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pmid:35222645

Development and Validation of a Necroptosis-Related Prognostic Model in Head and Neck Squamous Cell Carcinoma.

Zhijing Zhang · Xinglin Hu · Dan Qiu · Yuchen Sun · Lei Lei

Journal of oncology · 2022 doi:10.1155/2022/8402568

Paper

complete

Experiment

complete

Data

partial

Analysis

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Execution

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title
Development and Validation of a Necroptosis-Related Prognostic Model in Head and Neck Squamous Cell Carcinoma.
doi
10.1155/2022/8402568
pmid
35222645
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Zhijing Zhang
[1]
Xinglin Hu
[2]
Dan Qiu
[3]
Yuchen Sun
[4]
Lei Lei
journal
Journal of oncology
year
2022
abstract
Necroptosis is a new regulated cell-death mechanism that plays a critical role in various cancers. However, few studies have considered necroptosis-related genes (NRGs) as prognostic indexes for cancer. As one of the most common cancers in the world, head and neck squamous cell carcinoma (HNSCC) lacks effective diagnostic strategies at present. Hence, a series of novel prognostic indexes are required to support clinical diagnosis. Recently, many studies have confirmed that necroptosis was a key regulated mechanism in HNSCC, but no systematic study has ever studied the correlation between necroptosis-related signatures and the prognosis of HNSCC. Thus, in the current study, we aimed to construct a risk model of necroptosis-related signatures for HNSCC. We acquired 159 NRGs from the Kyoto Encyclopedia of Genes and Genomes (KEGG) and compared them with samples of normal tissue downloaded from The Cancer Genome Atlas (TCGA), ultimately screening 38 differentially expressed NRGs (DE-NRGs). Then, by Cox regression analysis, we successfully identified 7 NRGs as prognostic factors. We next separated patients into high- and low-risk groups via the prognostic model consisting of 7 NRGs. Individuals in the high-risk group had much shorter overall survival (OS) times than their counterparts. Furthermore, using Cox regression analysis, we confirmed the necroptosis-related prognostic model to be an independent prognostic factor for HNSCC. Receiver operating characteristic (ROC) curve analysis proved the predictive ability of this model. Finally, Gene Expression Omnibus (GEO) data sets (GSE65858, GSE4163) were used as independent databases to verify the model's predictive ability, and similar results obtained from two data sets confirmed our conclusion. Collectively, in this study, we first referred to necroptosis-related signatures as an independent prognostic model for cancer via bioinformatics measures, and the necroptosis-related prognostic model we constructed could precisely forecast the OS time of patients with HNSCC. Utilizing the model may significantly improve the diagnostic rate and provide a series of new targets for treatment in the future.
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Using a univariate Cox regression analysis, we recognized the candidate NRGs associated with prognosis. Furthermore, a multivariate Cox regression analysis was implemented to evaluate NRGs screened by the univariate Cox regression analysis.
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Using a univariate Cox regression analysis, we recognized the candidate NRGs associated with prognosis. Furthermore, a multivariate Cox regression analysis was implemented to evaluate NRGs screened by the univariate Cox regression analysis.
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Finally, Gene Expression Omnibus (GEO) data sets (GSE65858, GSE4163) were used as independent databases to verify the model's predictive ability, and similar results obtained from two data sets confirmed our conclusion.
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Gene expression patterns and TP53 mutations are associated with HPV RNA status, lymph node metastasis, and survival in head and neck cancer
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logical processes of DE-NRGs mainly included apoptosis, necrosis, chromatin silencing, and epigenet
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Using a univariate Cox regression analysis, we recognized the candidate NRGs associated with prognosis. Furthermore, a multivariate Cox regression analysis was implemented to evaluate NRGs screened by the univariate Cox regression analysis.
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Complete file
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As one of the most common cancers in the world, head and neck squamous cell carcinoma (HNSCC) lacks effective diagnostic strategies at present. Hence, a series of novel prognostic indexes are required to support clinical diagnosis. Recently, many studies have confirmed that necroptosis was a key regulated mechanism in HNSCC, but no systematic study has ever studied the correlation between necroptosis-related signatures and the prognosis of HNSCC. Thus, in the current study, we aimed to construct a risk model of necroptosis-related signatures for HNSCC. We acquired 159 NRGs from the Kyoto Encyclopedia of Genes and Genomes (KEGG) and compared them with samples of normal tissue downloaded from The Cancer Genome Atlas (TCGA), ultimately screening 38 differentially expressed NRGs (DE-NRGs). Then, by Cox regression analysis, we successfully identified 7 NRGs as prognostic factors. We next separated patients into high- and low-risk groups via the prognostic model consisting of 7 NRGs. Individuals in the high-risk group had much shorter overall survival (OS) times than their counterparts. Furthermore, using Cox regression analysis, we confirmed the necroptosis-related prognostic model to be an independent prognostic factor for HNSCC. Receiver operating characteristic (ROC) curve analysis proved the predictive ability of this model. Finally, Gene Expression Omnibus (GEO) data sets (GSE65858, GSE4163) were used as independent databases to verify the model's predictive ability, and similar results obtained from two data sets confirmed our conclusion. Collectively, in this study, we first referred to necroptosis-related signatures as an independent prognostic model for cancer via bioinformatics measures, and the necroptosis-related prognostic model we constructed could precisely forecast the OS time of patients with HNSCC. Utilizing the model may significantly improve the diagnostic rate and provide a series of new targets for treatment in the future.", "claims": [{"id": "claim-method", "statement": "Using a univariate Cox regression analysis, we recognized the candidate NRGs associated with prognosis. Furthermore, a multivariate Cox regression analysis was implemented to evaluate NRGs screened by the univariate Cox regression analysis.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:35222645", "locator": "sections[6] \"2.4. Establishment of the Prognostic Model\" paragraph 2", "quote": "Using a univariate Cox regression analysis, we recognized the candidate NRGs associated with prognosis. 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