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pmid:34733654
The prognostic roles of CYP19A1 expression in bladder cancer patients of different genders.
Shanghua Cai · Yuanfa Feng · Jianheng Ye · Yulin Deng · Zhiduan Cai · Xuejin Zhu · Ren Liu · Yixun Zhang · Zhihao Zou · Zhenfeng Tang · Zhaodong Han · Chi Tin Hon · Weide Zhong · Huichan He
Translational andrology and urology · 2021 doi:10.21037/tau-21-400
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Experiment
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Complete file
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Although many biomarkers have been identified in recent decades to predict the prognosis of BCa patients, few of them are able to distinguish the prognosis of BCa patients with gender difference. Aromatase encoded by the CYP19A1 gene catalyzes the conversion of androgens to estrogens. In this study, we investigate the prognosis significance of CYP19A1 expression considering the gender difference in BCa patients from four available public databases.\nMETHODS: Four available public databases of BCa, including GSE13507, TCGA-BLCA, E-MTAB-4321, and E-MTAB-1803, were utilized in this analysis. The overall survival (OS) and progression-free survival (PFS) in different stages and genders were evaluated using the Kaplan-Meier analysis based on the optimal cut-off values of CYP19A1 expression. Then, Gene Set Enrichment Analysis (GSEA) were further performed to explore the potential biologic pathways by altering CYP19A1 expression in BCa patients.\nRESULTS: The results showed that patients with high CYP19A1 expression had a poorer outcome compared with those with low expression in both BCa cohorts in general. Higher CYP19A1 expression in male patients were significantly associated with shorter survival for either non-muscle-invasive bladder cancer (NMIBC) or muscle-invasive bladder cancer (MIBC). However, female NMIBC patients with high CYP19A1 expression were identified to have a better prognosis, whereas high CYP19A1 expression in female MIBC patients were significantly associated with poorer survival. The result of the GSEA showed that different outcomes in female and male patients with NMIBC were related to the interaction of CYP19A1 and the cell-cycle-related pathways.\nCONCLUSIONS: These findings demonstrated that CYP19A1 expression might have a potential role in distinguishing the prognosis of female BCa patients dependent on tumor stage. 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No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": ["survival_km"], "assets": ["source:pmid:34733654", "data:geo:E-MTAB-1803"], "steps": ["run_analysis"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:E-MTAB-1803"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-11-01T17:05:30Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": null}, "calls": 5, "usage": {"prompt_tokens": 8758, "completion_tokens": 1556, "cached_tokens": 128}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:34733654", "type": "paper", "label": "pmid:34733654"}, {"id": "source:pmid:34733654", "type": "manuscript", "label": "PMID 34733654 full text"}, {"id": "data:geo:E-MTAB-1803", "type": "dataset", "label": "GEO E-MTAB-1803"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:34733654", "type": "paper", "label": "pmid:34733654"}, {"id": "source:pmid:34733654", "type": "manuscript", "label": "PMID 34733654 full text"}, {"id": "data:geo:E-MTAB-1803", "type": "dataset", "label": "GEO E-MTAB-1803"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-34733654", "type": "extraction", "used": ["source:pmid:34733654"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-E-MTAB-1803", "type": "accession_resolution", "used": ["data:geo:E-MTAB-1803"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:34733654", "parent_hash": "sha256:bafa4289ea7e76e4d055e881693f94fcbc9cc8f7ccae9f67e19b956161c25b25", "fork_of": null, "generation": 4}, "gaps": ["asset:data:geo:E-MTAB-1803 licence not read", "asset:data:geo:E-MTAB-1803 not downloaded", "asset:data:geo:E-MTAB-4321 licence not read", "asset:data:geo:E-MTAB-4321 not downloaded", "asset:data:geo:GSE13507 licence not read", "asset:data:geo:GSE13507 not downloaded", "execution.not_run", "method.reader_differs_from_extractor", "review.human_critique", "review.independent_reader", "review.machine_critique"], "assays": [{"role": "analysis", "definition_id": "survival_analysis", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["survival_km"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["The OS and progression-free survival (PFS) were evaluated using the Kaplan-Meier method and the log-rank test based on the cut-off values using the survminer R package."], "order_basis": "analysis_only", "id": "assay:1"}]}