← All .science files

pmid:34880861

CD247, a Potential T Cell-Derived Disease Severity and Prognostic Biomarker in Patients With Idiopathic Pulmonary Fibrosis.

Yupeng Li · Shibin Chen · Xincheng Li · Xue Wang · Huiwen Li · Shangwei Ning · Hong Chen

Frontiers in immunology · 2021 doi:10.3389/fimmu.2021.762594

Paper

complete

Experiment

complete

Data

partial

Analysis

partial

Execution

absent

Execution evidence has not yet been added to this .science file. Explore its methods, data and open questions to plan the next step.

In this file

The fields below come from the published .science file. Expand a section to inspect its evidence.

Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator

sci_version

1.2

pmid:34880861

kind

science-record

revision

content_hash

sha256:aaf6a0608e47736b665b0568986f0f58a06c6947cafc085aa5de698b88fc57be

schema

https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json

created_at

2026-11-01T17:36:35Z

updated_at

2026-11-01T22:48:01Z

generator object · 2 fields

name

corpus-assay-engine

run_id

reading-sci-2026-11-01

paper object · 10 fields

state

complete

title

CD247, a Potential T Cell-Derived Disease Severity and Prognostic Biomarker in Patients With Idiopathic Pulmonary Fibrosis.

doi

10.3389/fimmu.2021.762594

pmid

34880861

authors array · 7 items

[0]

Yupeng Li

[1]

Shibin Chen

[2]

Xincheng Li

[3]

Xue Wang

[4]

Huiwen Li

[5]

Shangwei Ning

[6]

Hong Chen

journal

Frontiers in immunology

year

2021

abstract

Background: Idiopathic pulmonary fibrosis (IPF) has high mortality worldwide. The CD247 molecule (CD247, as known as T-cell surface glycoprotein CD3 zeta chain) has been reported as a susceptibility locus in systemic sclerosis, but its correlation with IPF remains unclear. Methods: Datasets were acquired by researching the Gene Expression Omnibus (GEO). CD247 was identified as the hub gene associated with percent predicted diffusion capacity of the lung for carbon monoxide (Dlco% predicted) and prognosis according to Pearson correlation, logistic regression, and survival analysis. Results: CD247 is significantly downregulated in patients with IPF compared with controls in both blood and lung tissue samples. Moreover, CD247 is significantly positively associated with Dlco% predicted in blood and lung tissue samples. Patients with low-expression CD247 had shorter transplant-free survival (TFS) time and more composite end-point events (CEP, death, or decline in FVC >10% over a 6-month period) compared with patients with high-expression CD247 (blood). Moreover, in the follow-up 1st, 3rd, 6th, and 12th months, low expression of CD247 was still the risk factor of CEP in the GSE93606 dataset (blood). Thirteen genes were found to interact with CD247 according to the protein-protein interaction network, and the 14 genes including CD247 were associated with the functions of T cells and natural killer (NK) cells such as PD-L1 expression and PD-1 checkpoint pathway and NK cell-mediated cytotoxicity. Furthermore, we also found that a low expression of CD247 might be associated with a lower activity of TIL (tumor-infiltrating lymphocytes), checkpoint, and cytolytic activity and a higher activity of macrophages and neutrophils. Conclusion: These results imply that CD247 may be a potential T cell-derived disease severity and prognostic biomarker for IPF.

claims array · 2 items

[0] object · 6 fields

claim-method

statement

CD247 was identified as the hub gene associated with percent predicted diffusion capacity of the lung for carbon monoxide (Dlco% predicted) and prognosis according to Pearson correlation, logistic regression, and survival analysis.

kind

methodological

target

null

evidence array · 1 item

[0] object · 3 fields

asset

source:pmid:34880861

locator

sections[0] "Abstract" paragraph 2

quote

state

complete

[1] object · 6 fields

claim-data-access

statement

Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .

kind

methodological

target

null

evidence array · 1 item

[0] object · 3 fields

asset

source:pmid:34880861

locator

sections[16] "Data Availability Statement" paragraph 2

quote

state

complete

gaps array · 0 items

experiment object · 8 fields

state

complete

objective

steps array · 3 items

[0] object · 13 fields

read_published_estimate

order

name

Read the published estimate from the source

kind

other

state

complete

blocked_on

null

description

The claim, method and evidence span published with the source article.

duration_hours

null

parameters object · 0 fields

inputs array · 1 item

[0]

source:pmid:34880861

outputs array · 1 item

[0]

the published estimate and its evidence

instruments array · 0 items

reagents array · 0 items

[1] object · 13 fields

obtain_source_data

order

name

Obtain the source data from the named repository

kind

data-preparation

state

complete

blocked_on

null

description

The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.

duration_hours

null

parameters object · 0 fields

inputs array · 1 item

[0]

data:geo:GSE110147

outputs array · 1 item

[0]

the source data with its repository provenance

instruments array · 0 items

reagents array · 0 items

[2] object · 13 fields

run_analysis

order

name

Run the published analysis

kind

analysis

state

complete

blocked_on

null

description

Apply the paper's statistical method to the resolved series and compare the result with the published target.

duration_hours

null

parameters object · 0 fields

inputs array · 1 item

[0]

data:geo:GSE110147

outputs array · 1 item

[0]

the replicated result and its comparison

instruments array · 0 items

reagents array · 0 items

materials array · 0 items

instruments array · 0 items

reagents array · 0 items

conditions object · 0 fields

gaps array · 0 items

data object · 3 fields

state

partial

assets array · 12 items

[0] object · 15 fields

source:pmid:34880861

role

manuscript

format

xml

media_type

application/xml

uri

https://doi.org/10.3389/fimmu.2021.762594

sha256

sha256:61e9cce774049b29ef90cf05bd9db080c4fb43dc711b295843654cc8ff108e50

bytes

51492

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

10.3389/fimmu.2021.762594

version

null

note

Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.

structure object · 4 fields

pmcid

PMC8645971

source

europe_pmc_fulltext

coverage

whole_body

text_hash_scope

rendered_section_body

[1] object · 15 fields

data:geo:GSE110147

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE110147

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 48 items

[0]

GSM2978752

[1]

GSM2978753

[2]

GSM2978754

[3]

GSM2978755

[4]

GSM2978756

[5]

GSM2978757

[6]

GSM2978758

[7]

GSM2978759

[8]

GSM2978760

[9]

GSM2978761

[10]

GSM2978762

[11]

GSM2978763

[12]

GSM2978764

[13]

GSM2978765

[14]

GSM2978766

[15]

GSM2978767

[16]

GSM2978768

[17]

GSM2978769

[18]

GSM2978770

[19]

GSM2978771

[20]

GSM2978772

[21]

GSM2978773

[22]

GSM2978774

[23]

GSM2978775

[24]

GSM2978776

[25]

GSM2978777

[26]

GSM2978778

[27]

GSM2978779

[28]

GSM2978780

[29]

GSM2978781

[30]

GSM2978782

[31]

GSM2978783

[32]

GSM2978784

[33]

GSM2978785

[34]

GSM2978786

[35]

GSM2978787

[36]

GSM2978788

[37]

GSM2978789

[38]

GSM2978790

[39]

GSM2978791

[40]

GSM2978792

[41]

GSM2978793

[42]

GSM2978794

[43]

GSM2978795

[44]

GSM2978796

[45]

GSM2978797

[46]

GSM2978798

[47]

GSM2978799

sample_count

group_sizes

null

group_sizes_basis

null

platform

6244

taxon

Homo sapiens

title

Gene expression profiling of idiopathic pulmonary fibrosis and non-specific interstitial pneumonia

resolution_checked_at

2026-11-01T17:30:42Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

[2] object · 15 fields

data:geo:GSE132607

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE132607

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 276 items

[0]

GSM3879744

[1]

GSM3879745

[2]

GSM3879746

[3]

GSM3879747

[4]

GSM3879748

[5]

GSM3879749

[6]

GSM3879750

[7]

GSM3879751

[8]

GSM3879752

[9]

GSM3879753

[10]

GSM3879754

[11]

GSM3879755

[12]

GSM3879756

[13]

GSM3879757

[14]

GSM3879758

[15]

GSM3879759

[16]

GSM3879760

[17]

GSM3879761

[18]

GSM3879762

[19]

GSM3879763

[20]

GSM3879764

[21]

GSM3879765

[22]

GSM3879766

[23]

GSM3879767

[24]

GSM3879768

[25]

GSM3879769

[26]

GSM3879770

[27]

GSM3879771

[28]

GSM3879772

[29]

GSM3879773

[30]

GSM3879774

[31]

GSM3879775

[32]

GSM3879776

[33]

GSM3879777

[34]

GSM3879778

[35]

GSM3879779

[36]

GSM3879780

[37]

GSM3879781

[38]

GSM3879782

[39]

GSM3879783

[40]

GSM3879784

[41]

GSM3879785

[42]

GSM3879786

[43]

GSM3879787

[44]

GSM3879788

[45]

GSM3879789

[46]

GSM3879790

[47]

GSM3879791

[48]

GSM3879792

[49]

GSM3879793

[50]

GSM3879794

[51]

GSM3879795

[52]

GSM3879796

[53]

GSM3879797

[54]

GSM3879798

[55]

GSM3879799

[56]

GSM3879800

[57]

GSM3879801

[58]

GSM3879802

[59]

GSM3879803

[60]

GSM3879804

[61]

GSM3879805

[62]

GSM3879806

[63]

GSM3879807

[64]

GSM3879808

[65]

GSM3879809

[66]

GSM3879810

[67]

GSM3879811

[68]

GSM3879812

[69]

GSM3879813

[70]

GSM3879814

[71]

GSM3879815

[72]

GSM3879816

[73]

GSM3879817

[74]

GSM3879818

[75]

GSM3879819

[76]

GSM3879820

[77]

GSM3879821

[78]

GSM3879822

[79]

GSM3879823

[80]

GSM3879824

[81]

GSM3879825

[82]

GSM3879826

[83]

GSM3879827

[84]

GSM3879828

[85]

GSM3879829

[86]

GSM3879830

[87]

GSM3879831

[88]

GSM3879832

[89]

GSM3879833

[90]

GSM3879834

[91]

GSM3879835

[92]

GSM3879836

[93]

GSM3879837

[94]

GSM3879838

[95]

GSM3879839

[96]

GSM3879840

[97]

GSM3879841

[98]

GSM3879842

[99]

GSM3879843

[100]

GSM3879844

[101]

GSM3879845

[102]

GSM3879846

[103]

GSM3879847

[104]

GSM3879848

[105]

GSM3879849

[106]

GSM3879850

[107]

GSM3879851

[108]

GSM3879852

[109]

GSM3879853

[110]

GSM3879854

[111]

GSM3879855

[112]

GSM3879856

[113]

GSM3879857

[114]

GSM3879858

[115]

GSM3879859

[116]

GSM3879860

[117]

GSM3879861

[118]

GSM3879862

[119]

GSM3879863

[120]

GSM3879864

[121]

GSM3879865

[122]

GSM3879866

[123]

GSM3879867

[124]

GSM3879868

[125]

GSM3879869

[126]

GSM3879870

[127]

GSM3879871

[128]

GSM3879872

[129]

GSM3879873

[130]

GSM3879874

[131]

GSM3879875

[132]

GSM3879876

[133]

GSM3879877

[134]

GSM3879878

[135]

GSM3879879

[136]

GSM3879880

[137]

GSM3879881

[138]

GSM3879882

[139]

GSM3879883

[140]

GSM3879884

[141]

GSM3879885

[142]

GSM3879886

[143]

GSM3879887

[144]

GSM3879888

[145]

GSM3879889

[146]

GSM3879890

[147]

GSM3879891

[148]

GSM3879892

[149]

GSM3879893

[150]

GSM3879894

[151]

GSM3879895

[152]

GSM3879896

[153]

GSM3879897

[154]

GSM3879898

[155]

GSM3879899

[156]

GSM3879900

[157]

GSM3879901

[158]

GSM3879902

[159]

GSM3879903

[160]

GSM3879904

[161]

GSM3879905

[162]

GSM3879906

[163]

GSM3879907

[164]

GSM3879908

[165]

GSM3879909

[166]

GSM3879910

[167]

GSM3879911

[168]

GSM3879912

[169]

GSM3879913

[170]

GSM3879914

[171]

GSM3879915

[172]

GSM3879916

[173]

GSM3879917

[174]

GSM3879918

[175]

GSM3879919

[176]

GSM3879920

[177]

GSM3879921

[178]

GSM3879922

[179]

GSM3879923

[180]

GSM3879924

[181]

GSM3879925

[182]

GSM3879926

[183]

GSM3879927

[184]

GSM3879928

[185]

GSM3879929

[186]

GSM3879930

[187]

GSM3879931

[188]

GSM3879932

[189]

GSM3879933

[190]

GSM3879934

[191]

GSM3879935

[192]

GSM3879936

[193]

GSM3879937

[194]

GSM3879938

[195]

GSM3879939

[196]

GSM3879940

[197]

GSM3879941

[198]

GSM3879942

[199]

GSM3879943

[200]

GSM3879944

[201]

GSM3879945

[202]

GSM3879946

[203]

GSM3879947

[204]

GSM3879948

[205]

GSM3879949

[206]

GSM3879950

[207]

GSM3879951

[208]

GSM3879952

[209]

GSM3879953

[210]

GSM3879954

[211]

GSM3879955

[212]

GSM3879956

[213]

GSM3879957

[214]

GSM3879958

[215]

GSM3879959

[216]

GSM3879960

[217]

GSM3879961

[218]

GSM3879962

[219]

GSM3879963

[220]

GSM3879964

[221]

GSM3879965

[222]

GSM3879966

[223]

GSM3879967

[224]

GSM3879968

[225]

GSM3879969

[226]

GSM3879970

[227]

GSM3879971

[228]

GSM3879972

[229]

GSM3879973

[230]

GSM3879974

[231]

GSM3879975

[232]

GSM3879976

[233]

GSM3879977

[234]

GSM3879978

[235]

GSM3879979

[236]

GSM3879980

[237]

GSM3879981

[238]

GSM3879982

[239]

GSM3879983

[240]

GSM3879984

[241]

GSM3879985

[242]

GSM3879986

[243]

GSM3879987

[244]

GSM3879988

[245]

GSM3879989

[246]

GSM3879990

[247]

GSM3879991

[248]

GSM3879992

[249]

GSM3879993

[250]

GSM3879994

[251]

GSM3879995

[252]

GSM3879996

[253]

GSM3879997

[254]

GSM3879998

[255]

GSM3879999

[256]

GSM3880000

[257]

GSM3880001

[258]

GSM3880002

[259]

GSM3880003

[260]

GSM3880004

[261]

GSM3880005

[262]

GSM3880006

[263]

GSM3880007

[264]

GSM3880008

[265]

GSM3880009

[266]

GSM3880010

[267]

GSM3880011

[268]

GSM3880012

[269]

GSM3880013

[270]

GSM3880014

[271]

GSM3880015

[272]

GSM3880016

[273]

GSM3880017

[274]

GSM3880018

[275]

GSM3880019

sample_count

276

group_sizes

null

group_sizes_basis

null

platform

15207

taxon

Homo sapiens

title

Longitudinal Blood Transcriptomic Changes Predict Lung Function Decline in Idiopathic Pulmonary Fibrosis

resolution_checked_at

2026-11-01T17:30:42Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

[3] object · 15 fields

data:geo:GSE141259

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE141259

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 60 items

[0]

GSM4200035

[1]

GSM4200036

[2]

GSM4200037

[3]

GSM4200038

[4]

GSM4200039

[5]

GSM4200040

[6]

GSM4200041

[7]

GSM4200042

[8]

GSM4200043

[9]

GSM4200044

[10]

GSM4200045

[11]

GSM4200046

[12]

GSM4200047

[13]

GSM4200048

[14]

GSM4200049

[15]

GSM4200050

[16]

GSM4200051

[17]

GSM4200052

[18]

GSM4200053

[19]

GSM4200054

[20]

GSM4200055

[21]

GSM4200056

[22]

GSM4200057

[23]

GSM4200058

[24]

GSM4200059

[25]

GSM4200060

[26]

GSM4200061

[27]

GSM4200062

[28]

GSM4200063

[29]

GSM4200064

[30]

GSM4200065

[31]

GSM4200066

[32]

GSM4200067

[33]

GSM4200068

[34]

GSM4200069

[35]

GSM4200070

[36]

GSM4200071

[37]

GSM4200072

[38]

GSM4200073

[39]

GSM4200074

[40]

GSM4200075

[41]

GSM4200076

[42]

GSM4200077

[43]

GSM4200078

[44]

GSM4200079

[45]

GSM4200080

[46]

GSM4200081

[47]

GSM4200082

[48]

GSM4200083

[49]

GSM4200084

[50]

GSM4200085

[51]

GSM4200086

[52]

GSM4200087

[53]

GSM4200088

[54]

GSM4200089

[55]

GSM4200090

[56]

GSM4200091

[57]

GSM4200092

[58]

GSM4200093

[59]

GSM4200094

sample_count

group_sizes

null

group_sizes_basis

null

platform

21103

taxon

Mus musculus

title

Longitudinal single-cell transcriptomics analysis of mouse lung upon bleomycin-induced injury

resolution_checked_at

2026-11-01T17:30:42Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

[4] object · 15 fields

data:geo:GSE27957

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE27957

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 45 items

[0]

GSM691362

[1]

GSM691363

[2]

GSM691364

[3]

GSM691365

[4]

GSM691366

[5]

GSM691367

[6]

GSM691368

[7]

GSM691369

[8]

GSM691370

[9]

GSM691371

[10]

GSM691372

[11]

GSM691373

[12]

GSM691374

[13]

GSM691375

[14]

GSM691376

[15]

GSM691377

[16]

GSM691378

[17]

GSM691379

[18]

GSM691380

[19]

GSM691381

[20]

GSM691382

[21]

GSM691383

[22]

GSM691384

[23]

GSM691385

[24]

GSM691386

[25]

GSM691387

[26]

GSM691388

[27]

GSM691389

[28]

GSM691390

[29]

GSM691391

[30]

GSM691392

[31]

GSM691393

[32]

GSM691394

[33]

GSM691395

[34]

GSM691396

[35]

GSM691397

[36]

GSM691398

[37]

GSM691399

[38]

GSM691400

[39]

GSM691401

[40]

GSM691402

[41]

GSM691403

[42]

GSM691404

[43]

GSM691405

[44]

GSM691406

sample_count

group_sizes

null

group_sizes_basis

null

platform

5175

taxon

Homo sapiens

title

Peripheral Blood Mononuclear Cell Gene Expression Profiles May Predict Poor Outcome in Idiopathic Pulmonary Fibrosis [Affymetrix]

resolution_checked_at

2026-11-01T15:39:54Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

[5] object · 15 fields

data:geo:GSE28042

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE28042

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 94 items

[0]

GSM693750

[1]

GSM693751

[2]

GSM693752

[3]

GSM693753

[4]

GSM693754

[5]

GSM693755

[6]

GSM693756

[7]

GSM693757

[8]

GSM693758

[9]

GSM693759

[10]

GSM693760

[11]

GSM693761

[12]

GSM693762

[13]

GSM693763

[14]

GSM693764

[15]

GSM693765

[16]

GSM693766

[17]

GSM693767

[18]

GSM693768

[19]

GSM693769

[20]

GSM693770

[21]

GSM693771

[22]

GSM693772

[23]

GSM693773

[24]

GSM693774

[25]

GSM693775

[26]

GSM693776

[27]

GSM693777

[28]

GSM693778

[29]

GSM693779

[30]

GSM693780

[31]

GSM693781

[32]

GSM693782

[33]

GSM693783

[34]

GSM693784

[35]

GSM693785

[36]

GSM693786

[37]

GSM693787

[38]

GSM693788

[39]

GSM693789

[40]

GSM693790

[41]

GSM693791

[42]

GSM693792

[43]

GSM693793

[44]

GSM693794

[45]

GSM693795

[46]

GSM693796

[47]

GSM693797

[48]

GSM693798

[49]

GSM693799

[50]

GSM693800

[51]

GSM693801

[52]

GSM693802

[53]

GSM693803

[54]

GSM693804

[55]

GSM693805

[56]

GSM693806

[57]

GSM693807

[58]

GSM693808

[59]

GSM693809

[60]

GSM693810

[61]

GSM693811

[62]

GSM693812

[63]

GSM693813

[64]

GSM693814

[65]

GSM693815

[66]

GSM693816

[67]

GSM693817

[68]

GSM693818

[69]

GSM693819

[70]

GSM693820

[71]

GSM693821

[72]

GSM693822

[73]

GSM693823

[74]

GSM693824

[75]

GSM698440

[76]

GSM698441

[77]

GSM698442

[78]

GSM698443

[79]

GSM698444

[80]

GSM698445

[81]

GSM698446

[82]

GSM698447

[83]

GSM698448

[84]

GSM698449

[85]

GSM698450

[86]

GSM698451

[87]

GSM698452

[88]

GSM698453

[89]

GSM698454

[90]

GSM698455

[91]

GSM698456

[92]

GSM698457

[93]

GSM698458

sample_count

group_sizes

null

group_sizes_basis

null

platform

6480

taxon

Homo sapiens

title

Peripheral Blood Mononuclear Cell Gene Expression Profiles May Predict Poor Outcome in Idiopathic Pulmonary Fibrosis [Agilent]

resolution_checked_at

2026-11-01T15:39:54Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

[6] object · 15 fields

data:geo:GSE32537

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE32537

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 217 items

[0]

GSM806204

[1]

GSM806205

[2]

GSM806206

[3]

GSM806207

[4]

GSM806208

[5]

GSM806209

[6]

GSM806210

[7]

GSM806211

[8]

GSM806212

[9]

GSM806213

[10]

GSM806214

[11]

GSM806215

[12]

GSM806216

[13]

GSM806217

[14]

GSM806218

[15]

GSM806219

[16]

GSM806220

[17]

GSM806221

[18]

GSM806222

[19]

GSM806223

[20]

GSM806224

[21]

GSM806225

[22]

GSM806226

[23]

GSM806227

[24]

GSM806228

[25]

GSM806229

[26]

GSM806230

[27]

GSM806231

[28]

GSM806232

[29]

GSM806233

[30]

GSM806234

[31]

GSM806235

[32]

GSM806236

[33]

GSM806237

[34]

GSM806238

[35]

GSM806239

[36]

GSM806240

[37]

GSM806241

[38]

GSM806242

[39]

GSM806243

[40]

GSM806244

[41]

GSM806245

[42]

GSM806246

[43]

GSM806247

[44]

GSM806248

[45]

GSM806249

[46]

GSM806250

[47]

GSM806251

[48]

GSM806252

[49]

GSM806253

[50]

GSM806254

[51]

GSM806255

[52]

GSM806256

[53]

GSM806257

[54]

GSM806258

[55]

GSM806259

[56]

GSM806260

[57]

GSM806261

[58]

GSM806262

[59]

GSM806263

[60]

GSM806264

[61]

GSM806265

[62]

GSM806266

[63]

GSM806267

[64]

GSM806268

[65]

GSM806269

[66]

GSM806270

[67]

GSM806271

[68]

GSM806272

[69]

GSM806273

[70]

GSM806274

[71]

GSM806275

[72]

GSM806276

[73]

GSM806277

[74]

GSM806278

[75]

GSM806279

[76]

GSM806280

[77]

GSM806281

[78]

GSM806282

[79]

GSM806283

[80]

GSM806284

[81]

GSM806285

[82]

GSM806286

[83]

GSM806287

[84]

GSM806288

[85]

GSM806289

[86]

GSM806290

[87]

GSM806291

[88]

GSM806292

[89]

GSM806293

[90]

GSM806294

[91]

GSM806295

[92]

GSM806296

[93]

GSM806297

[94]

GSM806298

[95]

GSM806299

[96]

GSM806300

[97]

GSM806301

[98]

GSM806302

[99]

GSM806303

[100]

GSM806304

[101]

GSM806305

[102]

GSM806306

[103]

GSM806307

[104]

GSM806308

[105]

GSM806309

[106]

GSM806310

[107]

GSM806311

[108]

GSM806312

[109]

GSM806313

[110]

GSM806314

[111]

GSM806315

[112]

GSM806316

[113]

GSM806317

[114]

GSM806318

[115]

GSM806319

[116]

GSM806320

[117]

GSM806321

[118]

GSM806322

[119]

GSM806323

[120]

GSM806324

[121]

GSM806325

[122]

GSM806326

[123]

GSM806327

[124]

GSM806328

[125]

GSM806329

[126]

GSM806330

[127]

GSM806331

[128]

GSM806332

[129]

GSM806333

[130]

GSM806334

[131]

GSM806335

[132]

GSM806336

[133]

GSM806337

[134]

GSM806338

[135]

GSM806339

[136]

GSM806340

[137]

GSM806341

[138]

GSM806342

[139]

GSM806343

[140]

GSM806344

[141]

GSM806345

[142]

GSM806346

[143]

GSM806347

[144]

GSM806348

[145]

GSM806349

[146]

GSM806350

[147]

GSM806351

[148]

GSM806352

[149]

GSM806353

[150]

GSM806354

[151]

GSM806355

[152]

GSM806356

[153]

GSM806357

[154]

GSM806358

[155]

GSM806359

[156]

GSM806360

[157]

GSM806361

[158]

GSM806362

[159]

GSM806363

[160]

GSM806364

[161]

GSM806365

[162]

GSM806366

[163]

GSM806367

[164]

GSM806368

[165]

GSM806369

[166]

GSM806370

[167]

GSM806371

[168]

GSM806372

[169]

GSM806373

[170]

GSM806374

[171]

GSM806375

[172]

GSM806376

[173]

GSM806377

[174]

GSM806378

[175]

GSM806379

[176]

GSM806380

[177]

GSM806381

[178]

GSM806382

[179]

GSM806383

[180]

GSM806384

[181]

GSM806385

[182]

GSM806386

[183]

GSM806387

[184]

GSM806388

[185]

GSM806389

[186]

GSM806390

[187]

GSM806391

[188]

GSM806392

[189]

GSM806393

[190]

GSM806394

[191]

GSM806395

[192]

GSM806396

[193]

GSM806397

[194]

GSM806398

[195]

GSM806399

[196]

GSM806400

[197]

GSM806401

[198]

GSM806402

[199]

GSM806403

[200]

GSM806404

[201]

GSM806405

[202]

GSM806406

[203]

GSM806407

[204]

GSM806408

[205]

GSM806409

[206]

GSM806410

[207]

GSM806411

[208]

GSM806412

[209]

GSM806413

[210]

GSM806414

[211]

GSM806415

[212]

GSM806416

[213]

GSM806417

[214]

GSM806418

[215]

GSM806419

[216]

GSM806420

sample_count

217

group_sizes

null

group_sizes_basis

null

platform

6244

taxon

Homo sapiens

title

Molecular phenotyping of the idiopathic interstitial pneumonias [mRNA]

resolution_checked_at

2026-11-01T15:39:54Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

[7] object · 15 fields

data:geo:GSE33566

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE33566

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 123 items

[0]

GSM829965

[1]

GSM829966

[2]

GSM829967

[3]

GSM829968

[4]

GSM829969

[5]

GSM829970

[6]

GSM829971

[7]

GSM829972

[8]

GSM829973

[9]

GSM829974

[10]

GSM829975

[11]

GSM829976

[12]

GSM829977

[13]

GSM829978

[14]

GSM829979

[15]

GSM829980

[16]

GSM829981

[17]

GSM829982

[18]

GSM829983

[19]

GSM829984

[20]

GSM829985

[21]

GSM829986

[22]

GSM829987

[23]

GSM829988

[24]

GSM829989

[25]

GSM829990

[26]

GSM829991

[27]

GSM829992

[28]

GSM829993

[29]

GSM829994

[30]

GSM829995

[31]

GSM829996

[32]

GSM829997

[33]

GSM829998

[34]

GSM829999

[35]

GSM830000

[36]

GSM830001

[37]

GSM830002

[38]

GSM830003

[39]

GSM830004

[40]

GSM830005

[41]

GSM830006

[42]

GSM830007

[43]

GSM830008

[44]

GSM830009

[45]

GSM830010

[46]

GSM830011

[47]

GSM830012

[48]

GSM830013

[49]

GSM830014

[50]

GSM830015

[51]

GSM830016

[52]

GSM830017

[53]

GSM830018

[54]

GSM830019

[55]

GSM830020

[56]

GSM830021

[57]

GSM830022

[58]

GSM830023

[59]

GSM830024

[60]

GSM830025

[61]

GSM830026

[62]

GSM830027

[63]

GSM830028

[64]

GSM830029

[65]

GSM830030

[66]

GSM830031

[67]

GSM830032

[68]

GSM830033

[69]

GSM830034

[70]

GSM830035

[71]

GSM830036

[72]

GSM830037

[73]

GSM830038

[74]

GSM830039

[75]

GSM830040

[76]

GSM830041

[77]

GSM830042

[78]

GSM830043

[79]

GSM830044

[80]

GSM830045

[81]

GSM830046

[82]

GSM830047

[83]

GSM830048

[84]

GSM830049

[85]

GSM830050

[86]

GSM830051

[87]

GSM830052

[88]

GSM830053

[89]

GSM830054

[90]

GSM830055

[91]

GSM830056

[92]

GSM830057

[93]

GSM830058

[94]

GSM830059

[95]

GSM830060

[96]

GSM830061

[97]

GSM830062

[98]

GSM830063

[99]

GSM830064

[100]

GSM830065

[101]

GSM830066

[102]

GSM830067

[103]

GSM830068

[104]

GSM830069

[105]

GSM830070

[106]

GSM830071

[107]

GSM830072

[108]

GSM830073

[109]

GSM830074

[110]

GSM830075

[111]

GSM830076

[112]

GSM830077

[113]

GSM830078

[114]

GSM830079

[115]

GSM830080

[116]

GSM830081

[117]

GSM830082

[118]

GSM830083

[119]

GSM830084

[120]

GSM830085

[121]

GSM830086

[122]

GSM830087

sample_count

123

group_sizes

null

group_sizes_basis

null

platform

6480

taxon

Homo sapiens

title

The Peripheral Blood Transcriptome Predicts the Presence and Extent of Disease in Idiopathic Pulmonary Fibrosis

resolution_checked_at

2026-11-01T17:30:42Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

[8] object · 15 fields

data:geo:GSE38958

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE38958

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 115 items

[0]

GSM952756

[1]

GSM952757

[2]

GSM952758

[3]

GSM952759

[4]

GSM952760

[5]

GSM952761

[6]

GSM952762

[7]

GSM952763

[8]

GSM952764

[9]

GSM952765

[10]

GSM952766

[11]

GSM952767

[12]

GSM952768

[13]

GSM952769

[14]

GSM952770

[15]

GSM952771

[16]

GSM952772

[17]

GSM952773

[18]

GSM952774

[19]

GSM952775

[20]

GSM952776

[21]

GSM952777

[22]

GSM952778

[23]

GSM952779

[24]

GSM952780

[25]

GSM952781

[26]

GSM952782

[27]

GSM952783

[28]

GSM952784

[29]

GSM952785

[30]

GSM952786

[31]

GSM952787

[32]

GSM952788

[33]

GSM952789

[34]

GSM952790

[35]

GSM952791

[36]

GSM952792

[37]

GSM952793

[38]

GSM952794

[39]

GSM952795

[40]

GSM952796

[41]

GSM952797

[42]

GSM952798

[43]

GSM952799

[44]

GSM952800

[45]

GSM952801

[46]

GSM952802

[47]

GSM952803

[48]

GSM952804

[49]

GSM952805

[50]

GSM952806

[51]

GSM952807

[52]

GSM952808

[53]

GSM952809

[54]

GSM952810

[55]

GSM952811

[56]

GSM952812

[57]

GSM952813

[58]

GSM952814

[59]

GSM952815

[60]

GSM952816

[61]

GSM952817

[62]

GSM952818

[63]

GSM952819

[64]

GSM952820

[65]

GSM952821

[66]

GSM952822

[67]

GSM952823

[68]

GSM952824

[69]

GSM952825

[70]

GSM952826

[71]

GSM952827

[72]

GSM952828

[73]

GSM952829

[74]

GSM952830

[75]

GSM952831

[76]

GSM952832

[77]

GSM952833

[78]

GSM952834

[79]

GSM952835

[80]

GSM952836

[81]

GSM952837

[82]

GSM952838

[83]

GSM952839

[84]

GSM952840

[85]

GSM952841

[86]

GSM952842

[87]

GSM952843

[88]

GSM952844

[89]

GSM952845

[90]

GSM952846

[91]

GSM952847

[92]

GSM952848

[93]

GSM952849

[94]

GSM952850

[95]

GSM952851

[96]

GSM952852

[97]

GSM952853

[98]

GSM952854

[99]

GSM952855

[100]

GSM952856

[101]

GSM952857

[102]

GSM952858

[103]

GSM952859

[104]

GSM952860

[105]

GSM952861

[106]

GSM952862

[107]

GSM952863

[108]

GSM952864

[109]

GSM952865

[110]

GSM952866

[111]

GSM952867

[112]

GSM952868

[113]

GSM952869

[114]

GSM952870

sample_count

115

group_sizes

null

group_sizes_basis

null

platform

5175

taxon

Homo sapiens

title

Profiling of Gene Expression in Idiopathic Pulmonary Fibrosis

resolution_checked_at

2026-11-01T17:30:42Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

[9] object · 15 fields

data:geo:GSE47460

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE47460

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 582 items

[0]

GSM1149948

[1]

GSM1149949

[2]

GSM1149950

[3]

GSM1149951

[4]

GSM1149952

[5]

GSM1149953

[6]

GSM1149954

[7]

GSM1149955

[8]

GSM1149956

[9]

GSM1149957

[10]

GSM1149958

[11]

GSM1149959

[12]

GSM1149960

[13]

GSM1149961

[14]

GSM1149962

[15]

GSM1149963

[16]

GSM1149964

[17]

GSM1149965

[18]

GSM1149966

[19]

GSM1149967

[20]

GSM1149968

[21]

GSM1149969

[22]

GSM1149970

[23]

GSM1149971

[24]

GSM1149972

[25]

GSM1149973

[26]

GSM1149974

[27]

GSM1149975

[28]

GSM1149976

[29]

GSM1149977

[30]

GSM1149978

[31]

GSM1149979

[32]

GSM1149980

[33]

GSM1149981

[34]

GSM1149982

[35]

GSM1149983

[36]

GSM1149984

[37]

GSM1149985

[38]

GSM1149986

[39]

GSM1149987

[40]

GSM1149988

[41]

GSM1149989

[42]

GSM1149990

[43]

GSM1149991

[44]

GSM1149992

[45]

GSM1149993

[46]

GSM1149994

[47]

GSM1149995

[48]

GSM1149996

[49]

GSM1149997

[50]

GSM1149998

[51]

GSM1149999

[52]

GSM1150000

[53]

GSM1150001

[54]

GSM1150002

[55]

GSM1150003

[56]

GSM1150004

[57]

GSM1150005

[58]

GSM1150006

[59]

GSM1150007

[60]

GSM1150008

[61]

GSM1150009

[62]

GSM1150010

[63]

GSM1150011

[64]

GSM1150012

[65]

GSM1150013

[66]

GSM1150014

[67]

GSM1150015

[68]

GSM1150016

[69]

GSM1150017

[70]

GSM1150018

[71]

GSM1150019

[72]

GSM1150020

[73]

GSM1150021

[74]

GSM1150022

[75]

GSM1150023

[76]

GSM1150024

[77]

GSM1150025

[78]

GSM1150026

[79]

GSM1150027

[80]

GSM1150028

[81]

GSM1150029

[82]

GSM1150030

[83]

GSM1150031

[84]

GSM1150032

[85]

GSM1150033

[86]

GSM1150034

[87]

GSM1150035

[88]

GSM1150036

[89]

GSM1150037

[90]

GSM1150038

[91]

GSM1150039

[92]

GSM1150040

[93]

GSM1150041

[94]

GSM1150042

[95]

GSM1150043

[96]

GSM1150044

[97]

GSM1150045

[98]

GSM1150046

[99]

GSM1150047

[100]

GSM1150048

[101]

GSM1150049

[102]

GSM1150050

[103]

GSM1150051

[104]

GSM1150052

[105]

GSM1150053

[106]

GSM1150054

[107]

GSM1150055

[108]

GSM1150056

[109]

GSM1150057

[110]

GSM1150058

[111]

GSM1150059

[112]

GSM1150060

[113]

GSM1150061

[114]

GSM1150062

[115]

GSM1150063

[116]

GSM1150064

[117]

GSM1150065

[118]

GSM1150066

[119]

GSM1150067

[120]

GSM1150068

[121]

GSM1150069

[122]

GSM1150070

[123]

GSM1150071

[124]

GSM1150072

[125]

GSM1150073

[126]

GSM1150074

[127]

GSM1150075

[128]

GSM1150076

[129]

GSM1150077

[130]

GSM1150078

[131]

GSM1150079

[132]

GSM1150080

[133]

GSM1150081

[134]

GSM1150082

[135]

GSM1150083

[136]

GSM1150084

[137]

GSM1150085

[138]

GSM1150086

[139]

GSM1150087

[140]

GSM1150088

[141]

GSM1150089

[142]

GSM1150090

[143]

GSM1150091

[144]

GSM1150092

[145]

GSM1150093

[146]

GSM1150094

[147]

GSM1150095

[148]

GSM1150096

[149]

GSM1150097

[150]

GSM1150098

[151]

GSM1150099

[152]

GSM1150100

[153]

GSM1150101

[154]

GSM1150102

[155]

GSM1150103

[156]

GSM1150104

[157]

GSM1150105

[158]

GSM1150106

[159]

GSM1150107

[160]

GSM1150108

[161]

GSM1150109

[162]

GSM1150110

[163]

GSM1150111

[164]

GSM1150112

[165]

GSM1150113

[166]

GSM1150114

[167]

GSM1150115

[168]

GSM1150116

[169]

GSM1150117

[170]

GSM1150118

[171]

GSM1150119

[172]

GSM1150120

[173]

GSM1150121

[174]

GSM1150122

[175]

GSM1150123

[176]

GSM1150124

[177]

GSM1150125

[178]

GSM1150126

[179]

GSM1150127

[180]

GSM1150128

[181]

GSM1150129

[182]

GSM1150130

[183]

GSM1150131

[184]

GSM1150132

[185]

GSM1150133

[186]

GSM1150134

[187]

GSM1150135

[188]

GSM1150136

[189]

GSM1150137

[190]

GSM1150138

[191]

GSM1150139

[192]

GSM1150140

[193]

GSM1150141

[194]

GSM1150142

[195]

GSM1150143

[196]

GSM1150144

[197]

GSM1150145

[198]

GSM1150146

[199]

GSM1150147

[200]

GSM1150148

[201]

GSM1150149

[202]

GSM1150150

[203]

GSM1150151

[204]

GSM1150152

[205]

GSM1150153

[206]

GSM1150154

[207]

GSM1150155

[208]

GSM1150156

[209]

GSM1150157

[210]

GSM1150158

[211]

GSM1150159

[212]

GSM1150160

[213]

GSM1150161

[214]

GSM1150162

[215]

GSM1150163

[216]

GSM1150164

[217]

GSM1150165

[218]

GSM1150166

[219]

GSM1150167

[220]

GSM1150168

[221]

GSM1150169

[222]

GSM1150170

[223]

GSM1150171

[224]

GSM1150172

[225]

GSM1150173

[226]

GSM1150174

[227]

GSM1150175

[228]

GSM1150176

[229]

GSM1150177

[230]

GSM1150178

[231]

GSM1150179

[232]

GSM1150180

[233]

GSM1150181

[234]

GSM1150182

[235]

GSM1150183

[236]

GSM1150184

[237]

GSM1150185

[238]

GSM1150186

[239]

GSM1150187

[240]

GSM1150188

[241]

GSM1150189

[242]

GSM1150190

[243]

GSM1150191

[244]

GSM1150192

[245]

GSM1150193

[246]

GSM1150194

[247]

GSM1150195

[248]

GSM1150196

[249]

GSM1150197

[250]

GSM1150198

[251]

GSM1150199

[252]

GSM1150200

[253]

GSM1150201

[254]

GSM1150202

[255]

GSM1150203

[256]

GSM1150204

[257]

GSM1150205

[258]

GSM1150206

[259]

GSM1150207

[260]

GSM1150208

[261]

GSM1150209

[262]

GSM1150210

[263]

GSM1150211

[264]

GSM1150212

[265]

GSM1150213

[266]

GSM1150214

[267]

GSM1150215

[268]

GSM1150216

[269]

GSM1150217

[270]

GSM1150218

[271]

GSM1150219

[272]

GSM1150220

[273]

GSM1150221

[274]

GSM1150222

[275]

GSM1150223

[276]

GSM1150224

[277]

GSM1150225

[278]

GSM1150226

[279]

GSM1150227

[280]

GSM1150228

[281]

GSM1150229

[282]

GSM1150230

[283]

GSM1150231

[284]

GSM1150232

[285]

GSM1150233

[286]

GSM1150234

[287]

GSM1150235

[288]

GSM1150236

[289]

GSM1150237

[290]

GSM1150238

[291]

GSM1150239

[292]

GSM1150240

[293]

GSM1150241

[294]

GSM1150242

[295]

GSM1150243

[296]

GSM1150244

[297]

GSM1150245

[298]

GSM1150246

[299]

GSM1150247

[300]

GSM1150248

[301]

GSM1150249

[302]

GSM1150250

[303]

GSM1150251

[304]

GSM1150252

[305]

GSM1150253

[306]

GSM1150254

[307]

GSM1150255

[308]

GSM1150256

[309]

GSM1150257

[310]

GSM1150258

[311]

GSM1150259

[312]

GSM1150260

[313]

GSM1150261

[314]

GSM1150262

[315]

GSM1150263

[316]

GSM1150264

[317]

GSM1150265

[318]

GSM1150266

[319]

GSM1150267

[320]

GSM1150268

[321]

GSM1150269

[322]

GSM1150270

[323]

GSM1150271

[324]

GSM1150272

[325]

GSM1150273

[326]

GSM1150274

[327]

GSM1150275

[328]

GSM1150276

[329]

GSM1150277

[330]

GSM1150278

[331]

GSM1150279

[332]

GSM1150280

[333]

GSM1150281

[334]

GSM1150282

[335]

GSM1150283

[336]

GSM1150284

[337]

GSM1150285

[338]

GSM1150286

[339]

GSM1150287

[340]

GSM1150288

[341]

GSM1150289

[342]

GSM1150290

[343]

GSM1150291

[344]

GSM1150292

[345]

GSM1150293

[346]

GSM1150294

[347]

GSM1150295

[348]

GSM1150296

[349]

GSM1150297

[350]

GSM1150298

[351]

GSM1150299

[352]

GSM1150300

[353]

GSM1150301

[354]

GSM1150302

[355]

GSM1150303

[356]

GSM1150304

[357]

GSM1150305

[358]

GSM1150306

[359]

GSM1150307

[360]

GSM1150308

[361]

GSM1150309

[362]

GSM1150310

[363]

GSM1150311

[364]

GSM1150312

[365]

GSM1150313

[366]

GSM1150314

[367]

GSM1150315

[368]

GSM1150316

[369]

GSM1150317

[370]

GSM1150318

[371]

GSM1150319

[372]

GSM1150321

[373]

GSM1150331

[374]

GSM1150332

[375]

GSM1150334

[376]

GSM1150336

[377]

GSM1150338

[378]

GSM1150339

[379]

GSM1150341

[380]

GSM1150343

[381]

GSM1150344

[382]

GSM1150346

[383]

GSM1150347

[384]

GSM1150349

[385]

GSM1150351

[386]

GSM1150352

[387]

GSM1150353

[388]

GSM1150354

[389]

GSM1150355

[390]

GSM1150356

[391]

GSM1150357

[392]

GSM1150358

[393]

GSM1150359

[394]

GSM1150360

[395]

GSM1150361

[396]

GSM1150362

[397]

GSM1150363

[398]

GSM1150364

[399]

GSM1150365

[400]

GSM1150366

[401]

GSM1150367

[402]

GSM1150368

[403]

GSM1150369

[404]

GSM1150370

[405]

GSM1150371

[406]

GSM1150372

[407]

GSM1150373

[408]

GSM1150374

[409]

GSM1150375

[410]

GSM1150376

[411]

GSM1150377

[412]

GSM1150378

[413]

GSM1150379

[414]

GSM1150380

[415]

GSM1150381

[416]

GSM1150382

[417]

GSM1150383

[418]

GSM1150384

[419]

GSM1150385

[420]

GSM1150386

[421]

GSM1150387

[422]

GSM1150388

[423]

GSM1150389

[424]

GSM1150390

[425]

GSM1150391

[426]

GSM1150392

[427]

GSM1150393

[428]

GSM1150394

[429]

GSM1150395

[430]

GSM1150396

[431]

GSM1150397

[432]

GSM1150398

[433]

GSM1150399

[434]

GSM1150400

[435]

GSM1150401

[436]

GSM1150402

[437]

GSM1150403

[438]

GSM1150404

[439]

GSM1150405

[440]

GSM1150406

[441]

GSM1150407

[442]

GSM1150408

[443]

GSM1150409

[444]

GSM1150410

[445]

GSM1150411

[446]

GSM1150412

[447]

GSM1150413

[448]

GSM1150414

[449]

GSM1150415

[450]

GSM1150416

[451]

GSM1150417

[452]

GSM1150418

[453]

GSM1150419

[454]

GSM1150420

[455]

GSM1150421

[456]

GSM1150422

[457]

GSM1150423

[458]

GSM1150424

[459]

GSM1150425

[460]

GSM1150426

[461]

GSM1150427

[462]

GSM1150428

[463]

GSM1150429

[464]

GSM1150430

[465]

GSM1150431

[466]

GSM1150432

[467]

GSM1150433

[468]

GSM1150434

[469]

GSM1150435

[470]

GSM1150436

[471]

GSM1150437

[472]

GSM1150438

[473]

GSM1150439

[474]

GSM1150440

[475]

GSM1150441

[476]

GSM1150442

[477]

GSM1150443

[478]

GSM1150444

[479]

GSM1150445

[480]

GSM1150446

[481]

GSM1150447

[482]

GSM1150448

[483]

GSM1150449

[484]

GSM1150450

[485]

GSM1150451

[486]

GSM1150452

[487]

GSM1150453

[488]

GSM1150454

[489]

GSM1150455

[490]

GSM1150456

[491]

GSM1150457

[492]

GSM1150458

[493]

GSM1150459

[494]

GSM1150460

[495]

GSM1150461

[496]

GSM1150462

[497]

GSM1150463

[498]

GSM1150464

[499]

GSM1150465

[500]

GSM1150466

[501]

GSM1150467

[502]

GSM1150468

[503]

GSM1150469

[504]

GSM1150470

[505]

GSM1150471

[506]

GSM1150472

[507]

GSM1150473

[508]

GSM1150474

[509]

GSM1150475

[510]

GSM1150476

[511]

GSM1150477

[512]

GSM1150478

[513]

GSM1150479

[514]

GSM1150480

[515]

GSM1150481

[516]

GSM1150482

[517]

GSM1150483

[518]

GSM1150484

[519]

GSM1150485

[520]

GSM1150486

[521]

GSM1150487

[522]

GSM1150488

[523]

GSM1150489

[524]

GSM1150490

[525]

GSM1150491

[526]

GSM1150492

[527]

GSM1150493

[528]

GSM1150494

[529]

GSM1150495

[530]

GSM1150496

[531]

GSM1150497

[532]

GSM1150498

[533]

GSM1150499

[534]

GSM1150500

[535]

GSM1150501

[536]

GSM1150502

[537]

GSM1150503

[538]

GSM1150504

[539]

GSM1150505

[540]

GSM1150506

[541]

GSM1150507

[542]

GSM1150508

[543]

GSM1150509

[544]

GSM1150510

[545]

GSM1150511

[546]

GSM1150512

[547]

GSM1150513

[548]

GSM1150514

[549]

GSM1150515

[550]

GSM1150516

[551]

GSM1150517

[552]

GSM1150518

[553]

GSM1150519

[554]

GSM1150520

[555]

GSM1150521

[556]

GSM1150522

[557]

GSM1150523

[558]

GSM1150524

[559]

GSM1150525

[560]

GSM1150526

[561]

GSM1150527

[562]

GSM1150528

[563]

GSM1150529

[564]

GSM1150530

[565]

GSM1150531

[566]

GSM1150532

[567]

GSM1150533

[568]

GSM1150534

[569]

GSM1150535

[570]

GSM1150536

[571]

GSM1150537

[572]

GSM1150538

[573]

GSM1150539

[574]

GSM1150540

[575]

GSM1150541

[576]

GSM1150542

[577]

GSM1150543

[578]

GSM1150544

[579]

GSM1150545

[580]

GSM1150546

[581]

GSM1150547

sample_count

582

group_sizes

null

group_sizes_basis

null

platform

6480;14550

taxon

Homo sapiens

title

Gene expression profiling of chronic lung disease for the Lung Genomics Research Consortium

resolution_checked_at

2026-11-01T17:30:42Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

[10] object · 15 fields

data:geo:GSE70866

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE70866

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 196 items

[0]

GSM1820719

[1]

GSM1820720

[2]

GSM1820721

[3]

GSM1820722

[4]

GSM1820723

[5]

GSM1820724

[6]

GSM1820725

[7]

GSM1820726

[8]

GSM1820727

[9]

GSM1820728

[10]

GSM1820729

[11]

GSM1820730

[12]

GSM1820731

[13]

GSM1820732

[14]

GSM1820733

[15]

GSM1820734

[16]

GSM1820735

[17]

GSM1820736

[18]

GSM1820737

[19]

GSM1820738

[20]

GSM1820739

[21]

GSM1820740

[22]

GSM1820741

[23]

GSM1820742

[24]

GSM1820743

[25]

GSM1820744

[26]

GSM1820745

[27]

GSM1820746

[28]

GSM1820747

[29]

GSM1820748

[30]

GSM1820749

[31]

GSM1820750

[32]

GSM1820751

[33]

GSM1820752

[34]

GSM1820753

[35]

GSM1820754

[36]

GSM1820755

[37]

GSM1820756

[38]

GSM1820757

[39]

GSM1820758

[40]

GSM1820759

[41]

GSM1820760

[42]

GSM1820761

[43]

GSM1820762

[44]

GSM1820763

[45]

GSM1820764

[46]

GSM1820765

[47]

GSM1820766

[48]

GSM1820767

[49]

GSM1820768

[50]

GSM1820769

[51]

GSM1820770

[52]

GSM1820771

[53]

GSM1820772

[54]

GSM1820773

[55]

GSM1820774

[56]

GSM1820775

[57]

GSM1820776

[58]

GSM1820777

[59]

GSM1820778

[60]

GSM1820779

[61]

GSM1820780

[62]

GSM1820781

[63]

GSM1820782

[64]

GSM1820783

[65]

GSM1820784

[66]

GSM1820785

[67]

GSM1820786

[68]

GSM1820787

[69]

GSM1820788

[70]

GSM1820789

[71]

GSM1820790

[72]

GSM1820791

[73]

GSM1820792

[74]

GSM1820793

[75]

GSM1820794

[76]

GSM1820795

[77]

GSM1820796

[78]

GSM1820797

[79]

GSM1820798

[80]

GSM1820799

[81]

GSM1820800

[82]

GSM1820801

[83]

GSM1820802

[84]

GSM1820803

[85]

GSM1820804

[86]

GSM1820805

[87]

GSM1820806

[88]

GSM1820807

[89]

GSM1820808

[90]

GSM1820809

[91]

GSM1820810

[92]

GSM1820811

[93]

GSM1820812

[94]

GSM1820813

[95]

GSM1820814

[96]

GSM1820815

[97]

GSM1820816

[98]

GSM1820817

[99]

GSM1820818

[100]

GSM1820819

[101]

GSM1820820

[102]

GSM1820821

[103]

GSM1820822

[104]

GSM1820823

[105]

GSM1820824

[106]

GSM1820825

[107]

GSM1820826

[108]

GSM1820827

[109]

GSM1820828

[110]

GSM1820829

[111]

GSM1820830

[112]

GSM1820831

[113]

GSM1820832

[114]

GSM1820833

[115]

GSM1820834

[116]

GSM1820835

[117]

GSM1820836

[118]

GSM1820837

[119]

GSM1820838

[120]

GSM1820839

[121]

GSM1820840

[122]

GSM1820841

[123]

GSM1820842

[124]

GSM1820843

[125]

GSM1820844

[126]

GSM1820845

[127]

GSM1820846

[128]

GSM1820847

[129]

GSM1820848

[130]

GSM1820849

[131]

GSM1820850

[132]

GSM1820851

[133]

GSM1820852

[134]

GSM1820853

[135]

GSM1820854

[136]

GSM1820855

[137]

GSM1820856

[138]

GSM1820857

[139]

GSM1820858

[140]

GSM1820859

[141]

GSM1820860

[142]

GSM1820861

[143]

GSM1820862

[144]

GSM1820863

[145]

GSM1820864

[146]

GSM1820865

[147]

GSM1820866

[148]

GSM1820867

[149]

GSM1820868

[150]

GSM1820869

[151]

GSM1820870

[152]

GSM1820871

[153]

GSM1820872

[154]

GSM1820873

[155]

GSM1820874

[156]

GSM1820875

[157]

GSM1820876

[158]

GSM1820877

[159]

GSM1820878

[160]

GSM1820879

[161]

GSM1820880

[162]

GSM1820881

[163]

GSM1820882

[164]

GSM1820883

[165]

GSM1820884

[166]

GSM1820885

[167]

GSM1820886

[168]

GSM1820887

[169]

GSM1820888

[170]

GSM1820889

[171]

GSM1820890

[172]

GSM1820891

[173]

GSM1820892

[174]

GSM1820893

[175]

GSM1820894

[176]

GSM1820895

[177]

GSM1820896

[178]

GSM1820897

[179]

GSM1820898

[180]

GSM1820899

[181]

GSM1820900

[182]

GSM1820901

[183]

GSM1820902

[184]

GSM1820903

[185]

GSM1820904

[186]

GSM1820905

[187]

GSM1820906

[188]

GSM1820907

[189]

GSM1820908

[190]

GSM1820909

[191]

GSM1820910

[192]

GSM1820911

[193]

GSM1820912

[194]

GSM1820913

[195]

GSM1820914

sample_count

196

group_sizes

null

group_sizes_basis

null

platform

17077;14550

taxon

Homo sapiens

title

BAL cell gene expression is predictive of Mortality in Idiopathic Pulmonary Fibrosis and enriched for Genes of Airway Basal Cells (II)

resolution_checked_at

2026-11-01T17:30:42Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

[11] object · 15 fields

data:geo:GSE93606

role

raw

format

geo-series

media_type

application/vnd.ncbi.geo-series+json

uri

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606

sha256

null

bytes

null

access

open

state

resolved

reader

null

reader_status

reader_required

identifier

GSE93606

version

null

note

structure object · 15 fields

repository

GEO

access_route

GEO accession URL

access_statement_verbatim

access_statement_kind

data_availability_statement

sample_accessions array · 174 items

[0]

GSM2458563

[1]

GSM2458564

[2]

GSM2458565

[3]

GSM2458566

[4]

GSM2458567

[5]

GSM2458568

[6]

GSM2458569

[7]

GSM2458570

[8]

GSM2458571

[9]

GSM2458572

[10]

GSM2458573

[11]

GSM2458574

[12]

GSM2458575

[13]

GSM2458576

[14]

GSM2458577

[15]

GSM2458578

[16]

GSM2458579

[17]

GSM2458580

[18]

GSM2458581

[19]

GSM2458582

[20]

GSM2458583

[21]

GSM2458584

[22]

GSM2458585

[23]

GSM2458586

[24]

GSM2458587

[25]

GSM2458588

[26]

GSM2458589

[27]

GSM2458590

[28]

GSM2458591

[29]

GSM2458592

[30]

GSM2458593

[31]

GSM2458594

[32]

GSM2458595

[33]

GSM2458596

[34]

GSM2458597

[35]

GSM2458598

[36]

GSM2458599

[37]

GSM2458600

[38]

GSM2458601

[39]

GSM2458602

[40]

GSM2458603

[41]

GSM2458604

[42]

GSM2458605

[43]

GSM2458606

[44]

GSM2458607

[45]

GSM2458608

[46]

GSM2458609

[47]

GSM2458610

[48]

GSM2458611

[49]

GSM2458612

[50]

GSM2458613

[51]

GSM2458614

[52]

GSM2458615

[53]

GSM2458616

[54]

GSM2458617

[55]

GSM2458618

[56]

GSM2458619

[57]

GSM2458620

[58]

GSM2458621

[59]

GSM2458622

[60]

GSM2458623

[61]

GSM2458624

[62]

GSM2458625

[63]

GSM2458626

[64]

GSM2458627

[65]

GSM2458628

[66]

GSM2458629

[67]

GSM2458630

[68]

GSM2458631

[69]

GSM2458632

[70]

GSM2458633

[71]

GSM2458634

[72]

GSM2458635

[73]

GSM2458636

[74]

GSM2458637

[75]

GSM2458638

[76]

GSM2458639

[77]

GSM2458640

[78]

GSM2458641

[79]

GSM2458642

[80]

GSM2458643

[81]

GSM2458644

[82]

GSM2458645

[83]

GSM2458646

[84]

GSM2458647

[85]

GSM2458648

[86]

GSM2458649

[87]

GSM2458650

[88]

GSM2458651

[89]

GSM2458652

[90]

GSM2458653

[91]

GSM2458654

[92]

GSM2458655

[93]

GSM2458656

[94]

GSM2458657

[95]

GSM2458658

[96]

GSM2458659

[97]

GSM2458660

[98]

GSM2458661

[99]

GSM2458662

[100]

GSM2458663

[101]

GSM2458664

[102]

GSM2458665

[103]

GSM2458666

[104]

GSM2458667

[105]

GSM2458668

[106]

GSM2458669

[107]

GSM2458670

[108]

GSM2458671

[109]

GSM2458672

[110]

GSM2458673

[111]

GSM2458674

[112]

GSM2458675

[113]

GSM2458676

[114]

GSM2458677

[115]

GSM2458678

[116]

GSM2458679

[117]

GSM2458680

[118]

GSM2458681

[119]

GSM2458682

[120]

GSM2458683

[121]

GSM2458684

[122]

GSM2458685

[123]

GSM2458686

[124]

GSM2458687

[125]

GSM2458688

[126]

GSM2458689

[127]

GSM2458690

[128]

GSM2458691

[129]

GSM2458692

[130]

GSM2458693

[131]

GSM2458694

[132]

GSM2458695

[133]

GSM2458696

[134]

GSM2458697

[135]

GSM2458698

[136]

GSM2458699

[137]

GSM2458700

[138]

GSM2458701

[139]

GSM2458702

[140]

GSM2458703

[141]

GSM2458704

[142]

GSM2458705

[143]

GSM2458706

[144]

GSM2458707

[145]

GSM2458708

[146]

GSM2458709

[147]

GSM2458710

[148]

GSM2458711

[149]

GSM2458712

[150]

GSM2458713

[151]

GSM2458714

[152]

GSM2458715

[153]

GSM2458716

[154]

GSM2458717

[155]

GSM2458718

[156]

GSM2458719

[157]

GSM2458720

[158]

GSM2458721

[159]

GSM2458722

[160]

GSM2458723

[161]

GSM2458724

[162]

GSM2458725

[163]

GSM2458726

[164]

GSM2458727

[165]

GSM2458728

[166]

GSM2458729

[167]

GSM2458730

[168]

GSM2458731

[169]

GSM2458732

[170]

GSM2458733

[171]

GSM2458734

[172]

GSM2458735

[173]

GSM2458736

sample_count

174

group_sizes

null

group_sizes_basis

null

platform

11532

taxon

Homo sapiens

title

Host-Microbial interactions in Idiopathic Pulmonary Fibrosis

resolution_checked_at

2026-11-01T17:30:42Z

resolution_check

identifier_resolution_only_no_download_no_licence_read

downloaded

false

licence_read

false

gaps array · 22 items

[0]

asset:data:geo:GSE110147 not downloaded

[1]

asset:data:geo:GSE110147 licence not read

[2]

asset:data:geo:GSE132607 not downloaded

[3]

asset:data:geo:GSE132607 licence not read

[4]

asset:data:geo:GSE141259 not downloaded

[5]

asset:data:geo:GSE141259 licence not read

[6]

asset:data:geo:GSE27957 not downloaded

[7]

asset:data:geo:GSE27957 licence not read

[8]

asset:data:geo:GSE28042 not downloaded

[9]

asset:data:geo:GSE28042 licence not read

[10]

asset:data:geo:GSE32537 not downloaded

[11]

asset:data:geo:GSE32537 licence not read

[12]

asset:data:geo:GSE33566 not downloaded

[13]

asset:data:geo:GSE33566 licence not read

[14]

asset:data:geo:GSE38958 not downloaded

[15]

asset:data:geo:GSE38958 licence not read

[16]

asset:data:geo:GSE47460 not downloaded

[17]

asset:data:geo:GSE47460 licence not read

[18]

asset:data:geo:GSE70866 not downloaded

[19]

asset:data:geo:GSE70866 licence not read

[20]

asset:data:geo:GSE93606 not downloaded

[21]

asset:data:geo:GSE93606 licence not read

analysis object · 4 fields

state

partial

methods array · 7 items

[0] object · 10 fields

method-1

family

regression_modelling

specific

logistic

label

Regression modelling

dsl_operations array · 1 item

[0]

glm_logit_fit

missing_operations array · 0 items

expressible

true

parameters object · 0 fields

data_shapes array · 1 item

[0]

predictors_and_outcome

evidence object · 3 fields

score

band

verbatim

quote

[1] object · 10 fields

method-2

family

survival_analysis

specific

cox_proportional_hazards

label

Survival analysis

dsl_operations array · 1 item

[0]

cox_ph

missing_operations array · 0 items

expressible

true

parameters object · 1 field

hazard_ratio

The hazard ratio (HR) for the statistica

data_shapes array · 1 item

[0]

time_to_event_with_censoring

evidence object · 3 fields

score

0.8

band

high

quote

Cox regression

[2] object · 10 fields

method-3

family

principal_component_analysis

specific

pca

label

Principal component analysis

dsl_operations array · 1 item

[0]

pca_fit

missing_operations array · 0 items

expressible

true

parameters object · 0 fields

data_shapes array · 1 item

[0]

wide_numeric_matrix

evidence object · 3 fields

score

0.8

band

high

quote

Principal component analysis

[3] object · 10 fields

method-4

family

correlation_analysis

specific

pearson

label

Correlation analysis

dsl_operations array · 1 item

[0]

pearson_r

missing_operations array · 0 items

expressible

true

parameters object · 0 fields

data_shapes array · 1 item

[0]

paired_numeric_columns

evidence object · 3 fields

score

0.7

band

medium

quote

Pearson correlation

[4] object · 10 fields

method-5

family

network_analysis

specific

ppi_network

label

Network / pathway analysis

dsl_operations array · 3 items

[0]

build_graph

[1]

centrality_scores

[2]

pathway_enrich

missing_operations array · 0 items

expressible

true

parameters object · 0 fields

data_shapes array · 1 item

[0]

edge_list

evidence object · 3 fields

score

0.7

band

medium

quote

protein-protein interaction

[5] object · 10 fields

method-6

family

diagnostic_evaluation

specific

roc

label

Diagnostic test evaluation

dsl_operations array · 6 items

[0]

confusion_counts

[1]

roc_curve

[2]

sensitivity_specificity

[3]

solve_confusion_matrix

[4]

classification_metrics

[5]

published_precision_envelope

missing_operations array · 0 items

expressible

true

parameters object · 0 fields

data_shapes array · 1 item

[0]

reference_standard_and_test

evidence object · 3 fields

score

0.8

band

high

quote

ROC curve

[6] object · 10 fields

method-7

family

contingency_analysis

specific

chi_square

label

Categorical (contingency table) analysis

dsl_operations array · 1 item

[0]

chi_square_test

missing_operations array · 0 items

expressible

true

parameters object · 0 fields

data_shapes array · 1 item

[0]

categorical_cross_tabulation

evidence object · 3 fields

score

0.8

band

high

quote

chi-square

targets array · 0 items

gaps array · 1 item

[0]

method.reader_differs_from_extractor

capability object · 3 fields

state

complete

requirements array · 1 item

[0] object · 6 fields

capability_id

capability:computational_analysis

label

Computational analysis platform

assay_families array · 9 items

[0]

meta_analysis

[1]

machine_learning

[2]

survival_analysis

[3]

statistical_regression

[4]

pca

[5]

molecular_docking

[6]

network_analysis

[7]

differential_expression

[8]

gwas

availability_state

owned

tier_unlocked

candidate

Automated Assays Laravel application and simulated adapters

gaps array · 0 items

readiness object · 8 fields

state

complete

tier

blocking_axis

none

blocked_on

nothing:replicable_now

axes object · 3 fields

method object · 5 fields

tier

expressible

true

required_operations array · 1 item

[0]

glm_logit_fit

missing_operations array · 0 items

basis

The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: logistic.

capability object · 4 fields

tier

capability_id

capability:computational_analysis

availability_state

owned

basis

The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.

data object · 6 fields

tier

reachable

true

accessions array · 11 items

[0]

GSE32537

[1]

GSE47460

[2]

GSE110147

[3]

GSE141259

[4]

GSE93606

[5]

GSE27957

[6]

GSE28042

[7]

GSE38958

[8]

GSE132607

[9]

GSE33566

[10]

GSE70866

resolved_accessions array · 11 items

[0]

GSE32537

[1]

GSE47460

[2]

GSE110147

[3]

GSE141259

[4]

GSE93606

[5]

GSE27957

[6]

GSE28042

[7]

GSE38958

[8]

GSE132607

[9]

GSE33566

[10]

GSE70866

statements array · 1 item

[0]

basis

The paper names GSE32537, GSE47460, GSE110147, GSE141259, GSE93606, GSE27957, GSE28042, GSE38958, GSE132607, GSE33566, GSE70866 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read.

can_run object · 3 fields

dsl_operations array · 1 item

[0]

glm_logit_fit

assets array · 2 items

[0]

source:pmid:34880861

[1]

data:geo:GSE110147

steps array · 1 item

[0]

run_analysis

must_build object · 5 fields

dsl_operations array · 0 items

converters array · 0 items

readers array · 0 items

capabilities array · 0 items

data_gaps array · 1 item

[0]

data:geo:GSE110147

gaps array · 0 items

review object · 5 fields

state

partial

machine_critique object · 5 fields

kind

extraction_review

reader object · 5 fields

model

MiniMax-M3.1-Flash

provider

minimax

provider_family

minimax

read_at

2026-11-01T17:10:40Z

independence

single_reader

evidence_check object · 2 fields

method

verbatim

availability

verbatim

calls

usage object · 3 fields

prompt_tokens

15620

completion_tokens

3968

cached_tokens

128

human_critique

null

stages array · 1 item

[0] object · 4 fields

extraction

state

complete

reader

MiniMax-M3.1-Flash

provider

minimax

gaps array · 3 items

[0]

review.independent_reader

[1]

review.machine_critique

[2]

review.human_critique

execution object · 5 fields

state

absent

status

not_run

mode

null

runs array · 0 items

gaps array · 1 item

[0]

execution.not_run

provenance object · 7 fields

entities array · 3 items

[0] object · 3 fields

pmid:34880861

type

paper

label

pmid:34880861

[1] object · 3 fields

source:pmid:34880861

type

manuscript

label

PMID 34880861 full text

[2] object · 3 fields

data:geo:GSE110147

type

dataset

label

GEO GSE110147

activities array · 3 items

[0] object · 4 fields

activity-reading-sci-2026-11-01

type

classification

used array · 3 items

[0] object · 3 fields

pmid:34880861

type

paper

label

pmid:34880861

[1] object · 3 fields

source:pmid:34880861

type

manuscript

label

PMID 34880861 full text

[2] object · 3 fields

data:geo:GSE110147

type

dataset

label

GEO GSE110147

agent

agent:corpus-assay-engine

[1] object · 4 fields

activity-read-34880861

type

extraction

used array · 1 item

[0]

source:pmid:34880861

agent

agent:minimax-reader

[2] object · 4 fields

activity-resolve-GSE110147

type

accession_resolution

used array · 1 item

[0]

data:geo:GSE110147

agent

agent:corpus-assay-engine

agents array · 2 items

[0] object · 3 fields

agent:corpus-assay-engine

type

software

label

Corpus assay engine

[1] object · 3 fields

agent:minimax-reader

type

software

label

MiniMax literature reader

source_run_id

reading-sci-2026-11-01

dsl_catalogue_fingerprint

343fb30756ba6ec3

capability_table_fingerprint

2cb3e42f047d2ecf

snapshot_id

ba34b49490d9bfaf

lineage object · 4 fields

parent_id

pmid:34880861

parent_hash

sha256:3dbfd914fddd05a7943a8f2cf5912498bb2aa43d174eecce3b7379703daf246b

fork_of

null

generation

gaps array · 27 items

[0]

asset:data:geo:GSE110147 licence not read

[1]

asset:data:geo:GSE110147 not downloaded

[2]

asset:data:geo:GSE132607 licence not read

[3]

asset:data:geo:GSE132607 not downloaded

[4]

asset:data:geo:GSE141259 licence not read

[5]

asset:data:geo:GSE141259 not downloaded

[6]

asset:data:geo:GSE27957 licence not read

[7]

asset:data:geo:GSE27957 not downloaded

[8]

asset:data:geo:GSE28042 licence not read

[9]

asset:data:geo:GSE28042 not downloaded

[10]

asset:data:geo:GSE32537 licence not read

[11]

asset:data:geo:GSE32537 not downloaded

[12]

asset:data:geo:GSE33566 licence not read

[13]

asset:data:geo:GSE33566 not downloaded

[14]

asset:data:geo:GSE38958 licence not read

[15]

asset:data:geo:GSE38958 not downloaded

[16]

asset:data:geo:GSE47460 licence not read

[17]

asset:data:geo:GSE47460 not downloaded

[18]

asset:data:geo:GSE70866 licence not read

[19]

asset:data:geo:GSE70866 not downloaded

[20]

asset:data:geo:GSE93606 licence not read

[21]

asset:data:geo:GSE93606 not downloaded

[22]

execution.not_run

[23]

method.reader_differs_from_extractor

[24]

review.human_critique

[25]

review.independent_reader

[26]

review.machine_critique

assays array · 3 items

[0] object · 11 fields

role

data_generation

definition_id

scrna_seq

definition_version

99e1195c7d6f

definition_digest

null

required_operations array · 0 items

support_state

unsupported

source_hashes object · 1 field

assay_lexicon

99e1195c7d6f

confidence

0.99

evidence array · 4 items

[0]

Materials and Methods Analysis of scRNA-seq Data The computational analysis of the GSE14

[1]

nsform () function was used to normalize the scRNA-seq data. Principal component analysis (PCA) was

[2]

ine in FVC >10% over six months period). The scRNA-seq Data Analysis of CD247 According to the Lung

[3]

ells and NK cells in the human lung based on scRNA-seq data (37) ( Supplementary Figure 5A ). In th

order_basis

paper_text_order:1995

assay:1

[1] object · 11 fields

role

data_generation

definition_id

animal_model

definition_version

99e1195c7d6f

definition_digest

null

required_operations array · 0 items

support_state

partial

source_hashes object · 1 field

assay_lexicon

99e1195c7d6f

confidence

0.99

evidence array · 3 items

[0]

A-seq data (37) ( Supplementary Figure 5A ). In the mouse lung, Cd247 is also mainly expressed by the

[1]

ata (37) ( Supplementary Figure 5A ). In the mouse lung, Cd247 is also mainly expressed by the

[2]

tabase (https://www.lungmap.net/), (B–D) the mouse lung (GSE141259 dataset).Click here for addi

order_basis

paper_text_order:6417

assay:2

[2] object · 11 fields

role

analysis

definition_id

regression_modelling

definition_version

f2132e96ae6c7a4e

definition_digest

null

required_operations array · 1 item

[0]

glm_logit_fit

support_state

supported

source_hashes object · 1 field

dsl_catalogue

f2132e96ae6c7a4e

confidence

evidence array · 1 item

[0]

order_basis

consumes_earlier_output

assay:3

Complete file

{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:34880861", "kind": "science-record", "revision": 5, "content_hash": "sha256:aaf6a0608e47736b665b0568986f0f58a06c6947cafc085aa5de698b88fc57be", "created_at": "2026-11-01T17:36:35Z", "updated_at": "2026-11-01T22:48:01Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "CD247, a Potential T Cell-Derived Disease Severity and Prognostic Biomarker in Patients With Idiopathic Pulmonary Fibrosis.", "doi": "10.3389/fimmu.2021.762594", "pmid": "34880861", "authors": ["Yupeng Li", "Shibin Chen", "Xincheng Li", "Xue Wang", "Huiwen Li", "Shangwei Ning", "Hong Chen"], "journal": "Frontiers in immunology", "year": 2021, "abstract": "Background: Idiopathic pulmonary fibrosis (IPF) has high mortality worldwide. The CD247 molecule (CD247, as known as T-cell surface glycoprotein CD3 zeta chain) has been reported as a susceptibility locus in systemic sclerosis, but its correlation with IPF remains unclear.\nMethods: Datasets were acquired by researching the Gene Expression Omnibus (GEO). CD247 was identified as the hub gene associated with percent predicted diffusion capacity of the lung for carbon monoxide (Dlco% predicted) and prognosis according to Pearson correlation, logistic regression, and survival analysis.\nResults: CD247 is significantly downregulated in patients with IPF compared with controls in both blood and lung tissue samples. Moreover, CD247 is significantly positively associated with Dlco% predicted in blood and lung tissue samples. Patients with low-expression CD247 had shorter transplant-free survival (TFS) time and more composite end-point events (CEP, death, or decline in FVC >10% over a 6-month period) compared with patients with high-expression CD247 (blood). Moreover, in the follow-up 1st, 3rd, 6th, and 12th months, low expression of CD247 was still the risk factor of CEP in the GSE93606 dataset (blood). Thirteen genes were found to interact with CD247 according to the protein-protein interaction network, and the 14 genes including CD247 were associated with the functions of T cells and natural killer (NK) cells such as PD-L1 expression and PD-1 checkpoint pathway and NK cell-mediated cytotoxicity. Furthermore, we also found that a low expression of CD247 might be associated with a lower activity of TIL (tumor-infiltrating lymphocytes), checkpoint, and cytolytic activity and a higher activity of macrophages and neutrophils.\nConclusion: These results imply that CD247 may be a potential T cell-derived disease severity and prognostic biomarker for IPF.", "claims": [{"id": "claim-method", "statement": "CD247 was identified as the hub gene associated with percent predicted diffusion capacity of the lung for carbon monoxide (Dlco% predicted) and prognosis according to Pearson correlation, logistic regression, and survival analysis.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:34880861", "locator": "sections[0] \"Abstract\" paragraph 2", "quote": "CD247 was identified as the hub gene associated with percent predicted diffusion capacity of the lung for carbon monoxide (Dlco% predicted) and prognosis according to Pearson correlation, logistic regression, and survival analysis."}], "state": "complete"}, {"id": "claim-data-access", "statement": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:34880861", "locator": "sections[16] \"Data Availability Statement\" paragraph 2", "quote": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 ."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": "", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:34880861"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE110147"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE110147"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:34880861", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.3389/fimmu.2021.762594", "sha256": "sha256:61e9cce774049b29ef90cf05bd9db080c4fb43dc711b295843654cc8ff108e50", "bytes": 51492, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.3389/fimmu.2021.762594", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC8645971", "source": "europe_pmc_fulltext", "coverage": "whole_body", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:GSE110147", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE110147", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM2978752", "GSM2978753", "GSM2978754", "GSM2978755", "GSM2978756", "GSM2978757", "GSM2978758", "GSM2978759", "GSM2978760", "GSM2978761", "GSM2978762", "GSM2978763", "GSM2978764", "GSM2978765", "GSM2978766", "GSM2978767", "GSM2978768", "GSM2978769", "GSM2978770", "GSM2978771", "GSM2978772", "GSM2978773", "GSM2978774", "GSM2978775", "GSM2978776", "GSM2978777", "GSM2978778", "GSM2978779", "GSM2978780", "GSM2978781", "GSM2978782", "GSM2978783", "GSM2978784", "GSM2978785", "GSM2978786", "GSM2978787", "GSM2978788", "GSM2978789", "GSM2978790", "GSM2978791", "GSM2978792", "GSM2978793", "GSM2978794", "GSM2978795", "GSM2978796", "GSM2978797", "GSM2978798", "GSM2978799"], "sample_count": 48, "group_sizes": null, "group_sizes_basis": null, "platform": "6244", "taxon": "Homo sapiens", "title": "Gene expression profiling of idiopathic pulmonary fibrosis and non-specific interstitial pneumonia", "resolution_checked_at": "2026-11-01T17:30:42Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE132607", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE132607", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM3879744", "GSM3879745", "GSM3879746", "GSM3879747", "GSM3879748", "GSM3879749", "GSM3879750", "GSM3879751", "GSM3879752", "GSM3879753", "GSM3879754", "GSM3879755", "GSM3879756", "GSM3879757", "GSM3879758", "GSM3879759", "GSM3879760", "GSM3879761", "GSM3879762", "GSM3879763", "GSM3879764", "GSM3879765", "GSM3879766", "GSM3879767", "GSM3879768", "GSM3879769", "GSM3879770", "GSM3879771", "GSM3879772", "GSM3879773", "GSM3879774", "GSM3879775", "GSM3879776", "GSM3879777", "GSM3879778", "GSM3879779", "GSM3879780", "GSM3879781", "GSM3879782", "GSM3879783", "GSM3879784", "GSM3879785", "GSM3879786", "GSM3879787", "GSM3879788", "GSM3879789", "GSM3879790", "GSM3879791", "GSM3879792", "GSM3879793", "GSM3879794", "GSM3879795", "GSM3879796", "GSM3879797", "GSM3879798", "GSM3879799", "GSM3879800", "GSM3879801", "GSM3879802", "GSM3879803", "GSM3879804", "GSM3879805", "GSM3879806", "GSM3879807", "GSM3879808", "GSM3879809", "GSM3879810", "GSM3879811", "GSM3879812", "GSM3879813", "GSM3879814", "GSM3879815", "GSM3879816", "GSM3879817", "GSM3879818", "GSM3879819", "GSM3879820", "GSM3879821", "GSM3879822", "GSM3879823", "GSM3879824", "GSM3879825", "GSM3879826", "GSM3879827", "GSM3879828", "GSM3879829", "GSM3879830", "GSM3879831", "GSM3879832", "GSM3879833", "GSM3879834", "GSM3879835", "GSM3879836", "GSM3879837", "GSM3879838", "GSM3879839", "GSM3879840", "GSM3879841", "GSM3879842", "GSM3879843", "GSM3879844", "GSM3879845", "GSM3879846", "GSM3879847", "GSM3879848", "GSM3879849", "GSM3879850", "GSM3879851", "GSM3879852", "GSM3879853", "GSM3879854", "GSM3879855", "GSM3879856", "GSM3879857", "GSM3879858", "GSM3879859", "GSM3879860", "GSM3879861", "GSM3879862", "GSM3879863", "GSM3879864", "GSM3879865", "GSM3879866", "GSM3879867", "GSM3879868", "GSM3879869", "GSM3879870", "GSM3879871", "GSM3879872", "GSM3879873", "GSM3879874", "GSM3879875", "GSM3879876", "GSM3879877", "GSM3879878", "GSM3879879", "GSM3879880", "GSM3879881", "GSM3879882", "GSM3879883", "GSM3879884", "GSM3879885", "GSM3879886", "GSM3879887", "GSM3879888", "GSM3879889", "GSM3879890", "GSM3879891", "GSM3879892", "GSM3879893", "GSM3879894", "GSM3879895", "GSM3879896", "GSM3879897", "GSM3879898", "GSM3879899", "GSM3879900", "GSM3879901", "GSM3879902", "GSM3879903", "GSM3879904", "GSM3879905", "GSM3879906", "GSM3879907", "GSM3879908", "GSM3879909", "GSM3879910", "GSM3879911", "GSM3879912", "GSM3879913", "GSM3879914", "GSM3879915", "GSM3879916", "GSM3879917", "GSM3879918", "GSM3879919", "GSM3879920", "GSM3879921", "GSM3879922", "GSM3879923", "GSM3879924", "GSM3879925", "GSM3879926", "GSM3879927", "GSM3879928", "GSM3879929", "GSM3879930", "GSM3879931", "GSM3879932", "GSM3879933", "GSM3879934", "GSM3879935", "GSM3879936", "GSM3879937", "GSM3879938", "GSM3879939", "GSM3879940", "GSM3879941", "GSM3879942", "GSM3879943", "GSM3879944", "GSM3879945", "GSM3879946", "GSM3879947", "GSM3879948", "GSM3879949", "GSM3879950", "GSM3879951", "GSM3879952", "GSM3879953", "GSM3879954", "GSM3879955", "GSM3879956", "GSM3879957", "GSM3879958", "GSM3879959", "GSM3879960", "GSM3879961", "GSM3879962", "GSM3879963", "GSM3879964", "GSM3879965", "GSM3879966", "GSM3879967", "GSM3879968", "GSM3879969", "GSM3879970", "GSM3879971", "GSM3879972", "GSM3879973", "GSM3879974", "GSM3879975", "GSM3879976", "GSM3879977", "GSM3879978", "GSM3879979", "GSM3879980", "GSM3879981", "GSM3879982", "GSM3879983", "GSM3879984", "GSM3879985", "GSM3879986", "GSM3879987", "GSM3879988", "GSM3879989", "GSM3879990", "GSM3879991", "GSM3879992", "GSM3879993", "GSM3879994", "GSM3879995", "GSM3879996", "GSM3879997", "GSM3879998", "GSM3879999", "GSM3880000", "GSM3880001", "GSM3880002", "GSM3880003", "GSM3880004", "GSM3880005", "GSM3880006", "GSM3880007", "GSM3880008", "GSM3880009", "GSM3880010", "GSM3880011", "GSM3880012", "GSM3880013", "GSM3880014", "GSM3880015", "GSM3880016", "GSM3880017", "GSM3880018", "GSM3880019"], "sample_count": 276, "group_sizes": null, "group_sizes_basis": null, "platform": "15207", "taxon": "Homo sapiens", "title": "Longitudinal Blood Transcriptomic Changes Predict Lung Function Decline in Idiopathic Pulmonary Fibrosis", "resolution_checked_at": "2026-11-01T17:30:42Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE141259", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE141259", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM4200035", "GSM4200036", "GSM4200037", "GSM4200038", "GSM4200039", "GSM4200040", "GSM4200041", "GSM4200042", "GSM4200043", "GSM4200044", "GSM4200045", "GSM4200046", "GSM4200047", "GSM4200048", "GSM4200049", "GSM4200050", "GSM4200051", "GSM4200052", "GSM4200053", "GSM4200054", "GSM4200055", "GSM4200056", "GSM4200057", "GSM4200058", "GSM4200059", "GSM4200060", "GSM4200061", "GSM4200062", "GSM4200063", "GSM4200064", "GSM4200065", "GSM4200066", "GSM4200067", "GSM4200068", "GSM4200069", "GSM4200070", "GSM4200071", "GSM4200072", "GSM4200073", "GSM4200074", "GSM4200075", "GSM4200076", "GSM4200077", "GSM4200078", "GSM4200079", "GSM4200080", "GSM4200081", "GSM4200082", "GSM4200083", "GSM4200084", "GSM4200085", "GSM4200086", "GSM4200087", "GSM4200088", "GSM4200089", "GSM4200090", "GSM4200091", "GSM4200092", "GSM4200093", "GSM4200094"], "sample_count": 60, "group_sizes": null, "group_sizes_basis": null, "platform": "21103", "taxon": "Mus musculus", "title": "Longitudinal single-cell transcriptomics analysis of mouse lung upon bleomycin-induced injury", "resolution_checked_at": "2026-11-01T17:30:42Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE27957", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE27957", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM691362", "GSM691363", "GSM691364", "GSM691365", "GSM691366", "GSM691367", "GSM691368", "GSM691369", "GSM691370", "GSM691371", "GSM691372", "GSM691373", "GSM691374", "GSM691375", "GSM691376", "GSM691377", "GSM691378", "GSM691379", "GSM691380", "GSM691381", "GSM691382", "GSM691383", "GSM691384", "GSM691385", "GSM691386", "GSM691387", "GSM691388", "GSM691389", "GSM691390", "GSM691391", "GSM691392", "GSM691393", "GSM691394", "GSM691395", "GSM691396", "GSM691397", "GSM691398", "GSM691399", "GSM691400", "GSM691401", "GSM691402", "GSM691403", "GSM691404", "GSM691405", "GSM691406"], "sample_count": 45, "group_sizes": null, "group_sizes_basis": null, "platform": "5175", "taxon": "Homo sapiens", "title": "Peripheral Blood Mononuclear Cell Gene Expression Profiles May Predict Poor Outcome in Idiopathic Pulmonary Fibrosis [Affymetrix]", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE28042", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE28042", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM693750", "GSM693751", "GSM693752", "GSM693753", "GSM693754", "GSM693755", "GSM693756", "GSM693757", "GSM693758", "GSM693759", "GSM693760", "GSM693761", "GSM693762", "GSM693763", "GSM693764", "GSM693765", "GSM693766", "GSM693767", "GSM693768", "GSM693769", "GSM693770", "GSM693771", "GSM693772", "GSM693773", "GSM693774", "GSM693775", "GSM693776", "GSM693777", "GSM693778", "GSM693779", "GSM693780", "GSM693781", "GSM693782", "GSM693783", "GSM693784", "GSM693785", "GSM693786", "GSM693787", "GSM693788", "GSM693789", "GSM693790", "GSM693791", "GSM693792", "GSM693793", "GSM693794", "GSM693795", "GSM693796", "GSM693797", "GSM693798", "GSM693799", "GSM693800", "GSM693801", "GSM693802", "GSM693803", "GSM693804", "GSM693805", "GSM693806", "GSM693807", "GSM693808", "GSM693809", "GSM693810", "GSM693811", "GSM693812", "GSM693813", "GSM693814", "GSM693815", "GSM693816", "GSM693817", "GSM693818", "GSM693819", "GSM693820", "GSM693821", "GSM693822", "GSM693823", "GSM693824", "GSM698440", "GSM698441", "GSM698442", "GSM698443", "GSM698444", "GSM698445", "GSM698446", "GSM698447", "GSM698448", "GSM698449", "GSM698450", "GSM698451", "GSM698452", "GSM698453", "GSM698454", "GSM698455", "GSM698456", "GSM698457", "GSM698458"], "sample_count": 94, "group_sizes": null, "group_sizes_basis": null, "platform": "6480", "taxon": "Homo sapiens", "title": "Peripheral Blood Mononuclear Cell Gene Expression Profiles May Predict Poor Outcome in Idiopathic Pulmonary Fibrosis [Agilent]", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE32537", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE32537", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM806204", "GSM806205", "GSM806206", "GSM806207", "GSM806208", "GSM806209", "GSM806210", "GSM806211", "GSM806212", "GSM806213", "GSM806214", "GSM806215", "GSM806216", "GSM806217", "GSM806218", "GSM806219", "GSM806220", "GSM806221", "GSM806222", "GSM806223", "GSM806224", "GSM806225", "GSM806226", "GSM806227", "GSM806228", "GSM806229", "GSM806230", "GSM806231", "GSM806232", "GSM806233", "GSM806234", "GSM806235", "GSM806236", "GSM806237", "GSM806238", "GSM806239", "GSM806240", "GSM806241", "GSM806242", "GSM806243", "GSM806244", "GSM806245", "GSM806246", "GSM806247", "GSM806248", "GSM806249", "GSM806250", "GSM806251", "GSM806252", "GSM806253", "GSM806254", "GSM806255", "GSM806256", "GSM806257", "GSM806258", "GSM806259", "GSM806260", "GSM806261", "GSM806262", "GSM806263", "GSM806264", "GSM806265", "GSM806266", "GSM806267", "GSM806268", "GSM806269", "GSM806270", "GSM806271", "GSM806272", "GSM806273", "GSM806274", "GSM806275", "GSM806276", "GSM806277", "GSM806278", "GSM806279", "GSM806280", "GSM806281", "GSM806282", "GSM806283", "GSM806284", "GSM806285", "GSM806286", "GSM806287", "GSM806288", "GSM806289", "GSM806290", "GSM806291", "GSM806292", "GSM806293", "GSM806294", "GSM806295", "GSM806296", "GSM806297", "GSM806298", "GSM806299", "GSM806300", "GSM806301", "GSM806302", "GSM806303", "GSM806304", "GSM806305", "GSM806306", "GSM806307", "GSM806308", "GSM806309", "GSM806310", "GSM806311", "GSM806312", "GSM806313", "GSM806314", "GSM806315", "GSM806316", "GSM806317", "GSM806318", "GSM806319", "GSM806320", "GSM806321", "GSM806322", "GSM806323", "GSM806324", "GSM806325", "GSM806326", "GSM806327", "GSM806328", "GSM806329", "GSM806330", "GSM806331", "GSM806332", "GSM806333", "GSM806334", "GSM806335", "GSM806336", "GSM806337", "GSM806338", "GSM806339", "GSM806340", "GSM806341", "GSM806342", "GSM806343", "GSM806344", "GSM806345", "GSM806346", "GSM806347", "GSM806348", "GSM806349", "GSM806350", "GSM806351", "GSM806352", "GSM806353", "GSM806354", "GSM806355", "GSM806356", "GSM806357", "GSM806358", "GSM806359", "GSM806360", "GSM806361", "GSM806362", "GSM806363", "GSM806364", "GSM806365", "GSM806366", "GSM806367", "GSM806368", "GSM806369", "GSM806370", "GSM806371", "GSM806372", "GSM806373", "GSM806374", "GSM806375", "GSM806376", "GSM806377", "GSM806378", "GSM806379", "GSM806380", "GSM806381", "GSM806382", "GSM806383", "GSM806384", "GSM806385", "GSM806386", "GSM806387", "GSM806388", "GSM806389", "GSM806390", "GSM806391", "GSM806392", "GSM806393", "GSM806394", "GSM806395", "GSM806396", "GSM806397", "GSM806398", "GSM806399", "GSM806400", "GSM806401", "GSM806402", "GSM806403", "GSM806404", "GSM806405", "GSM806406", "GSM806407", "GSM806408", "GSM806409", "GSM806410", "GSM806411", "GSM806412", "GSM806413", "GSM806414", "GSM806415", "GSM806416", "GSM806417", "GSM806418", "GSM806419", "GSM806420"], "sample_count": 217, "group_sizes": null, "group_sizes_basis": null, "platform": "6244", "taxon": "Homo sapiens", "title": "Molecular phenotyping of the idiopathic interstitial pneumonias [mRNA]", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE33566", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE33566", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM829965", "GSM829966", "GSM829967", "GSM829968", "GSM829969", "GSM829970", "GSM829971", "GSM829972", "GSM829973", "GSM829974", "GSM829975", "GSM829976", "GSM829977", "GSM829978", "GSM829979", "GSM829980", "GSM829981", "GSM829982", "GSM829983", "GSM829984", "GSM829985", "GSM829986", "GSM829987", "GSM829988", "GSM829989", "GSM829990", "GSM829991", "GSM829992", "GSM829993", "GSM829994", "GSM829995", "GSM829996", "GSM829997", "GSM829998", "GSM829999", "GSM830000", "GSM830001", "GSM830002", "GSM830003", "GSM830004", "GSM830005", "GSM830006", "GSM830007", "GSM830008", "GSM830009", "GSM830010", "GSM830011", "GSM830012", "GSM830013", "GSM830014", "GSM830015", "GSM830016", "GSM830017", "GSM830018", "GSM830019", "GSM830020", "GSM830021", "GSM830022", "GSM830023", "GSM830024", "GSM830025", "GSM830026", "GSM830027", "GSM830028", "GSM830029", "GSM830030", "GSM830031", "GSM830032", "GSM830033", "GSM830034", "GSM830035", "GSM830036", "GSM830037", "GSM830038", "GSM830039", "GSM830040", "GSM830041", "GSM830042", "GSM830043", "GSM830044", "GSM830045", "GSM830046", "GSM830047", "GSM830048", "GSM830049", "GSM830050", "GSM830051", "GSM830052", "GSM830053", "GSM830054", "GSM830055", "GSM830056", "GSM830057", "GSM830058", "GSM830059", "GSM830060", "GSM830061", "GSM830062", "GSM830063", "GSM830064", "GSM830065", "GSM830066", "GSM830067", "GSM830068", "GSM830069", "GSM830070", "GSM830071", "GSM830072", "GSM830073", "GSM830074", "GSM830075", "GSM830076", "GSM830077", "GSM830078", "GSM830079", "GSM830080", "GSM830081", "GSM830082", "GSM830083", "GSM830084", "GSM830085", "GSM830086", "GSM830087"], "sample_count": 123, "group_sizes": null, "group_sizes_basis": null, "platform": "6480", "taxon": "Homo sapiens", "title": "The Peripheral Blood Transcriptome Predicts the Presence and Extent of Disease in Idiopathic Pulmonary Fibrosis", "resolution_checked_at": "2026-11-01T17:30:42Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE38958", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE38958", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM952756", "GSM952757", "GSM952758", "GSM952759", "GSM952760", "GSM952761", "GSM952762", "GSM952763", "GSM952764", "GSM952765", "GSM952766", "GSM952767", "GSM952768", "GSM952769", "GSM952770", "GSM952771", "GSM952772", "GSM952773", "GSM952774", "GSM952775", "GSM952776", "GSM952777", "GSM952778", "GSM952779", "GSM952780", "GSM952781", "GSM952782", "GSM952783", "GSM952784", "GSM952785", "GSM952786", "GSM952787", "GSM952788", "GSM952789", "GSM952790", "GSM952791", "GSM952792", "GSM952793", "GSM952794", "GSM952795", "GSM952796", "GSM952797", "GSM952798", "GSM952799", "GSM952800", "GSM952801", "GSM952802", "GSM952803", "GSM952804", "GSM952805", "GSM952806", "GSM952807", "GSM952808", "GSM952809", "GSM952810", "GSM952811", "GSM952812", "GSM952813", "GSM952814", "GSM952815", "GSM952816", "GSM952817", "GSM952818", "GSM952819", "GSM952820", "GSM952821", "GSM952822", "GSM952823", "GSM952824", "GSM952825", "GSM952826", "GSM952827", "GSM952828", "GSM952829", "GSM952830", "GSM952831", "GSM952832", "GSM952833", "GSM952834", "GSM952835", "GSM952836", "GSM952837", "GSM952838", "GSM952839", "GSM952840", "GSM952841", "GSM952842", "GSM952843", "GSM952844", "GSM952845", "GSM952846", "GSM952847", "GSM952848", "GSM952849", "GSM952850", "GSM952851", "GSM952852", "GSM952853", "GSM952854", "GSM952855", "GSM952856", "GSM952857", "GSM952858", "GSM952859", "GSM952860", "GSM952861", "GSM952862", "GSM952863", "GSM952864", "GSM952865", "GSM952866", "GSM952867", "GSM952868", "GSM952869", "GSM952870"], "sample_count": 115, "group_sizes": null, "group_sizes_basis": null, "platform": "5175", "taxon": "Homo sapiens", "title": "Profiling of Gene Expression in Idiopathic Pulmonary Fibrosis", "resolution_checked_at": "2026-11-01T17:30:42Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE47460", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE47460", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM1149948", "GSM1149949", "GSM1149950", "GSM1149951", "GSM1149952", "GSM1149953", "GSM1149954", "GSM1149955", "GSM1149956", "GSM1149957", "GSM1149958", "GSM1149959", "GSM1149960", "GSM1149961", "GSM1149962", "GSM1149963", "GSM1149964", "GSM1149965", "GSM1149966", "GSM1149967", "GSM1149968", "GSM1149969", "GSM1149970", "GSM1149971", "GSM1149972", "GSM1149973", "GSM1149974", "GSM1149975", "GSM1149976", "GSM1149977", "GSM1149978", "GSM1149979", "GSM1149980", "GSM1149981", "GSM1149982", "GSM1149983", "GSM1149984", "GSM1149985", "GSM1149986", "GSM1149987", "GSM1149988", "GSM1149989", "GSM1149990", "GSM1149991", "GSM1149992", "GSM1149993", "GSM1149994", "GSM1149995", "GSM1149996", "GSM1149997", "GSM1149998", "GSM1149999", "GSM1150000", "GSM1150001", "GSM1150002", "GSM1150003", "GSM1150004", "GSM1150005", "GSM1150006", "GSM1150007", "GSM1150008", "GSM1150009", "GSM1150010", "GSM1150011", "GSM1150012", "GSM1150013", "GSM1150014", "GSM1150015", "GSM1150016", "GSM1150017", "GSM1150018", "GSM1150019", "GSM1150020", "GSM1150021", "GSM1150022", "GSM1150023", "GSM1150024", "GSM1150025", "GSM1150026", "GSM1150027", "GSM1150028", "GSM1150029", "GSM1150030", "GSM1150031", "GSM1150032", "GSM1150033", "GSM1150034", "GSM1150035", "GSM1150036", "GSM1150037", "GSM1150038", "GSM1150039", "GSM1150040", "GSM1150041", "GSM1150042", "GSM1150043", "GSM1150044", "GSM1150045", "GSM1150046", "GSM1150047", "GSM1150048", "GSM1150049", "GSM1150050", "GSM1150051", "GSM1150052", "GSM1150053", "GSM1150054", "GSM1150055", "GSM1150056", "GSM1150057", "GSM1150058", "GSM1150059", "GSM1150060", "GSM1150061", "GSM1150062", "GSM1150063", "GSM1150064", "GSM1150065", "GSM1150066", "GSM1150067", "GSM1150068", "GSM1150069", "GSM1150070", "GSM1150071", "GSM1150072", "GSM1150073", "GSM1150074", "GSM1150075", "GSM1150076", "GSM1150077", "GSM1150078", "GSM1150079", "GSM1150080", "GSM1150081", "GSM1150082", "GSM1150083", "GSM1150084", "GSM1150085", "GSM1150086", "GSM1150087", "GSM1150088", "GSM1150089", "GSM1150090", "GSM1150091", "GSM1150092", "GSM1150093", "GSM1150094", "GSM1150095", "GSM1150096", "GSM1150097", "GSM1150098", "GSM1150099", "GSM1150100", "GSM1150101", "GSM1150102", "GSM1150103", "GSM1150104", "GSM1150105", "GSM1150106", "GSM1150107", "GSM1150108", "GSM1150109", "GSM1150110", "GSM1150111", "GSM1150112", "GSM1150113", "GSM1150114", "GSM1150115", "GSM1150116", "GSM1150117", "GSM1150118", "GSM1150119", "GSM1150120", "GSM1150121", "GSM1150122", "GSM1150123", "GSM1150124", "GSM1150125", "GSM1150126", "GSM1150127", "GSM1150128", "GSM1150129", "GSM1150130", "GSM1150131", "GSM1150132", "GSM1150133", "GSM1150134", "GSM1150135", "GSM1150136", "GSM1150137", "GSM1150138", "GSM1150139", "GSM1150140", "GSM1150141", "GSM1150142", "GSM1150143", "GSM1150144", "GSM1150145", "GSM1150146", "GSM1150147", "GSM1150148", "GSM1150149", "GSM1150150", "GSM1150151", "GSM1150152", "GSM1150153", "GSM1150154", "GSM1150155", "GSM1150156", "GSM1150157", "GSM1150158", "GSM1150159", "GSM1150160", "GSM1150161", "GSM1150162", "GSM1150163", "GSM1150164", "GSM1150165", "GSM1150166", "GSM1150167", "GSM1150168", "GSM1150169", "GSM1150170", "GSM1150171", "GSM1150172", "GSM1150173", "GSM1150174", "GSM1150175", "GSM1150176", "GSM1150177", "GSM1150178", "GSM1150179", "GSM1150180", "GSM1150181", "GSM1150182", "GSM1150183", "GSM1150184", "GSM1150185", "GSM1150186", "GSM1150187", "GSM1150188", "GSM1150189", "GSM1150190", "GSM1150191", "GSM1150192", "GSM1150193", "GSM1150194", "GSM1150195", "GSM1150196", "GSM1150197", "GSM1150198", "GSM1150199", "GSM1150200", "GSM1150201", "GSM1150202", "GSM1150203", "GSM1150204", "GSM1150205", "GSM1150206", "GSM1150207", "GSM1150208", "GSM1150209", "GSM1150210", "GSM1150211", "GSM1150212", "GSM1150213", "GSM1150214", "GSM1150215", "GSM1150216", "GSM1150217", "GSM1150218", "GSM1150219", "GSM1150220", "GSM1150221", "GSM1150222", "GSM1150223", "GSM1150224", "GSM1150225", "GSM1150226", "GSM1150227", "GSM1150228", "GSM1150229", "GSM1150230", "GSM1150231", "GSM1150232", "GSM1150233", "GSM1150234", "GSM1150235", "GSM1150236", "GSM1150237", "GSM1150238", "GSM1150239", "GSM1150240", "GSM1150241", "GSM1150242", "GSM1150243", "GSM1150244", "GSM1150245", "GSM1150246", "GSM1150247", "GSM1150248", "GSM1150249", "GSM1150250", "GSM1150251", "GSM1150252", "GSM1150253", "GSM1150254", "GSM1150255", "GSM1150256", "GSM1150257", "GSM1150258", "GSM1150259", "GSM1150260", "GSM1150261", "GSM1150262", "GSM1150263", "GSM1150264", "GSM1150265", "GSM1150266", "GSM1150267", "GSM1150268", "GSM1150269", "GSM1150270", "GSM1150271", "GSM1150272", "GSM1150273", "GSM1150274", "GSM1150275", "GSM1150276", "GSM1150277", "GSM1150278", "GSM1150279", "GSM1150280", "GSM1150281", "GSM1150282", "GSM1150283", "GSM1150284", "GSM1150285", "GSM1150286", "GSM1150287", "GSM1150288", "GSM1150289", "GSM1150290", "GSM1150291", "GSM1150292", "GSM1150293", "GSM1150294", "GSM1150295", "GSM1150296", "GSM1150297", "GSM1150298", "GSM1150299", "GSM1150300", "GSM1150301", "GSM1150302", "GSM1150303", "GSM1150304", "GSM1150305", "GSM1150306", "GSM1150307", "GSM1150308", "GSM1150309", "GSM1150310", "GSM1150311", "GSM1150312", "GSM1150313", "GSM1150314", "GSM1150315", "GSM1150316", "GSM1150317", "GSM1150318", "GSM1150319", "GSM1150321", "GSM1150331", "GSM1150332", "GSM1150334", "GSM1150336", "GSM1150338", "GSM1150339", "GSM1150341", "GSM1150343", "GSM1150344", "GSM1150346", "GSM1150347", "GSM1150349", "GSM1150351", "GSM1150352", "GSM1150353", "GSM1150354", "GSM1150355", "GSM1150356", "GSM1150357", "GSM1150358", "GSM1150359", "GSM1150360", "GSM1150361", "GSM1150362", "GSM1150363", "GSM1150364", "GSM1150365", "GSM1150366", "GSM1150367", "GSM1150368", "GSM1150369", "GSM1150370", "GSM1150371", "GSM1150372", "GSM1150373", "GSM1150374", "GSM1150375", "GSM1150376", "GSM1150377", "GSM1150378", "GSM1150379", "GSM1150380", "GSM1150381", "GSM1150382", "GSM1150383", "GSM1150384", "GSM1150385", "GSM1150386", "GSM1150387", "GSM1150388", "GSM1150389", "GSM1150390", "GSM1150391", "GSM1150392", "GSM1150393", "GSM1150394", "GSM1150395", "GSM1150396", "GSM1150397", "GSM1150398", "GSM1150399", "GSM1150400", "GSM1150401", "GSM1150402", "GSM1150403", "GSM1150404", "GSM1150405", "GSM1150406", "GSM1150407", "GSM1150408", "GSM1150409", "GSM1150410", "GSM1150411", "GSM1150412", "GSM1150413", "GSM1150414", "GSM1150415", "GSM1150416", "GSM1150417", "GSM1150418", "GSM1150419", "GSM1150420", "GSM1150421", "GSM1150422", "GSM1150423", "GSM1150424", "GSM1150425", "GSM1150426", "GSM1150427", "GSM1150428", "GSM1150429", "GSM1150430", "GSM1150431", "GSM1150432", "GSM1150433", "GSM1150434", "GSM1150435", "GSM1150436", "GSM1150437", "GSM1150438", "GSM1150439", "GSM1150440", "GSM1150441", "GSM1150442", "GSM1150443", "GSM1150444", "GSM1150445", "GSM1150446", "GSM1150447", "GSM1150448", "GSM1150449", "GSM1150450", "GSM1150451", "GSM1150452", "GSM1150453", "GSM1150454", "GSM1150455", "GSM1150456", "GSM1150457", "GSM1150458", "GSM1150459", "GSM1150460", "GSM1150461", "GSM1150462", "GSM1150463", "GSM1150464", "GSM1150465", "GSM1150466", "GSM1150467", "GSM1150468", "GSM1150469", "GSM1150470", "GSM1150471", "GSM1150472", "GSM1150473", "GSM1150474", "GSM1150475", "GSM1150476", "GSM1150477", "GSM1150478", "GSM1150479", "GSM1150480", "GSM1150481", "GSM1150482", "GSM1150483", "GSM1150484", "GSM1150485", "GSM1150486", "GSM1150487", "GSM1150488", "GSM1150489", "GSM1150490", "GSM1150491", "GSM1150492", "GSM1150493", "GSM1150494", "GSM1150495", "GSM1150496", "GSM1150497", "GSM1150498", "GSM1150499", "GSM1150500", "GSM1150501", "GSM1150502", "GSM1150503", "GSM1150504", "GSM1150505", "GSM1150506", "GSM1150507", "GSM1150508", "GSM1150509", "GSM1150510", "GSM1150511", "GSM1150512", "GSM1150513", "GSM1150514", "GSM1150515", "GSM1150516", "GSM1150517", "GSM1150518", "GSM1150519", "GSM1150520", "GSM1150521", "GSM1150522", "GSM1150523", "GSM1150524", "GSM1150525", "GSM1150526", "GSM1150527", "GSM1150528", "GSM1150529", "GSM1150530", "GSM1150531", "GSM1150532", "GSM1150533", "GSM1150534", "GSM1150535", "GSM1150536", "GSM1150537", "GSM1150538", "GSM1150539", "GSM1150540", "GSM1150541", "GSM1150542", "GSM1150543", "GSM1150544", "GSM1150545", "GSM1150546", "GSM1150547"], "sample_count": 582, "group_sizes": null, "group_sizes_basis": null, "platform": "6480;14550", "taxon": "Homo sapiens", "title": "Gene expression profiling of chronic lung disease for the Lung Genomics Research Consortium", "resolution_checked_at": "2026-11-01T17:30:42Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE70866", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE70866", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM1820719", "GSM1820720", "GSM1820721", "GSM1820722", "GSM1820723", "GSM1820724", "GSM1820725", "GSM1820726", "GSM1820727", "GSM1820728", "GSM1820729", "GSM1820730", "GSM1820731", "GSM1820732", "GSM1820733", "GSM1820734", "GSM1820735", "GSM1820736", "GSM1820737", "GSM1820738", "GSM1820739", "GSM1820740", "GSM1820741", "GSM1820742", "GSM1820743", "GSM1820744", "GSM1820745", "GSM1820746", "GSM1820747", "GSM1820748", "GSM1820749", "GSM1820750", "GSM1820751", "GSM1820752", "GSM1820753", "GSM1820754", "GSM1820755", "GSM1820756", "GSM1820757", "GSM1820758", "GSM1820759", "GSM1820760", "GSM1820761", "GSM1820762", "GSM1820763", "GSM1820764", "GSM1820765", "GSM1820766", "GSM1820767", "GSM1820768", "GSM1820769", "GSM1820770", "GSM1820771", "GSM1820772", "GSM1820773", "GSM1820774", "GSM1820775", "GSM1820776", "GSM1820777", "GSM1820778", "GSM1820779", "GSM1820780", "GSM1820781", "GSM1820782", "GSM1820783", "GSM1820784", "GSM1820785", "GSM1820786", "GSM1820787", "GSM1820788", "GSM1820789", "GSM1820790", "GSM1820791", "GSM1820792", "GSM1820793", "GSM1820794", "GSM1820795", "GSM1820796", "GSM1820797", "GSM1820798", "GSM1820799", "GSM1820800", "GSM1820801", "GSM1820802", "GSM1820803", "GSM1820804", "GSM1820805", "GSM1820806", "GSM1820807", "GSM1820808", "GSM1820809", "GSM1820810", "GSM1820811", "GSM1820812", "GSM1820813", "GSM1820814", "GSM1820815", "GSM1820816", "GSM1820817", "GSM1820818", "GSM1820819", "GSM1820820", "GSM1820821", "GSM1820822", "GSM1820823", "GSM1820824", "GSM1820825", "GSM1820826", "GSM1820827", "GSM1820828", "GSM1820829", "GSM1820830", "GSM1820831", "GSM1820832", "GSM1820833", "GSM1820834", "GSM1820835", "GSM1820836", "GSM1820837", "GSM1820838", "GSM1820839", "GSM1820840", "GSM1820841", "GSM1820842", "GSM1820843", "GSM1820844", "GSM1820845", "GSM1820846", "GSM1820847", "GSM1820848", "GSM1820849", "GSM1820850", "GSM1820851", "GSM1820852", "GSM1820853", "GSM1820854", "GSM1820855", "GSM1820856", "GSM1820857", "GSM1820858", "GSM1820859", "GSM1820860", "GSM1820861", "GSM1820862", "GSM1820863", "GSM1820864", "GSM1820865", "GSM1820866", "GSM1820867", "GSM1820868", "GSM1820869", "GSM1820870", "GSM1820871", "GSM1820872", "GSM1820873", "GSM1820874", "GSM1820875", "GSM1820876", "GSM1820877", "GSM1820878", "GSM1820879", "GSM1820880", "GSM1820881", "GSM1820882", "GSM1820883", "GSM1820884", "GSM1820885", "GSM1820886", "GSM1820887", "GSM1820888", "GSM1820889", "GSM1820890", "GSM1820891", "GSM1820892", "GSM1820893", "GSM1820894", "GSM1820895", "GSM1820896", "GSM1820897", "GSM1820898", "GSM1820899", "GSM1820900", "GSM1820901", "GSM1820902", "GSM1820903", "GSM1820904", "GSM1820905", "GSM1820906", "GSM1820907", "GSM1820908", "GSM1820909", "GSM1820910", "GSM1820911", "GSM1820912", "GSM1820913", "GSM1820914"], "sample_count": 196, "group_sizes": null, "group_sizes_basis": null, "platform": "17077;14550", "taxon": "Homo sapiens", "title": "BAL cell gene expression is predictive of Mortality in Idiopathic Pulmonary Fibrosis and enriched for Genes of Airway Basal Cells (II)", "resolution_checked_at": "2026-11-01T17:30:42Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE93606", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE93606", "version": null, "note": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 .", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM2458563", "GSM2458564", "GSM2458565", "GSM2458566", "GSM2458567", "GSM2458568", "GSM2458569", "GSM2458570", "GSM2458571", "GSM2458572", "GSM2458573", "GSM2458574", "GSM2458575", "GSM2458576", "GSM2458577", "GSM2458578", "GSM2458579", "GSM2458580", "GSM2458581", "GSM2458582", "GSM2458583", "GSM2458584", "GSM2458585", "GSM2458586", "GSM2458587", "GSM2458588", "GSM2458589", "GSM2458590", "GSM2458591", "GSM2458592", "GSM2458593", "GSM2458594", "GSM2458595", "GSM2458596", "GSM2458597", "GSM2458598", "GSM2458599", "GSM2458600", "GSM2458601", "GSM2458602", "GSM2458603", "GSM2458604", "GSM2458605", "GSM2458606", "GSM2458607", "GSM2458608", "GSM2458609", "GSM2458610", "GSM2458611", "GSM2458612", "GSM2458613", "GSM2458614", "GSM2458615", "GSM2458616", "GSM2458617", "GSM2458618", "GSM2458619", "GSM2458620", "GSM2458621", "GSM2458622", "GSM2458623", "GSM2458624", "GSM2458625", "GSM2458626", "GSM2458627", "GSM2458628", "GSM2458629", "GSM2458630", "GSM2458631", "GSM2458632", "GSM2458633", "GSM2458634", "GSM2458635", "GSM2458636", "GSM2458637", "GSM2458638", "GSM2458639", "GSM2458640", "GSM2458641", "GSM2458642", "GSM2458643", "GSM2458644", "GSM2458645", "GSM2458646", "GSM2458647", "GSM2458648", "GSM2458649", "GSM2458650", "GSM2458651", "GSM2458652", "GSM2458653", "GSM2458654", "GSM2458655", "GSM2458656", "GSM2458657", "GSM2458658", "GSM2458659", "GSM2458660", "GSM2458661", "GSM2458662", "GSM2458663", "GSM2458664", "GSM2458665", "GSM2458666", "GSM2458667", "GSM2458668", "GSM2458669", "GSM2458670", "GSM2458671", "GSM2458672", "GSM2458673", "GSM2458674", "GSM2458675", "GSM2458676", "GSM2458677", "GSM2458678", "GSM2458679", "GSM2458680", "GSM2458681", "GSM2458682", "GSM2458683", "GSM2458684", "GSM2458685", "GSM2458686", "GSM2458687", "GSM2458688", "GSM2458689", "GSM2458690", "GSM2458691", "GSM2458692", "GSM2458693", "GSM2458694", "GSM2458695", "GSM2458696", "GSM2458697", "GSM2458698", "GSM2458699", "GSM2458700", "GSM2458701", "GSM2458702", "GSM2458703", "GSM2458704", "GSM2458705", "GSM2458706", "GSM2458707", "GSM2458708", "GSM2458709", "GSM2458710", "GSM2458711", "GSM2458712", "GSM2458713", "GSM2458714", "GSM2458715", "GSM2458716", "GSM2458717", "GSM2458718", "GSM2458719", "GSM2458720", "GSM2458721", "GSM2458722", "GSM2458723", "GSM2458724", "GSM2458725", "GSM2458726", "GSM2458727", "GSM2458728", "GSM2458729", "GSM2458730", "GSM2458731", "GSM2458732", "GSM2458733", "GSM2458734", "GSM2458735", "GSM2458736"], "sample_count": 174, "group_sizes": null, "group_sizes_basis": null, "platform": "11532", "taxon": "Homo sapiens", "title": "Host-Microbial interactions in Idiopathic Pulmonary Fibrosis", "resolution_checked_at": "2026-11-01T17:30:42Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}], "gaps": ["asset:data:geo:GSE110147 not downloaded", "asset:data:geo:GSE110147 licence not read", "asset:data:geo:GSE132607 not downloaded", "asset:data:geo:GSE132607 licence not read", "asset:data:geo:GSE141259 not downloaded", "asset:data:geo:GSE141259 licence not read", "asset:data:geo:GSE27957 not downloaded", "asset:data:geo:GSE27957 licence not read", "asset:data:geo:GSE28042 not downloaded", "asset:data:geo:GSE28042 licence not read", "asset:data:geo:GSE32537 not downloaded", "asset:data:geo:GSE32537 licence not read", "asset:data:geo:GSE33566 not downloaded", "asset:data:geo:GSE33566 licence not read", "asset:data:geo:GSE38958 not downloaded", "asset:data:geo:GSE38958 licence not read", "asset:data:geo:GSE47460 not downloaded", "asset:data:geo:GSE47460 licence not read", "asset:data:geo:GSE70866 not downloaded", "asset:data:geo:GSE70866 licence not read", "asset:data:geo:GSE93606 not downloaded", "asset:data:geo:GSE93606 licence not read"]}, "analysis": {"state": "partial", "methods": [{"id": "method-1", "family": "regression_modelling", "specific": "logistic", "label": "Regression modelling", "dsl_operations": ["glm_logit_fit"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["predictors_and_outcome"], "evidence": {"score": 1.0, "band": "verbatim", "quote": "CD247 was identified as the hub gene associated with percent predicted diffusion capacity of the lung for carbon monoxide (Dlco% predicted) and prognosis according to Pearson correlation, logistic regression, and survival analysis."}}, {"id": "method-2", "family": "survival_analysis", "specific": "cox_proportional_hazards", "label": "Survival analysis", "dsl_operations": ["cox_ph"], "missing_operations": [], "expressible": true, "parameters": {"hazard_ratio": "The hazard ratio (HR) for the statistica"}, "data_shapes": ["time_to_event_with_censoring"], "evidence": {"score": 0.8, "band": "high", "quote": "Cox regression"}}, {"id": "method-3", "family": "principal_component_analysis", "specific": "pca", "label": "Principal component analysis", "dsl_operations": ["pca_fit"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["wide_numeric_matrix"], "evidence": {"score": 0.8, "band": "high", "quote": "Principal component analysis"}}, {"id": "method-4", "family": "correlation_analysis", "specific": "pearson", "label": "Correlation analysis", "dsl_operations": ["pearson_r"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["paired_numeric_columns"], "evidence": {"score": 0.7, "band": "medium", "quote": "Pearson correlation"}}, {"id": "method-5", "family": "network_analysis", "specific": "ppi_network", "label": "Network / pathway analysis", "dsl_operations": ["build_graph", "centrality_scores", "pathway_enrich"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["edge_list"], "evidence": {"score": 0.7, "band": "medium", "quote": "protein-protein interaction"}}, {"id": "method-6", "family": "diagnostic_evaluation", "specific": "roc", "label": "Diagnostic test evaluation", "dsl_operations": ["confusion_counts", "roc_curve", "sensitivity_specificity", "solve_confusion_matrix", "classification_metrics", "published_precision_envelope"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["reference_standard_and_test"], "evidence": {"score": 0.8, "band": "high", "quote": "ROC curve"}}, {"id": "method-7", "family": "contingency_analysis", "specific": "chi_square", "label": "Categorical (contingency table) analysis", "dsl_operations": ["chi_square_test"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["categorical_cross_tabulation"], "evidence": {"score": 0.8, "band": "high", "quote": "chi-square"}}], "targets": [], "gaps": ["method.reader_differs_from_extractor"]}, "capability": {"state": "complete", "requirements": [{"capability_id": "capability:computational_analysis", "label": "Computational analysis platform", "assay_families": ["meta_analysis", "machine_learning", "survival_analysis", "statistical_regression", "pca", "molecular_docking", "network_analysis", "differential_expression", "gwas"], "availability_state": "owned", "tier_unlocked": "R1", "candidate": "Automated Assays Laravel application and simulated adapters"}], "gaps": []}, "readiness": {"state": "complete", "tier": "R1", "blocking_axis": "none", "blocked_on": "nothing:replicable_now", "axes": {"method": {"tier": "R1", "expressible": true, "required_operations": ["glm_logit_fit"], "missing_operations": [], "basis": "The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: logistic."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R1", "reachable": true, "accessions": ["GSE32537", "GSE47460", "GSE110147", "GSE141259", "GSE93606", "GSE27957", "GSE28042", "GSE38958", "GSE132607", "GSE33566", "GSE70866"], "resolved_accessions": ["GSE32537", "GSE47460", "GSE110147", "GSE141259", "GSE93606", "GSE27957", "GSE28042", "GSE38958", "GSE132607", "GSE33566", "GSE70866"], "statements": ["Publicly available datasets were analyzed in this study. This data can be found here: GSE32537 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32537), GSE47460 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE47460), GSE110147 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110147), GSE141259 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141259), GSE93606 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE93606, GSE27957 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27957), GSE28042 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE28042), GSE38958 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE38958), GSE132607 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE132607), GSE33566 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33566), GSE70866 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70866). The annotated gene set file used in ssGSEA were available in Supplementary Material 2 ."], "basis": "The paper names GSE32537, GSE47460, GSE110147, GSE141259, GSE93606, GSE27957, GSE28042, GSE38958, GSE132607, GSE33566, GSE70866 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": ["glm_logit_fit"], "assets": ["source:pmid:34880861", "data:geo:GSE110147"], "steps": ["run_analysis"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:GSE110147"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-11-01T17:10:40Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": "verbatim"}, "calls": 5, "usage": {"prompt_tokens": 15620, "completion_tokens": 3968, "cached_tokens": 128}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:34880861", "type": "paper", "label": "pmid:34880861"}, {"id": "source:pmid:34880861", "type": "manuscript", "label": "PMID 34880861 full text"}, {"id": "data:geo:GSE110147", "type": "dataset", "label": "GEO GSE110147"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:34880861", "type": "paper", "label": "pmid:34880861"}, {"id": "source:pmid:34880861", "type": "manuscript", "label": "PMID 34880861 full text"}, {"id": "data:geo:GSE110147", "type": "dataset", "label": "GEO GSE110147"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-34880861", "type": "extraction", "used": ["source:pmid:34880861"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-GSE110147", "type": "accession_resolution", "used": ["data:geo:GSE110147"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:34880861", "parent_hash": "sha256:3dbfd914fddd05a7943a8f2cf5912498bb2aa43d174eecce3b7379703daf246b", "fork_of": null, "generation": 4}, "gaps": ["asset:data:geo:GSE110147 licence not read", "asset:data:geo:GSE110147 not downloaded", "asset:data:geo:GSE132607 licence not read", "asset:data:geo:GSE132607 not downloaded", "asset:data:geo:GSE141259 licence not read", "asset:data:geo:GSE141259 not downloaded", "asset:data:geo:GSE27957 licence not read", "asset:data:geo:GSE27957 not downloaded", "asset:data:geo:GSE28042 licence not read", "asset:data:geo:GSE28042 not downloaded", "asset:data:geo:GSE32537 licence not read", "asset:data:geo:GSE32537 not downloaded", "asset:data:geo:GSE33566 licence not read", "asset:data:geo:GSE33566 not downloaded", "asset:data:geo:GSE38958 licence not read", "asset:data:geo:GSE38958 not downloaded", "asset:data:geo:GSE47460 licence not read", "asset:data:geo:GSE47460 not downloaded", "asset:data:geo:GSE70866 licence not read", "asset:data:geo:GSE70866 not downloaded", "asset:data:geo:GSE93606 licence not read", "asset:data:geo:GSE93606 not downloaded", "execution.not_run", "method.reader_differs_from_extractor", "review.human_critique", "review.independent_reader", "review.machine_critique"], "assays": [{"role": "data_generation", "definition_id": "scrna_seq", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "unsupported", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["Materials and Methods Analysis of scRNA-seq Data The computational analysis of the GSE14", "nsform () function was used to normalize the scRNA-seq data. Principal component analysis (PCA) was", "ine in FVC >10% over six months period). The scRNA-seq Data Analysis of CD247 According to the Lung", "ells and NK cells in the human lung based on scRNA-seq data (37) ( Supplementary Figure 5A ). In th"], "order_basis": "paper_text_order:1995", "id": "assay:1"}, {"role": "data_generation", "definition_id": "animal_model", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["A-seq data (37) ( Supplementary Figure 5A ). In the mouse lung, Cd247 is also mainly expressed by the", "ata (37) ( Supplementary Figure 5A ). In the mouse lung, Cd247 is also mainly expressed by the", "tabase (https://www.lungmap.net/), (B–D) the mouse lung (GSE141259 dataset).Click here for addi"], "order_basis": "paper_text_order:6417", "id": "assay:2"}, {"role": "analysis", "definition_id": "regression_modelling", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["glm_logit_fit"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["CD247 was identified as the hub gene associated with percent predicted diffusion capacity of the lung for carbon monoxide (Dlco% predicted) and prognosis according to Pearson correlation, logistic regression, and survival analysis."], "order_basis": "consumes_earlier_output", "id": "assay:3"}]}