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pmid:35368686

Pyroptosis-Related Risk Signature Exhibits Distinct Prognostic, Immune, and Therapeutic Landscapes in Hepatocellular Carcinoma.

Yidi Zhao · Qingya Song · Fangshi Xu · Yang Zhou · Xiaoli Zuo · Zhengliang Zhang

Frontiers in genetics · 2022 doi:10.3389/fgene.2022.823443

Paper

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pmid:35368686
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2026-11-01T18:14:11Z
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title
Pyroptosis-Related Risk Signature Exhibits Distinct Prognostic, Immune, and Therapeutic Landscapes in Hepatocellular Carcinoma.
doi
10.3389/fgene.2022.823443
pmid
35368686
authors array · 6 items
[0]
Yidi Zhao
[1]
Qingya Song
[2]
Fangshi Xu
[3]
Yang Zhou
[4]
Xiaoli Zuo
[5]
Zhengliang Zhang
journal
Frontiers in genetics
year
2022
abstract
Background: Hepatocellular carcinoma (HCC) is a common abdominal cancer. The existing therapeutic approaches often fail to achieve satisfactory results. Pyroptosis, an inflammatory form of programmed cell death, provides new ideas for anticancer treatment. However, the roles of pyroptosis-related (PR) genes (PRGs) in HCC remain elusive. Methods: Differentially expressed genes (DEGs) (n = 22) were screened out using TCGA and GTEx databases. A novel PR risk signature was constructed through Lasso regression analysis. Its prognostic value was evaluated through a series of survival analyses and was tested in ICGC and GSE14520 cohorts. CIBERSORT, ssGSEA, and ESTIMATE methods were employed to determine the effects of the PR risk score on the tumor immune microenvironment (TIM). The TIDE scoring system, IMvigor210 cohort, GSE109211 dataset, and GSDC database were applied to explore the associations of the PR risk score with therapeutic effects. The biofunctions of WNK1 in hepatocellular cancer (HC) cells were confirmed through qPCR, colony formation, and Transwell assays. Results: Overall, 22 of 45 PRGs (48.9%) were abnormally expressed in HCC samples. Then, a PR risk signature consisting of eight PRGs was constructed. A high PR risk score led to an unfavorable prognosis. The PR risk score was identified as an independent prognostic factor of HCC and could increase the decision-making benefit of the traditional TNM model. In addition, we established a nomogram containing the clinical stage and PR risk score to predict the survival rates of HCC patients. The prognostic value of the PR model was successfully validated in ICGC and GSE14520 cohorts. Moreover, high PR risk conferred the decreased infiltration level of CD8+ T cells and weakened the activities of "cytolytic activity" pathways. As for therapeutic correlation, a high PR risk score seemed to imply a poor efficacy of PD-1/L1 inhibitors and sorafenib. Finally, the overexpression of WNK1 could promote the proliferation, migration, and invasion of HC cells. Conclusions: The PR risk score was closely related to the prognosis, antitumor immune process, therapeutic outcomes, and malignant progression of HCC. WNK1, the core regulator of pyroptosis, possesses pro-oncogenic abilities, showing promise as a novel treatment target.
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A novel PR risk signature was constructed through Lasso regression analysis.
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The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding author.
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Gene expression data of human hepatocellular carcinoma (HCC)
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A novel PR risk signature was constructed through Lasso regression analysis.
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lar cancer (HC) cells were confirmed through qPCR, colony formation, and Transwell assays. Res
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Materials and Methods Cell Culture and Transfection Two human hepatocellular cancer cell lines (
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and 1% P/S (Procell, Wuhan, China). Specific shRNA and amplification plasmids were designed by
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an, China). HepG2 and THLE-3 cells were both cultured in Minimum Essential Medium (MEM) containing 10
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S) (Procell, Wuhan, China). Huh-7 cells were cultured in Dulbecco’s modified Eagle medium (DMEM) cont
[2]
Two human hepatocellular cancer cell lines (HepG2 and Huh-7) and one normal liver cell line (T
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enghui Biotechnology Company (Hunan, China). HepG2 and THLE-3 cells were both cultured in Minim
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Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:35368686", "kind": "science-record", "revision": 4, "content_hash": "sha256:d871af23a838d4452d3fb1f1cbfaf2637846f0666150b1f4893e3d02754b39c5", "created_at": "2026-11-01T18:14:11Z", "updated_at": "2026-11-01T22:06:14Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Pyroptosis-Related Risk Signature Exhibits Distinct Prognostic, Immune, and Therapeutic Landscapes in Hepatocellular Carcinoma.", "doi": "10.3389/fgene.2022.823443", "pmid": "35368686", "authors": ["Yidi Zhao", "Qingya Song", "Fangshi Xu", "Yang Zhou", "Xiaoli Zuo", "Zhengliang Zhang"], "journal": "Frontiers in genetics", "year": 2022, "abstract": "Background: Hepatocellular carcinoma (HCC) is a common abdominal cancer. The existing therapeutic approaches often fail to achieve satisfactory results. Pyroptosis, an inflammatory form of programmed cell death, provides new ideas for anticancer treatment. However, the roles of pyroptosis-related (PR) genes (PRGs) in HCC remain elusive. Methods: Differentially expressed genes (DEGs) (n = 22) were screened out using TCGA and GTEx databases. A novel PR risk signature was constructed through Lasso regression analysis. Its prognostic value was evaluated through a series of survival analyses and was tested in ICGC and GSE14520 cohorts. CIBERSORT, ssGSEA, and ESTIMATE methods were employed to determine the effects of the PR risk score on the tumor immune microenvironment (TIM). The TIDE scoring system, IMvigor210 cohort, GSE109211 dataset, and GSDC database were applied to explore the associations of the PR risk score with therapeutic effects. The biofunctions of WNK1 in hepatocellular cancer (HC) cells were confirmed through qPCR, colony formation, and Transwell assays. Results: Overall, 22 of 45 PRGs (48.9%) were abnormally expressed in HCC samples. Then, a PR risk signature consisting of eight PRGs was constructed. A high PR risk score led to an unfavorable prognosis. The PR risk score was identified as an independent prognostic factor of HCC and could increase the decision-making benefit of the traditional TNM model. In addition, we established a nomogram containing the clinical stage and PR risk score to predict the survival rates of HCC patients. The prognostic value of the PR model was successfully validated in ICGC and GSE14520 cohorts. Moreover, high PR risk conferred the decreased infiltration level of CD8+ T cells and weakened the activities of \"cytolytic activity\" pathways. As for therapeutic correlation, a high PR risk score seemed to imply a poor efficacy of PD-1/L1 inhibitors and sorafenib. Finally, the overexpression of WNK1 could promote the proliferation, migration, and invasion of HC cells. Conclusions: The PR risk score was closely related to the prognosis, antitumor immune process, therapeutic outcomes, and malignant progression of HCC. 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