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pmid:35572136

Platelet Activating Factor Receptor Exaggerates Microglia-Mediated Microenvironment by IL10-STAT3 Signaling: A Novel Potential Biomarker and Target for Diagnosis and Treatment of Alzheimer's Disease.

Junxiu Liu · Linchi Jiao · Xin Zhong · Weifan Yao · Ke Du · Senxu Lu · Yuqiang Wu · Tianxin Ma · Junhui Tong · Mingyue Xu · Wenjuan Jiang · Yubao Wang · Miao He · Wei Xin · Mingyan Liu

Frontiers in aging neuroscience · 2022 doi:10.3389/fnagi.2022.856628

Paper

complete

Experiment

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Data

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Analysis

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Execution

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title
Platelet Activating Factor Receptor Exaggerates Microglia-Mediated Microenvironment by IL10-STAT3 Signaling: A Novel Potential Biomarker and Target for Diagnosis and Treatment of Alzheimer's Disease.
doi
10.3389/fnagi.2022.856628
pmid
35572136
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Junxiu Liu
[1]
Linchi Jiao
[2]
Xin Zhong
[3]
Weifan Yao
[4]
Ke Du
[5]
Senxu Lu
[6]
Yuqiang Wu
[7]
Tianxin Ma
[8]
Junhui Tong
[9]
Mingyue Xu
[10]
Wenjuan Jiang
[11]
Yubao Wang
[12]
Miao He
[13]
Wei Xin
[14]
Mingyan Liu
journal
Frontiers in aging neuroscience
year
2022
abstract
Background: Early diagnosis and effective intervention are the keys to delaying the progression of Alzheimer's Disease (AD). Therefore, we aimed to identify new biomarkers for the early diagnosis of AD through bioinformatic analysis and elucidate the possible underlying mechanisms. Methods and Results: GSE1297, GSE63063, and GSE110226 datasets from the GEO database were used to screen the highly differentially expressed genes. We identified a potential biomarker, Platelet activating factor receptor (PTAFR), significantly upregulated in the brain tissue, peripheral blood, and cerebrospinal fluid of AD patients. Furthermore, PTAFR levels in the plasma and brain tissues of APP/PS1 mice were significantly elevated. Simultaneously, PTAFR could mediate the inflammatory responses to exaggerate the microenvironment, particularly mediated by the microglia through the IL10-STAT3 pathway. In addition, PTAFR was a putative target of anti-AD compounds, including EGCG, donepezil, curcumin, memantine, and Huperzine A. Conclusion: PTAFR was a potential biomarker for early AD diagnosis and treatment which correlated with the microglia-mediated microenvironment. It is an important putative target for the development of a novel strategy for clinical treatment and drug discovery for AD.
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PTAFR was a potential biomarker for early AD diagnosis and treatment which correlated with the microglia-mediated microenvironment.
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Comparative Transcriptomics of Choroid Plexus in Alzheimer's Disease, Huntington's Disease and Frontotemporal Dementia: Implications for CSF Homeostasis and Dynamics
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[363]
GSM1539443
[364]
GSM1539444
[365]
GSM1539445
[366]
GSM1539446
[367]
GSM1539447
[368]
GSM1539448
[369]
GSM1539449
[370]
GSM1539450
[371]
GSM1539451
[372]
GSM1539452
[373]
GSM1539453
[374]
GSM1539454
[375]
GSM1539455
[376]
GSM1539456
[377]
GSM1539457
[378]
GSM1539458
[379]
GSM1539459
[380]
GSM1539460
[381]
GSM1539461
[382]
GSM1539462
[383]
GSM1539463
[384]
GSM1539464
[385]
GSM1539465
[386]
GSM1539466
[387]
GSM1539467
[388]
GSM1539468
[389]
GSM1539469
[390]
GSM1539470
[391]
GSM1539471
[392]
GSM1539472
[393]
GSM1539473
[394]
GSM1539474
[395]
GSM1539475
[396]
GSM1539476
[397]
GSM1539477
[398]
GSM1539478
[399]
GSM1539479
[400]
GSM1539480
[401]
GSM1539481
[402]
GSM1539482
[403]
GSM1539483
[404]
GSM1539484
[405]
GSM1539485
[406]
GSM1539486
[407]
GSM1539487
[408]
GSM1539488
[409]
GSM1539489
[410]
GSM1539490
[411]
GSM1539491
[412]
GSM1539492
[413]
GSM1539493
[414]
GSM1539494
[415]
GSM1539495
[416]
GSM1539496
[417]
GSM1539497
[418]
GSM1539498
[419]
GSM1539499
[420]
GSM1539500
[421]
GSM1539501
[422]
GSM1539502
[423]
GSM1539503
[424]
GSM1539504
[425]
GSM1539505
[426]
GSM1539506
[427]
GSM1539507
[428]
GSM1539508
[429]
GSM1539509
[430]
GSM1539510
[431]
GSM1539511
[432]
GSM1539512
[433]
GSM1539513
[434]
GSM1539514
[435]
GSM1539515
[436]
GSM1539516
[437]
GSM1539517
[438]
GSM1539518
[439]
GSM1539519
[440]
GSM1539520
[441]
GSM1539521
[442]
GSM1539522
[443]
GSM1539523
[444]
GSM1539524
[445]
GSM1539525
[446]
GSM1539526
[447]
GSM1539527
[448]
GSM1539528
[449]
GSM1539529
[450]
GSM1539530
[451]
GSM1539531
[452]
GSM1539532
[453]
GSM1539533
[454]
GSM1539534
[455]
GSM1539535
[456]
GSM1539536
[457]
GSM1539537
[458]
GSM1539538
[459]
GSM1539539
[460]
GSM1539540
[461]
GSM1539541
[462]
GSM1539542
[463]
GSM1539543
[464]
GSM1539544
[465]
GSM1539545
[466]
GSM1539546
[467]
GSM1539547
[468]
GSM1539548
[469]
GSM1539549
[470]
GSM1539550
[471]
GSM1539551
[472]
GSM1539552
[473]
GSM1539553
[474]
GSM1539554
[475]
GSM1539555
[476]
GSM1539556
[477]
GSM1539557
[478]
GSM1539558
[479]
GSM1539559
[480]
GSM1539560
[481]
GSM1539561
[482]
GSM1539562
[483]
GSM1539563
[484]
GSM1539564
[485]
GSM1539565
[486]
GSM1539566
[487]
GSM1539567
[488]
GSM1539568
[489]
GSM1539569
[490]
GSM1539570
[491]
GSM1539571
[492]
GSM1539572
[493]
GSM1539573
[494]
GSM1539574
[495]
GSM1539575
[496]
GSM1539576
[497]
GSM1539577
[498]
GSM1539578
[499]
GSM1539579
[500]
GSM1539580
[501]
GSM1539581
[502]
GSM1539582
[503]
GSM1539583
[504]
GSM1539584
[505]
GSM1539585
[506]
GSM1539586
[507]
GSM1539587
[508]
GSM1539588
[509]
GSM1539589
[510]
GSM1539590
[511]
GSM1539591
[512]
GSM1539592
[513]
GSM1539593
[514]
GSM1539594
[515]
GSM1539595
[516]
GSM1539596
[517]
GSM1539597
[518]
GSM1539598
[519]
GSM1539599
[520]
GSM1539600
[521]
GSM1539601
[522]
GSM1539602
[523]
GSM1539603
[524]
GSM1539604
[525]
GSM1539605
[526]
GSM1539606
[527]
GSM1539607
[528]
GSM1539608
[529]
GSM1539609
[530]
GSM1539610
[531]
GSM1539611
[532]
GSM1539612
[533]
GSM1539613
[534]
GSM1539614
[535]
GSM1539615
[536]
GSM1539616
[537]
GSM1539617
[538]
GSM1539618
[539]
GSM1539619
[540]
GSM1539620
[541]
GSM1539621
[542]
GSM1539622
[543]
GSM1539623
[544]
GSM1539624
[545]
GSM1539625
[546]
GSM1539626
[547]
GSM1539627
[548]
GSM1539628
[549]
GSM1539629
[550]
GSM1539630
[551]
GSM1539631
[552]
GSM1539632
[553]
GSM1539633
[554]
GSM1539634
[555]
GSM1539635
[556]
GSM1539636
[557]
GSM1539637
[558]
GSM1539638
[559]
GSM1539639
[560]
GSM1539640
[561]
GSM1539641
[562]
GSM1539642
[563]
GSM1539643
[564]
GSM1539644
[565]
GSM1539645
[566]
GSM1539646
[567]
GSM1539647
[568]
GSM1539648
[569]
GSM1539649
[570]
GSM1539650
[571]
GSM1539651
[572]
GSM1539652
[573]
GSM1539653
[574]
GSM1539654
[575]
GSM1539655
[576]
GSM1539656
[577]
GSM1539657
[578]
GSM1539658
[579]
GSM1539659
[580]
GSM1539660
[581]
GSM1539661
[582]
GSM1539662
[583]
GSM1539663
[584]
GSM1539664
[585]
GSM1539665
[586]
GSM1539666
[587]
GSM1539667
[588]
GSM1539668
[589]
GSM1539669
[590]
GSM1539670
[591]
GSM1539671
[592]
GSM1539672
[593]
GSM1539673
[594]
GSM1539674
[595]
GSM1539675
[596]
GSM1539676
[597]
GSM1539677
[598]
GSM1539678
[599]
GSM1539679
[600]
GSM1539680
[601]
GSM1539681
[602]
GSM1539682
[603]
GSM1539683
[604]
GSM1539684
[605]
GSM1539685
[606]
GSM1539686
[607]
GSM1539687
[608]
GSM1539688
[609]
GSM1539689
[610]
GSM1539690
[611]
GSM1539691
[612]
GSM1539692
[613]
GSM1539693
[614]
GSM1539694
[615]
GSM1539695
[616]
GSM1539696
[617]
GSM1539697
[618]
GSM1539698
[619]
GSM1539699
[620]
GSM1539700
[621]
GSM1539701
[622]
GSM1539702
[623]
GSM1539703
[624]
GSM1539704
[625]
GSM1539705
[626]
GSM1539706
[627]
GSM1539707
[628]
GSM1539708
[629]
GSM1539709
[630]
GSM1539710
[631]
GSM1539711
[632]
GSM1539712
[633]
GSM1539713
[634]
GSM1539714
[635]
GSM1539715
[636]
GSM1539716
[637]
GSM1539717
[638]
GSM1539718
[639]
GSM1539719
[640]
GSM1539720
[641]
GSM1539721
[642]
GSM1539722
[643]
GSM1539723
[644]
GSM1539724
[645]
GSM1539725
[646]
GSM1539726
[647]
GSM1539727
[648]
GSM1539728
[649]
GSM1539729
[650]
GSM1539730
[651]
GSM1539731
[652]
GSM1539732
[653]
GSM1539733
[654]
GSM1539734
[655]
GSM1539735
[656]
GSM1539736
[657]
GSM1539737
[658]
GSM1539738
[659]
GSM1539739
[660]
GSM1539740
[661]
GSM1539741
[662]
GSM1539742
[663]
GSM1539743
[664]
GSM1539744
[665]
GSM1539745
[666]
GSM1539746
[667]
GSM1539747
[668]
GSM1539748
[669]
GSM1539749
[670]
GSM1539750
[671]
GSM1539751
[672]
GSM1539752
[673]
GSM1539753
[674]
GSM1539754
[675]
GSM1539755
[676]
GSM1539756
[677]
GSM1539757
[678]
GSM1539758
[679]
GSM1539759
[680]
GSM1539760
[681]
GSM1539761
[682]
GSM1539762
[683]
GSM1539763
[684]
GSM1539764
[685]
GSM1539765
[686]
GSM1539766
[687]
GSM1539767
[688]
GSM1539768
[689]
GSM1539769
[690]
GSM1539770
[691]
GSM1539771
[692]
GSM1539772
[693]
GSM1539773
[694]
GSM1539774
[695]
GSM1539775
[696]
GSM1539776
[697]
GSM1539777
[698]
GSM1539778
[699]
GSM1539779
[700]
GSM1539780
[701]
GSM1539781
[702]
GSM1539782
[703]
GSM1539783
[704]
GSM1539784
[705]
GSM1539785
[706]
GSM1539786
[707]
GSM1539787
[708]
GSM1539788
[709]
GSM1539789
[710]
GSM1539790
[711]
GSM1539791
[712]
GSM1539792
[713]
GSM1539793
[714]
GSM1539794
[715]
GSM1539795
[716]
GSM1539796
sample_count
717
group_sizes
null
group_sizes_basis
null
platform
10558;6947
taxon
Homo sapiens
title
Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
gaps array · 6 items
[0]
asset:data:geo:GSE110226 not downloaded
[1]
asset:data:geo:GSE110226 licence not read
[2]
asset:data:geo:GSE1297 not downloaded
[3]
asset:data:geo:GSE1297 licence not read
[4]
asset:data:geo:GSE63063 not downloaded
[5]
asset:data:geo:GSE63063 licence not read
analysis object · 4 fields
state
complete
methods array · 2 items
[0] object · 10 fields
id
method-1
family
group_comparison
specific
anova
label
Group comparison
dsl_operations array · 4 items
[0]
group_summary
[1]
welch_t
[2]
bootstrap_mean_difference
[3]
group_comparison_anova
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
1
band
verbatim
quote
Differences between groups were evaluated by one-way analysis of variance.
[1] object · 10 fields
id
method-2
family
regression_modelling
specific
ols
label
Regression modelling
dsl_operations array · 1 item
[0]
ols_fit
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
predictors_and_outcome
evidence object · 3 fields
score
0.8
band
high
quote
linear regression
targets array · 0 items
gaps array · 0 items
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
true
required_operations array · 4 items
[0]
group_summary
[1]
welch_t
[2]
bootstrap_mean_difference
[3]
group_comparison_anova
missing_operations array · 0 items
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: anova.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 3 items
[0]
GSE1297
[1]
GSE63063
[2]
GSE110226
resolved_accessions array · 3 items
[0]
GSE1297
[1]
GSE63063
[2]
GSE110226
statements array · 1 item
[0]
The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding authors.
basis
The paper names GSE1297, GSE63063, GSE110226 in Gene Expression Omnibus (GEO) database and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 4 items
[0]
group_summary
[1]
welch_t
[2]
bootstrap_mean_difference
[3]
group_comparison_anova
assets array · 2 items
[0]
source:pmid:35572136
[1]
data:geo:GSE110226
steps array · 1 item
[0]
run_analysis
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE110226
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-11-01T17:46:16Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
5
usage object · 3 fields
prompt_tokens
12653
completion_tokens
1108
cached_tokens
128
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:35572136
type
paper
label
pmid:35572136
[1] object · 3 fields
id
source:pmid:35572136
type
manuscript
label
PMID 35572136 full text
[2] object · 3 fields
id
data:geo:GSE110226
type
dataset
label
GEO GSE110226
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:35572136
type
paper
label
pmid:35572136
[1] object · 3 fields
id
source:pmid:35572136
type
manuscript
label
PMID 35572136 full text
[2] object · 3 fields
id
data:geo:GSE110226
type
dataset
label
GEO GSE110226
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-35572136
type
extraction
used array · 1 item
[0]
source:pmid:35572136
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE110226
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE110226
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:35572136
parent_hash
sha256:65e787de17ed61c1b3d8bfc1805ed80db886ca794e91dcd1c96f82cfd780d5df
fork_of
null
gaps array · 10 items
[0]
asset:data:geo:GSE110226 licence not read
[1]
asset:data:geo:GSE110226 not downloaded
[2]
asset:data:geo:GSE1297 licence not read
[3]
asset:data:geo:GSE1297 not downloaded
[4]
asset:data:geo:GSE63063 licence not read
[5]
asset:data:geo:GSE63063 not downloaded
[6]
execution.not_run
[7]
review.human_critique
[8]
review.independent_reader
[9]
review.machine_critique
assays array · 5 items
[0] object · 11 fields
role
data_generation
definition_id
animal_model
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.99
evidence array · 4 items
[0]
s in the plasma and brain tissues of APP/PS1 mice were significantly elevated. Simultaneously, PTAF
[1]
Samples and Blood Samples Collection C57BL/6 mice were obtained from the Experimental Animal Center
[2]
ty (Shenyang, China), and APP/PS1 transgenic mice were obtained from Jackson laboratory (Maine, USA
[3]
our experiment are BV2, SH-SY5Y, and SVGp12. Mouse-derived microglial BV2 cells and human-deriv
order_basis
paper_text_order:842
id
assay:1
[1] object · 11 fields
role
data_generation
definition_id
western_blot
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.93
evidence array · 1 item
[0]
l., 2016). The right hemisphere was used for Western Blotting, while the left hemisphere was immersed in p
order_basis
paper_text_order:2436
id
assay:2
[2] object · 11 fields
role
data_generation
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.93
evidence array · 1 item
[0]
isphere was immersed in paraformaldehyde for immunofluorescence staining. Blood was obtained from the orbit.
order_basis
paper_text_order:2517
id
assay:3
[3] object · 11 fields
role
data_generation
definition_id
cell_culture
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.99
evidence array · 4 items
[0]
jing, China). Both BV2 and SVGp12 cells were cultured in DMEM medium (Invitrogen, Chicago, IL, United
[1]
, IL, United States), and SH-SY5Y cells were cultured in DMEM/F12 medium (Invitrogen, Chicago, IL, Un
[2]
re The cells used in our experiment are BV2, SH-SY5Y, and SVGp12. Mouse-derived microglial BV2 ce
[3]
al BV2 cells and human-derived neuroblastoma SH-SY5Y cells were purchased from the Institute of B
order_basis
paper_text_order:2782
id
assay:4
[4] object · 11 fields
role
analysis
definition_id
group_comparison
definition_version
f2132e96ae6c7a4e
required_operations array · 4 items
[0]
group_summary
[1]
welch_t
[2]
bootstrap_mean_difference
[3]
group_comparison_anova
support_state
supported
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
Differences between groups were evaluated by one-way analysis of variance.
order_basis
consumes_earlier_output
id
assay:5
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:35572136", "kind": "science-record", "revision": 5, "content_hash": "sha256:15c11b3b9128a05ef509616dc269eaa291e107297d7b953c90db87d679e6f9f4", "created_at": "2026-11-01T18:14:28Z", "updated_at": "2026-11-01T22:49:04Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Platelet Activating Factor Receptor Exaggerates Microglia-Mediated Microenvironment by IL10-STAT3 Signaling: A Novel Potential Biomarker and Target for Diagnosis and Treatment of Alzheimer's Disease.", "doi": "10.3389/fnagi.2022.856628", "pmid": "35572136", "authors": ["Junxiu Liu", "Linchi Jiao", "Xin Zhong", "Weifan Yao", "Ke Du", "Senxu Lu", "Yuqiang Wu", "Tianxin Ma", "Junhui Tong", "Mingyue Xu", "Wenjuan Jiang", "Yubao Wang", "Miao He", "Wei Xin", "Mingyan Liu"], "journal": "Frontiers in aging neuroscience", "year": 2022, "abstract": "Background: Early diagnosis and effective intervention are the keys to delaying the progression of Alzheimer's Disease (AD). Therefore, we aimed to identify new biomarkers for the early diagnosis of AD through bioinformatic analysis and elucidate the possible underlying mechanisms.\nMethods and Results: GSE1297, GSE63063, and GSE110226 datasets from the GEO database were used to screen the highly differentially expressed genes. We identified a potential biomarker, Platelet activating factor receptor (PTAFR), significantly upregulated in the brain tissue, peripheral blood, and cerebrospinal fluid of AD patients. Furthermore, PTAFR levels in the plasma and brain tissues of APP/PS1 mice were significantly elevated. Simultaneously, PTAFR could mediate the inflammatory responses to exaggerate the microenvironment, particularly mediated by the microglia through the IL10-STAT3 pathway. In addition, PTAFR was a putative target of anti-AD compounds, including EGCG, donepezil, curcumin, memantine, and Huperzine A.\nConclusion: PTAFR was a potential biomarker for early AD diagnosis and treatment which correlated with the microglia-mediated microenvironment. It is an important putative target for the development of a novel strategy for clinical treatment and drug discovery for AD.", "claims": [{"id": "claim-method", "statement": "Differences between groups were evaluated by one-way analysis of variance.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:35572136", "locator": "sections[15] \"Statistical Analysis\" paragraph 2", "quote": "Differences between groups were evaluated by one-way analysis of variance."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding authors.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:35572136", "locator": "sections[23] \"Data Availability Statement\" paragraph 2", "quote": "The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding authors."}], "state": "complete"}, {"id": "claim-target-result", "statement": "PTAFR was a potential biomarker for early AD diagnosis and treatment which correlated with the microglia-mediated microenvironment.", "kind": "qualitative", "target": null, "evidence": [{"asset": "source:pmid:35572136", "locator": "sections[0] \"Abstract\" paragraph 3", "quote": "PTAFR was a potential biomarker for early AD diagnosis and treatment which correlated with the microglia-mediated microenvironment."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": "PTAFR was a potential biomarker for early AD diagnosis and treatment which correlated with the microglia-mediated microenvironment.", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:35572136"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE110226"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE110226"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:35572136", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.3389/fnagi.2022.856628", "sha256": 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inquiries can be directed to the corresponding authors.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding authors.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM2982966", "GSM2982967", "GSM2982968", "GSM2982969", "GSM2982970", "GSM2982971", "GSM2982972", "GSM2982973", "GSM2982974", "GSM2982975", "GSM2982976", "GSM2982977", "GSM2982978", "GSM2982979", "GSM2982980", "GSM2982981", "GSM2982982", "GSM2982983", "GSM2982984", "GSM2982985"], "sample_count": 20, "group_sizes": null, "group_sizes_basis": null, "platform": "10379", "taxon": "Homo sapiens", "title": "Comparative Transcriptomics of Choroid Plexus in Alzheimer's Disease, Huntington's Disease and Frontotemporal Dementia: Implications for CSF Homeostasis and Dynamics", "resolution_checked_at": "2026-11-01T18:06:43Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE1297", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE1297", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE1297", "version": null, "note": "The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding authors.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding authors.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM21203", "GSM21204", "GSM21205", "GSM21206", "GSM21207", "GSM21208", "GSM21209", "GSM21210", "GSM21211", "GSM21212", "GSM21213", "GSM21214", "GSM21215", "GSM21216", "GSM21217", "GSM21218", "GSM21219", "GSM21220", "GSM21221", "GSM21222", "GSM21223", "GSM21224", "GSM21225", "GSM21226", "GSM21227", "GSM21228", "GSM21229", "GSM21230", "GSM21231", "GSM21232", "GSM21233"], "sample_count": 31, "group_sizes": null, "group_sizes_basis": null, "platform": "96", "taxon": "Homo sapiens", "title": "Incipient Alzheimer's Disease: Microarray Correlation Analyses", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}, {"id": "data:geo:GSE63063", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63063", "sha256": null, "bytes": 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Simultaneously, PTAF", "Samples and Blood Samples Collection C57BL/6 mice were obtained from the Experimental Animal Center", "ty (Shenyang, China), and APP/PS1 transgenic mice were obtained from Jackson laboratory (Maine, USA", "our experiment are BV2, SH-SY5Y, and SVGp12. Mouse-derived microglial BV2 cells and human-deriv"], "order_basis": "paper_text_order:842", "id": "assay:1"}, {"role": "data_generation", "definition_id": "western_blot", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.93, "evidence": ["l., 2016). The right hemisphere was used for Western Blotting, while the left hemisphere was immersed in p"], "order_basis": "paper_text_order:2436", "id": "assay:2"}, {"role": "data_generation", "definition_id": "ihc", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.93, "evidence": ["isphere was immersed in paraformaldehyde for immunofluorescence staining. Blood was obtained from the orbit."], "order_basis": "paper_text_order:2517", "id": "assay:3"}, {"role": "data_generation", "definition_id": "cell_culture", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["jing, China). Both BV2 and SVGp12 cells were cultured in DMEM medium (Invitrogen, Chicago, IL, United", ", IL, United States), and SH-SY5Y cells were cultured in DMEM/F12 medium (Invitrogen, Chicago, IL, Un", "re The cells used in our experiment are BV2, SH-SY5Y, and SVGp12. Mouse-derived microglial BV2 ce", "al BV2 cells and human-derived neuroblastoma SH-SY5Y cells were purchased from the Institute of B"], "order_basis": "paper_text_order:2782", "id": "assay:4"}, {"role": "analysis", "definition_id": "group_comparison", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["group_summary", "welch_t", "bootstrap_mean_difference", "group_comparison_anova"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["Differences between groups were evaluated by one-way analysis of variance."], "order_basis": "consumes_earlier_output", "id": "assay:5"}]}