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pmid:34992419
CTLA4-Mediated Immunosuppression in Glioblastoma is Associated with the Infiltration of Macrophages in the Tumor Microenvironment.
Xiudong Guan · Yangyang Wang · Yueqian Sun · Chuanbao Zhang · Shunchang Ma · Dainan Zhang · Deling Li · Wang Jia
Journal of inflammation research · 2021 doi:10.2147/JIR.S341981
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Experiment
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Data
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Analysis
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Execution
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Complete file
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The inhibitors of CTLA4 provide a novel strategy to improve the outcome of peripheral cancer, but their clinical effects are limited in glioblastoma (GBM), thus the comprehensive role of CTLA4 needs to be addressed.\nPATIENTS AND METHODS: A total of 471 GBM cases were enrolled in this study from 5 cohorts. In our works, the Cancer Genome Atlas (TCGA) cohort was divided into the training set, and the Chinese Glioma Genome Atlas (CGGA), REMBRANDT, and GSE84465 cohorts were divided into validation sets. Tissues from our cohort were collected for histopathologic validation. Then, the role of CTLA4 in the TME of GBM was comprehensively investigated.\nRESULTS: Significant differences exist in immunological characteristics between the low and high CTLA4 expression groups. Mutation analysis found different genomic patterns associated with CTLA4 expression. Next, network analysis found the module named c1-1562 including CTLA4 correlated with over survival (OS) in GBM. We also developed a predictive model to calculate the risk score for every GBM case and the risk score was independently related to OS. Furthermore, the expression of CTLA4 was positively related to the infiltration level and function of macrophage in GBM TME based on seven independent algorithms, single-cell RNA-seq data and immunohistochemistry.\nCONCLUSION: These findings implicate that CTLA4 could serve as a novel target for prognosis and therapy in GBM patients. CTLA4-mediated immune suppression may be attributed to the infiltration of macrophages in the tumor microenvironment.", "claims": [{"id": "claim-method", "statement": "The Pearsons’ correlation coefficient between the H-score of CD68 and the number of CTLA4 expression cells was then computed in IHC analysis.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:34992419", "locator": "sections[9] \"Statistical Analysis\" paragraph 2", "quote": "The Pearsons’ correlation coefficient between the H-score of CD68 and the number of CTLA4 expression cells was then computed in IHC analysis."}], "state": "complete"}, {"id": "claim-data-access", "statement": "Sequencing data and corresponding clinical information on patients diagnosed with GBM were obtained from TCGA, CGGA19 and REMBRANDT. 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In this study, 463 GBM cases were collected from three databases, including 168 cases from TCGA database, 85 cases from CGGA database, and 210 cases from REMBRANDT database."}], "state": "complete"}, {"id": "claim-target-result", "statement": "Furthermore, the expression of CTLA4 was positively related to the infiltration level and function of macrophage in GBM TME based on seven independent algorithms, single-cell RNA-seq data and immunohistochemistry.", "kind": "qualitative", "target": null, "evidence": [{"asset": "source:pmid:34992419", "locator": "sections[0] \"Abstract\" paragraph 3", "quote": "Furthermore, the expression of CTLA4 was positively related to the infiltration level and function of macrophage in GBM TME based on seven independent algorithms, single-cell RNA-seq data and immunohistochemistry."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": "Furthermore, the expression of CTLA4 was positively related to the infiltration level and function of macrophage in GBM TME based on seven independent algorithms, single-cell RNA-seq data and immunohistochemistry.", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:34992419"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. 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"GSM2244350", "GSM2244351", "GSM2244352", "GSM2244353", "GSM2244354", "GSM2244355", "GSM2244356", "GSM2244357", "GSM2244358", "GSM2244359", "GSM2244360", "GSM2244361", "GSM2244362", "GSM2244363", "GSM2244364", "GSM2244365", "GSM2244366", "GSM2244367", "GSM2244368", "GSM2244369", "GSM2244370", "GSM2244371", "GSM2244372", "GSM2244373", "GSM2244374", "GSM2244375", "GSM2244376", "GSM2244377", "GSM2244378", "GSM2244379", "GSM2244380", "GSM2244381", "GSM2244382", "GSM2244383", "GSM2244384", "GSM2244385", "GSM2244386", "GSM2244387", "GSM2244388", "GSM2244389", "GSM2244390", "GSM2244391", "GSM2244392", "GSM2244393", "GSM2244394", "GSM2244395", "GSM2244396", "GSM2244397", "GSM2244398", "GSM2244399", "GSM2244400", "GSM2244401", "GSM2244402", "GSM2244403", "GSM2244404", "GSM2244405", "GSM2244406", "GSM2244407", "GSM2244408", "GSM2244409", "GSM2244410", "GSM2244411", "GSM2244412", "GSM2244413", "GSM2244414", "GSM2244415", "GSM2244416", "GSM2244417", "GSM2244418", "GSM2244419", "GSM2244420", 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"GSM2244563", "GSM2244564", "GSM2244565", "GSM2244566", "GSM2244567", "GSM2244568", "GSM2244569", "GSM2244570", "GSM2244571", "GSM2244572", "GSM2244573", "GSM2244574", "GSM2244575", "GSM2244576", "GSM2244577", "GSM2244578", "GSM2244579", "GSM2244580", "GSM2244581", "GSM2244582", "GSM2244583", "GSM2244584", "GSM2244585", "GSM2244586", "GSM2244587", "GSM2244588", "GSM2244589", "GSM2244590", "GSM2244591", "GSM2244592", "GSM2244593", "GSM2244594", "GSM2244595", "GSM2244596", "GSM2244597", "GSM2244598", "GSM2244599", "GSM2244600", "GSM2244601", "GSM2244602", "GSM2244603", "GSM2244604", "GSM2244605", "GSM2244606", "GSM2244607", "GSM2244608", "GSM2244609", "GSM2244610", "GSM2244611", "GSM2244612", "GSM2244613", "GSM2244614", "GSM2244615", "GSM2244616", "GSM2244617", "GSM2244618", "GSM2244619", "GSM2244620", "GSM2244621", "GSM2244622", "GSM2244623", "GSM2244624", "GSM2244625", "GSM2244626", "GSM2244627", "GSM2244628", "GSM2244629", "GSM2244630", "GSM2244631", "GSM2244632", "GSM2244633", "GSM2244634", "GSM2244635", "GSM2244636", "GSM2244637", "GSM2244638", "GSM2244639", "GSM2244640", "GSM2244641", "GSM2244642", "GSM2244643", "GSM2244644", "GSM2244645", "GSM2244646", "GSM2244647", "GSM2244648", "GSM2244649", "GSM2244650", "GSM2244651", "GSM2244652", "GSM2244653", "GSM2244654", "GSM2244655", "GSM2244656", "GSM2244657", "GSM2244658", "GSM2244659", "GSM2244660", "GSM2244661", "GSM2244662", "GSM2244663", "GSM2244664", "GSM2244665", "GSM2244666", "GSM2244667", "GSM2244668", "GSM2244669", "GSM2244670", "GSM2244671", "GSM2244672", "GSM2244673", "GSM2244674", "GSM2244675", "GSM2244676", "GSM2244677", "GSM2244678", "GSM2244679", "GSM2244680", "GSM2244681", "GSM2244682", "GSM2244683", "GSM2244684", "GSM2244685", "GSM2244686", "GSM2244687", "GSM2244688", "GSM2244689", "GSM2244690", "GSM2244691", "GSM2244692", "GSM2244693", "GSM2244694", "GSM2244695", "GSM2244696", "GSM2244697", "GSM2244698", "GSM2244699", "GSM2244700", "GSM2244701", "GSM2244702", "GSM2244703", "GSM2244704", "GSM2244705", "GSM2244706", "GSM2244707", "GSM2244708", "GSM2244709", "GSM2244710", "GSM2244711", "GSM2244712", "GSM2244713", "GSM2244714", "GSM2244715", "GSM2244716", "GSM2244717", "GSM2244718", "GSM2244719", "GSM2244720", "GSM2244721", "GSM2244722", "GSM2244723", "GSM2244724", "GSM2244725", "GSM2244726", "GSM2244727", "GSM2244728", "GSM2244729", "GSM2244730", "GSM2244731", "GSM2244732", "GSM2244733", "GSM2244734", "GSM2244735", "GSM2244736", "GSM2244737", "GSM2244738", "GSM2244739", "GSM2244740", "GSM2244741", "GSM2244742", "GSM2244743", "GSM2244744", "GSM2244745", "GSM2244746", "GSM2244747", "GSM2244748", "GSM2244749", "GSM2244750", "GSM2244751", "GSM2244752", "GSM2244753", "GSM2244754", "GSM2244755", "GSM2244756", "GSM2244757", "GSM2244758", "GSM2244759", "GSM2244760", "GSM2244761", "GSM2244762", "GSM2244763", "GSM2244764", "GSM2244765", "GSM2244766", "GSM2244767", "GSM2244768", "GSM2244769", "GSM2244770", "GSM2244771", "GSM2244772", "GSM2244773", "GSM2244774", "GSM2244775", "GSM2244776", "GSM2244777", "GSM2244778", "GSM2244779", "GSM2244780", "GSM2244781", "GSM2244782", "GSM2244783", "GSM2244784", "GSM2244785", "GSM2244786", "GSM2244787", "GSM2244788", "GSM2244789", "GSM2244790", "GSM2244791", "GSM2244792", "GSM2244793", "GSM2244794", "GSM2244795", "GSM2244796", "GSM2244797", "GSM2244798", "GSM2244799", "GSM2244800", "GSM2244801", "GSM2244802", "GSM2244803", "GSM2244804", "GSM2244805", "GSM2244806", "GSM2244807", "GSM2244808", "GSM2244809", "GSM2244810", "GSM2244811", "GSM2244812", "GSM2244813", "GSM2244814", "GSM2244815", "GSM2244816", "GSM2244817", "GSM2244818", "GSM2244819", "GSM2244820", "GSM2244821", "GSM2244822", "GSM2244823", "GSM2244824", "GSM2244825", "GSM2244826", "GSM2244827", "GSM2244828", "GSM2244829", "GSM2244830", "GSM2244831", "GSM2244832", "GSM2244833", "GSM2244834", "GSM2244835", "GSM2244836", "GSM2244837", "GSM2244838", "GSM2244839", "GSM2244840", "GSM2244841", "GSM2244842", "GSM2244843", "GSM2244844", "GSM2244845", "GSM2244846", 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"GSM2245060", "GSM2245061", "GSM2245062", "GSM2245063", "GSM2245064", "GSM2245065", "GSM2245066", "GSM2245067", "GSM2245068", "GSM2245069", "GSM2245070", "GSM2245071", "GSM2245072", "GSM2245073", "GSM2245074", "GSM2245075", "GSM2245076", "GSM2245077", "GSM2245078", "GSM2245079", "GSM2245080", "GSM2245081", "GSM2245082", "GSM2245083", "GSM2245084", "GSM2245085", "GSM2245086", "GSM2245087", "GSM2245088", "GSM2245089", "GSM2245090", "GSM2245091", "GSM2245092", "GSM2245093", "GSM2245094", "GSM2245095", "GSM2245096", "GSM2245097", "GSM2245098", "GSM2245099", "GSM2245100", "GSM2245101", "GSM2245102", "GSM2245103", "GSM2245104", "GSM2245105", "GSM2245106", "GSM2245107", "GSM2245108", "GSM2245109", "GSM2245110", "GSM2245111", "GSM2245112", "GSM2245113", "GSM2245114", "GSM2245115", "GSM2245116", "GSM2245117", "GSM2245118", "GSM2245119", "GSM2245120", "GSM2245121", "GSM2245122", "GSM2245123", "GSM2245124", "GSM2245125", "GSM2245126", "GSM2245127", "GSM2245128", "GSM2245129", "GSM2245130", "GSM2245131", "GSM2245132", "GSM2245133", "GSM2245134", "GSM2245135", "GSM2245136", "GSM2245137", "GSM2245138", "GSM2245139", "GSM2245140", "GSM2245141", "GSM2245142", "GSM2245143", "GSM2245144", "GSM2245145", "GSM2245146", "GSM2245147", "GSM2245148", "GSM2245149", "GSM2245150", "GSM2245151", "GSM2245152", "GSM2245153", "GSM2245154", "GSM2245155", "GSM2245156", "GSM2245157", "GSM2245158", "GSM2245159", "GSM2245160", "GSM2245161", "GSM2245162", "GSM2245163", "GSM2245164", "GSM2245165", "GSM2245166", "GSM2245167", "GSM2245168", "GSM2245169", "GSM2245170", "GSM2245171", "GSM2245172", "GSM2245173", "GSM2245174", "GSM2245175", "GSM2245176", "GSM2245177", "GSM2245178", "GSM2245179", "GSM2245180", "GSM2245181", "GSM2245182", "GSM2245183", "GSM2245184", "GSM2245185", "GSM2245186", "GSM2245187", "GSM2245188", "GSM2245189", "GSM2245190", "GSM2245191", "GSM2245192", "GSM2245193", "GSM2245194", "GSM2245195", "GSM2245196", "GSM2245197", "GSM2245198", "GSM2245199", "GSM2245200", "GSM2245201", "GSM2245202", "GSM2245203", "GSM2245204", "GSM2245205", "GSM2245206", "GSM2245207", "GSM2245208", "GSM2245209", "GSM2245210", "GSM2245211", "GSM2245212", "GSM2245213", "GSM2245214", "GSM2245215", "GSM2245216", "GSM2245217", "GSM2245218", "GSM2245219", "GSM2245220", "GSM2245221", "GSM2245222", "GSM2245223", "GSM2245224", "GSM2245225", "GSM2245226", "GSM2245227", "GSM2245228", "GSM2245229", "GSM2245230", "GSM2245231", "GSM2245232", "GSM2245233", "GSM2245234", "GSM2245235", "GSM2245236", "GSM2245237", "GSM2245238", "GSM2245239", "GSM2245240", "GSM2245241", "GSM2245242", "GSM2245243", "GSM2245244", "GSM2245245", "GSM2245246", "GSM2245247", "GSM2245248", "GSM2245249", "GSM2245250", "GSM2245251", "GSM2245252", "GSM2245253", "GSM2245254", "GSM2245255", "GSM2245256", "GSM2245257", "GSM2245258", "GSM2245259", "GSM2245260", "GSM2245261", "GSM2245262", "GSM2245263", "GSM2245264", "GSM2245265", "GSM2245266", "GSM2245267", "GSM2245268", "GSM2245269", "GSM2245270", "GSM2245271", "GSM2245272", 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"GSM2245344", "GSM2245345", "GSM2245346", "GSM2245347", "GSM2245348", "GSM2245349", "GSM2245350", "GSM2245351", "GSM2245352", "GSM2245353", "GSM2245354", "GSM2245355", "GSM2245356", "GSM2245357", "GSM2245358", "GSM2245359", "GSM2245360", "GSM2245361", "GSM2245362", "GSM2245363", "GSM2245364", "GSM2245365", "GSM2245366", "GSM2245367", "GSM2245368", "GSM2245369", "GSM2245370", "GSM2245371", "GSM2245372", "GSM2245373", "GSM2245374", "GSM2245375", "GSM2245376", "GSM2245377", "GSM2245378", "GSM2245379", "GSM2245380", "GSM2245381", "GSM2245382", "GSM2245383", "GSM2245384", "GSM2245385", "GSM2245386", "GSM2245387", "GSM2245388", "GSM2245389", "GSM2245390", "GSM2245391", "GSM2245392", "GSM2245393", "GSM2245394", "GSM2245395", "GSM2245396", "GSM2245397", "GSM2245398", "GSM2245399", "GSM2245400", "GSM2245401", "GSM2245402", "GSM2245403", "GSM2245404", "GSM2245405", "GSM2245406", "GSM2245407", "GSM2245408", "GSM2245409", "GSM2245410", "GSM2245411", "GSM2245412", "GSM2245413", "GSM2245414", "GSM2245415", "GSM2245416", "GSM2245417", "GSM2245418", "GSM2245419", "GSM2245420", "GSM2245421", "GSM2245422", "GSM2245423", "GSM2245424", "GSM2245425", "GSM2245426", "GSM2245427", "GSM2245428", "GSM2245429", "GSM2245430", "GSM2245431", "GSM2245432", "GSM2245433", "GSM2245434", "GSM2245435", "GSM2245436", "GSM2245437", "GSM2245438", "GSM2245439", "GSM2245440", "GSM2245441", "GSM2245442", "GSM2245443", "GSM2245444", "GSM2245445", "GSM2245446", "GSM2245447", "GSM2245448", "GSM2245449", "GSM2245450", "GSM2245451", "GSM2245452", "GSM2245453", "GSM2245454", "GSM2245455", "GSM2245456", "GSM2245457", "GSM2245458", "GSM2245459", "GSM2245460", "GSM2245461", "GSM2245462", "GSM2245463", "GSM2245464", "GSM2245465", "GSM2245466", "GSM2245467", "GSM2245468", "GSM2245469", "GSM2245470", "GSM2245471", "GSM2245472", "GSM2245473", "GSM2245474", "GSM2245475", "GSM2245476", "GSM2245477", "GSM2245478", "GSM2245479", "GSM2245480", "GSM2245481", "GSM2245482", "GSM2245483", "GSM2245484", "GSM2245485", "GSM2245486", "GSM2245487", "GSM2245488", "GSM2245489", "GSM2245490", "GSM2245491", "GSM2245492", "GSM2245493", "GSM2245494", "GSM2245495", "GSM2245496", "GSM2245497", "GSM2245498", "GSM2245499", "GSM2245500", "GSM2245501", "GSM2245502", "GSM2245503", "GSM2245504", "GSM2245505", "GSM2245506", "GSM2245507", "GSM2245508", "GSM2245509", "GSM2245510", "GSM2245511", "GSM2245512", "GSM2245513", "GSM2245514", "GSM2245515", "GSM2245516", "GSM2245517", "GSM2245518", "GSM2245519", "GSM2245520", "GSM2245521", "GSM2245522", "GSM2245523", "GSM2245524", "GSM2245525", "GSM2245526", "GSM2245527", "GSM2245528", "GSM2245529", "GSM2245530", "GSM2245531", "GSM2245532", "GSM2245533", "GSM2245534", "GSM2245535", "GSM2245536", "GSM2245537", "GSM2245538", "GSM2245539", "GSM2245540", "GSM2245541", "GSM2245542", "GSM2245543", "GSM2245544", "GSM2245545", "GSM2245546", "GSM2245547", "GSM2245548", "GSM2245549", "GSM2245550", "GSM2245551", "GSM2245552", "GSM2245553", "GSM2245554", "GSM2245555", "GSM2245556", "GSM2245557", "GSM2245558", "GSM2245559", "GSM2245560", "GSM2245561", "GSM2245562", "GSM2245563", "GSM2245564", "GSM2245565", "GSM2245566", "GSM2245567", "GSM2245568", "GSM2245569", "GSM2245570", "GSM2245571", "GSM2245572", "GSM2245573", "GSM2245574", "GSM2245575", "GSM2245576", "GSM2245577", "GSM2245578", "GSM2245579", "GSM2245580", "GSM2245581", "GSM2245582", "GSM2245583", "GSM2245584", "GSM2245585", "GSM2245586", "GSM2245587", "GSM2245588", "GSM2245589", "GSM2245590", "GSM2245591", "GSM2245592", "GSM2245593", "GSM2245594", "GSM2245595", "GSM2245596", "GSM2245597", "GSM2245598", "GSM2245599", "GSM2245600", "GSM2245601", "GSM2245602", "GSM2245603", "GSM2245604", "GSM2245605", "GSM2245606", "GSM2245607", "GSM2245608", "GSM2245609", "GSM2245610", "GSM2245611", "GSM2245612", "GSM2245613", "GSM2245614", "GSM2245615", "GSM2245616", "GSM2245617", "GSM2245618", "GSM2245619", "GSM2245620", "GSM2245621", "GSM2245622", "GSM2245623", "GSM2245624", "GSM2245625", "GSM2245626", "GSM2245627", "GSM2245628", "GSM2245629", "GSM2245630", "GSM2245631", "GSM2245632", "GSM2245633", "GSM2245634", "GSM2245635", "GSM2245636", "GSM2245637", "GSM2245638", "GSM2245639", "GSM2245640", "GSM2245641", "GSM2245642", "GSM2245643", "GSM2245644", "GSM2245645", "GSM2245646", "GSM2245647", "GSM2245648", "GSM2245649", "GSM2245650", "GSM2245651", "GSM2245652", "GSM2245653", "GSM2245654", "GSM2245655", "GSM2245656", "GSM2245657", "GSM2245658", "GSM2245659", "GSM2245660", "GSM2245661", "GSM2245662", "GSM2245663", "GSM2245664", "GSM2245665", "GSM2245666", "GSM2245667", "GSM2245668", "GSM2245669", "GSM2245670", "GSM2245671", "GSM2245672", "GSM2245673", "GSM2245674", "GSM2245675", "GSM2245676", "GSM2245677", "GSM2245678", "GSM2245679", "GSM2245680", "GSM2245681", "GSM2245682", "GSM2245683", "GSM2245684", "GSM2245685", "GSM2245686", "GSM2245687", "GSM2245688", "GSM2245689", "GSM2245690", "GSM2245691", "GSM2245692", "GSM2245693", "GSM2245694", "GSM2245695", "GSM2245696", "GSM2245697", "GSM2245698", "GSM2245699", "GSM2245700", "GSM2245701", "GSM2245702", "GSM2245703", "GSM2245704", "GSM2245705", "GSM2245706", "GSM2245707", "GSM2245708", "GSM2245709", "GSM2245710", "GSM2245711", "GSM2245712", "GSM2245713", "GSM2245714", "GSM2245715", "GSM2245716", "GSM2245717", "GSM2245718", "GSM2245719", "GSM2245720", "GSM2245721", "GSM2245722", "GSM2245723", "GSM2245724", "GSM2245725", "GSM2245726", "GSM2245727", "GSM2245728", "GSM2245729", "GSM2245730", "GSM2245731", "GSM2245732", "GSM2245733", "GSM2245734", "GSM2245735", "GSM2245736", "GSM2245737", "GSM2245738", "GSM2245739", "GSM2245740", "GSM2245741", "GSM2245742", "GSM2245743", "GSM2245744", "GSM2245745", "GSM2245746", "GSM2245747", "GSM2245748", "GSM2245749", "GSM2245750", "GSM2245751", "GSM2245752", "GSM2245753", "GSM2245754", "GSM2245755", "GSM2245756", "GSM2245757", "GSM2245758", "GSM2245759", "GSM2245760", "GSM2245761", "GSM2245762", "GSM2245763", "GSM2245764", "GSM2245765", "GSM2245766", "GSM2245767", "GSM2245768", "GSM2245769", "GSM2245770", "GSM2245771", "GSM2245772", "GSM2245773", "GSM2245774", "GSM2245775", "GSM2245776", "GSM2245777", "GSM2245778", "GSM2245779", "GSM2245780", "GSM2245781", "GSM2245782", "GSM2245783", "GSM2245784", "GSM2245785", "GSM2245786", "GSM2245787", "GSM2245788", "GSM2245789", "GSM2245790", "GSM2245791", "GSM2245792", "GSM2245793", "GSM2245794", "GSM2245795", "GSM2245796", "GSM2245797", "GSM2245798", "GSM2245799", "GSM2245800", "GSM2245801", "GSM2245802", "GSM2245803", "GSM2245804", "GSM2245805", "GSM2245806", "GSM2245807", "GSM2245808", "GSM2245809", "GSM2245810", "GSM2245811", "GSM2245812", "GSM2245813", "GSM2245814", "GSM2245815", "GSM2245816", "GSM2245817", "GSM2245818", "GSM2245819", "GSM2245820", "GSM2245821", "GSM2245822", "GSM2245823", "GSM2245824", "GSM2245825", "GSM2245826", "GSM2245827", "GSM2245828", "GSM2245829", "GSM2245830", "GSM2245831", "GSM2245832", "GSM2245833", "GSM2245834", "GSM2245835", "GSM2245836", "GSM2245837", "GSM2245838", "GSM2245839", "GSM2245840", "GSM2245841", "GSM2245842", "GSM2245843", "GSM2245844", "GSM2245845", "GSM2245846", "GSM2245847", "GSM2245848", "GSM2245849", "GSM2245850", "GSM2245851", "GSM2245852", "GSM2245853", "GSM2245854", "GSM2245855", "GSM2245856", "GSM2245857", "GSM2245858", "GSM2245859", "GSM2245860", "GSM2245861", "GSM2245862", "GSM2245863", "GSM2245864", "GSM2245865", "GSM2245866", "GSM2245867", "GSM2245868", "GSM2245869", "GSM2245870", "GSM2245871", "GSM2245872", "GSM2245873", "GSM2245874", "GSM2245875", "GSM2245876", "GSM2245877", "GSM2245878", "GSM2245879", "GSM2245880", "GSM2245881", "GSM2245882", "GSM2245883", "GSM2245884", "GSM2245885", "GSM2245886", "GSM2245887", "GSM2245888", "GSM2245889", "GSM2245890", "GSM2245891", "GSM2245892", "GSM2245893", "GSM2245894", "GSM2245895", "GSM2245896", "GSM2245897", "GSM2245898", "GSM2245899", "GSM2245900", "GSM2245901", "GSM2245902", "GSM2245903", "GSM2245904", "GSM2245905", "GSM2245906", "GSM2245907", "GSM2245908", "GSM2245909", "GSM2245910", "GSM2245911", 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CONCLUSION: T", "ectively. Processing and Analysis of the GBM scRNA-Seq Data A total of 3589 single cells from 4 GBM", "rom 4 GBM cases were obtained in this study. ScRNA-seq data analysis was performed with Seurat R pa", "ing the SCTransform method. PCA was used for scRNA-seq data dimension reduction.30 First 30 princip"], "order_basis": "paper_text_order:1477", "id": "assay:1"}, {"role": "data_generation", "definition_id": "rna_seq", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["on seven independent algorithms, single-cell RNA-seq data and immunohistochemistry. CONCLUSION: T", "(CNAs), which corresponded to the cases with RNA-seq data, were downloaded from TCGA database. We"], "order_basis": "paper_text_order:1489", "id": "assay:2"}, {"role": "data_generation", "definition_id": "ihc", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["ent algorithms, single-cell RNA-seq data and immunohistochemistry. CONCLUSION: These findings implicate that C", "CTLA4 expression cells was then computed in IHC analysis. All analyses were performed using"], "order_basis": "paper_text_order:1506", "id": "assay:3"}, {"role": "analysis", "definition_id": "correlation_analysis", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["pearson_r"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["The Pearsons’ correlation coefficient between the H-score of CD68 and the number of CTLA4 expression cells was then computed in IHC analysis."], "order_basis": "consumes_earlier_output", "id": "assay:4"}]}