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1016/j.dib.2021.107376", "sha256": "sha256:a64c8fefd6eda1599380aa9037942255e4cf9d1ef46f243f261601603379664e", "bytes": 16288, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.1016/j.dib.2021.107376", "version": null, "note": "Full article fetched from PMC; 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This data was generated from day 1 control (K1), day 1 ethylene-treatment (E1), day 7 control (K7), and day 7 ethylene-treatment (E7) of Musa balbisiana (BB Group) ‘Klutuk Wulung’ fruit in each replicate (replicate A, B, and C) of the paired-end experiment: forward reads (1) and reverse reads (2).", "structure": {"pmcid": "PMC8455975", "section_index": 5, "section_title": "Data Description", "row_count": 18, "column_count": 5}, "table": {"label": "Table 1", "caption": "The transcriptome's raw data output statistics of Musa balbisiana (BB Group) ‘Klutuk Wulung’ fruit. This data was generated from day 1 control (K1), day 1 ethylene-treatment (E1), day 7 control (K7), and day 7 ethylene-treatment (E7) of Musa balbisiana (BB Group) ‘Klutuk Wulung’ fruit in each replicate (replicate A, B, and C) of the paired-end experiment: forward reads (1) and reverse reads (2).", "rows": [["No.", "Samples ID", "Total Reads", "Total Nucleotides", "GC Percentage"], ["1.", "KLU_K1_A_2", "12,375,633,236", "40,978,918", "48"], ["2.", "KLU_K1_B_1", "13,550,373,976", "44,752,129", "46"], ["3.", "KLU_ K1_B_2", "13,550,373,976", "44,752,129", "46"], ["4.", "KLU_K7_A_1", "12,061,027,152", "39,937,176", "46"], ["5.", "KLU_K7_B_1", "11,725,286,504", "38,717,505", "46"], ["6.", "KLU_K7_B_2", "11,725,286,504", "38,717,506", "46"], ["7.", "KLU_K7_C_1", "13,233,109,084", "43,705,956", "47"], ["8.", "KLU_K7_C_2", "13,233,109,084", "43,705,957", "47"], ["9.", "KLU_E1_A_1", "10,466,471,984", "34,565,252", "47"], ["10.", "KLU_E1_A_2", "10,466,471,984", "34,565,252", "47"], ["11.", "KLU_E1_C_1", "13,041,604,240", "43,072,452", "47"], ["12.", "KLU_E1_C_2", "13,041,604,240", "43,072,452", "47"], ["13.", "KLU_E7_A_1", "11,575,494,202", "38,329,451", "47"], ["14.", "KLU_E7_B_1", "13,523,350,412", "44,641,478", "47"], ["15.", "KLU_E7_B_2", "13,523,350,412", "44,641,479", "47"], ["16.", "KLU_E7_C_1", "11,731,797,926", "38,752,036", "48"], ["17.", "KLU_E7_C_2", "11,731,797,926", "38,752,037", "48"]], "row_count": 18, "column_count": 5, "numeric_cells": 85, "header_rows": 1, "locator": "section[5]/table-wrap[1]#tbl0001"}}, {"id": "asset:table:pmid:34584916:2", "role": "table", "format": "jats-table", "media_type": "application/vnd.jats.table+json", "uri": null, "sha256": "sha256:182f60649685884fd8e3bd403d3f95404e8123ddc280d3c72397db5b2ab39b76", "bytes": 1050, "access": "open", "state": "verified", "reader": "read_table", "reader_status": "available", "identifier": "section[5]/table-wrap[2]#tbl0002", "version": null, "note": "Result of mapping and transcripts detection of Musa balbisiana (BB Group) ‘Klutuk Wulung’ fruit transcriptome. This data was generated from day 1 control (K1), day 1 ethylene-treatment (E1), day 7 control (K7), and day 7 ethylene-treatment (E7) of Musa balbisiana (BB Group) ‘Klutuk Wulung’ fruit.", "structure": {"pmcid": "PMC8455975", "section_index": 5, "section_title": "Data Description", "row_count": 11, "column_count": 5}, "table": {"label": "Table 2", "caption": "Result of mapping and transcripts detection of Musa balbisiana (BB Group) ‘Klutuk Wulung’ fruit transcriptome. 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The transcriptome data discussed in this article were deposite", "r differential expressed gene analysis using RNA-Seq. The RNA-Seq results obtained were ranged fr", "l expressed gene analysis using RNA-Seq. The RNA-Seq results obtained were ranged from 34,565,252"], "order_basis": "paper_text_order:0", "id": "assay:1"}]}