Corpus Engine Towards a reproducible .science file.
← All .science files

pmid:35600359

Prognostic Value and Potential Mechanism of MTFR2 in Lung Adenocarcinoma.

Zengzhi Lian · Pei Pang · Yan Zhu · Wenwen Du · Jintao Zhou

Frontiers in oncology · 2022 doi:10.3389/fonc.2022.832517

Paper

complete

Experiment

complete

Data

partial

Analysis

partial

Execution

absent

Execution evidence has not yet been added to this .science file. Explore its methods, data and open questions to plan the next step.
Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
id
pmid:35600359
kind
science-record
content_hash
sha256:46585961ac9f38c9e0dc81103c80a0325a2cd18584225b303e1d1b8cc894ad06
schema
https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json
created_at
2026-11-01T18:14:30Z
updated_at
2026-11-01T22:06:34Z
generator object · 2 fields
name
corpus-assay-engine
run_id
reading-sci-2026-11-01
paper object · 10 fields
state
complete
title
Prognostic Value and Potential Mechanism of MTFR2 in Lung Adenocarcinoma.
doi
10.3389/fonc.2022.832517
pmid
35600359
authors array · 5 items
[0]
Zengzhi Lian
[1]
Pei Pang
[2]
Yan Zhu
[3]
Wenwen Du
[4]
Jintao Zhou
journal
Frontiers in oncology
year
2022
abstract
Mitochondrial fission regulator 2 (MTFR2) belongs to the MTFR1 family, which plays a crucial role in regulating oxidative phosphorylation. Recent studies indicate that it also participates in cancer carcinogenesis and development; however, the clinical significance of MTFR2 in lung adenocarcinoma has not been fully confirmed. Our current study investigated the relationships between clinical characteristics and MTFR2 expression based on The Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GSE31210) dataset, and clinical histopathological sample cohort. In addition, Kaplan-Meier and Cox regression analyses were additionally performed to evaluate the association between MTFR2 expression and patient survival. Gene set enrichment analysis (GESA) was conducted to spot possible pathways associated with MTFR2. Moreover, a single-sample GESA (ssGESA) was performed to evaluate the association between MTFR2 expression and immune cell infiltration. Cell colony formation assay, CCK-8 assay, cell cycle assay, and transwell assay were performed to verify the cell proliferation, migration, and invasion abilities after interfering with MTFR2 in lung cancer cells. Western blot assay was applied to identify the underlying protein levels. The results indicated that the elevated MTFR2 expression in lung adenocarcinoma samples correlated with T stage (P < 0.001), N stage (P = 0.005), M stage (P = 0.015), pathological stage (P = 0.002), and TP53 status (P < 0.001). Patients with a higher MTFR2 expression correlated with poorer overall survival (P < 0.01) and progression-free survival (P = 0.002). Knockdown of MTFR2 inhibited cell proliferation, migration, and invasion via AKT-cyclin D1 signaling and EMT pathways. Moreover, MTFR2 expression significantly positively correlated with Th2 cells (P < 0.001). Taken together, MTFR2 could serve as a novel prognostic indicator and therapeutic target for lung adenocarcinoma.
claims array · 2 items
[0] object · 6 fields
id
claim-method
statement
Univariate Cox regression analysis and the Kaplan–Meier method were applied to evaluate the prognostic factors. Then, multivariate Cox analysis was performed to compare the influence of different expression levels of MTFR2 expression with other clinical parameters.
kind
methodological
target
null
evidence array · 1 item
[0] object · 3 fields
asset
source:pmid:35600359
locator
sections[15] "Statistical Analysis" paragraph 2
quote
Univariate Cox regression analysis and the Kaplan–Meier method were applied to evaluate the prognostic factors. Then, multivariate Cox analysis was performed to compare the influence of different expression levels of MTFR2 expression with other clinical parameters.
state
complete
[1] object · 6 fields
id
claim-data-access
statement
The original contributions presented in the study are included in the article/ Supplementary Material . Further inquiries can be directed to the corresponding authors.
kind
methodological
target
null
evidence array · 1 item
[0] object · 3 fields
asset
source:pmid:35600359
locator
sections[24] "Data Availability Statement" paragraph 2
quote
The original contributions presented in the study are included in the article/ Supplementary Material . Further inquiries can be directed to the corresponding authors.
state
complete
gaps array · 0 items
experiment object · 8 fields
state
complete
steps array · 3 items
[0] object · 13 fields
id
read_published_estimate
order
1
name
Read the published estimate from the source
kind
other
state
complete
blocked_on
null
description
The claim, method and evidence span published with the source article.
parameters object · 0 fields
inputs array · 1 item
[0]
source:pmid:35600359
outputs array · 1 item
[0]
the published estimate and its evidence
instruments array · 0 items
reagents array · 0 items
[1] object · 13 fields
id
obtain_source_data
order
2
name
Obtain the source data from the named repository
kind
data-preparation
state
complete
blocked_on
null
description
The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.
parameters object · 0 fields
inputs array · 1 item
[0]
data:geo:GSE31210
outputs array · 1 item
[0]
the source data with its repository provenance
instruments array · 0 items
reagents array · 0 items
[2] object · 13 fields
id
run_analysis
order
3
name
Run the published analysis
kind
analysis
state
complete
blocked_on
null
description
Apply the paper's statistical method to the resolved series and compare the result with the published target.
parameters object · 0 fields
inputs array · 1 item
[0]
data:geo:GSE31210
outputs array · 1 item
[0]
the replicated result and its comparison
instruments array · 0 items
reagents array · 0 items
materials array · 0 items
instruments array · 0 items
reagents array · 0 items
conditions object · 0 fields
gaps array · 0 items
data object · 3 fields
state
partial
assets array · 2 items
[0] object · 15 fields
id
source:pmid:35600359
role
manuscript
format
xml
media_type
application/xml
uri
https://doi.org/10.3389/fonc.2022.832517
sha256
sha256:2d22ec3f331983a7dfdbccace6cd435ac977f813232dc63a6f35ae26f665384d
bytes
40961
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
10.3389/fonc.2022.832517
version
null
note
Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.
structure object · 4 fields
pmcid
PMC9117628
source
europe_pmc_fulltext
coverage
whole_body
text_hash_scope
rendered_section_body
[1] object · 15 fields
id
data:geo:GSE31210
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE31210
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE31210
version
null
note
The original contributions presented in the study are included in the article/ Supplementary Material . Further inquiries can be directed to the corresponding authors.
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The original contributions presented in the study are included in the article/ Supplementary Material . Further inquiries can be directed to the corresponding authors.
access_statement_kind
data_availability_statement
sample_accessions array · 246 items
[0]
GSM773540
[1]
GSM773541
[2]
GSM773542
[3]
GSM773543
[4]
GSM773544
[5]
GSM773545
[6]
GSM773546
[7]
GSM773547
[8]
GSM773548
[9]
GSM773549
[10]
GSM773550
[11]
GSM773551
[12]
GSM773552
[13]
GSM773553
[14]
GSM773554
[15]
GSM773555
[16]
GSM773556
[17]
GSM773557
[18]
GSM773558
[19]
GSM773559
[20]
GSM773560
[21]
GSM773561
[22]
GSM773562
[23]
GSM773563
[24]
GSM773564
[25]
GSM773565
[26]
GSM773566
[27]
GSM773567
[28]
GSM773568
[29]
GSM773569
[30]
GSM773570
[31]
GSM773571
[32]
GSM773572
[33]
GSM773573
[34]
GSM773574
[35]
GSM773575
[36]
GSM773576
[37]
GSM773577
[38]
GSM773578
[39]
GSM773579
[40]
GSM773580
[41]
GSM773581
[42]
GSM773582
[43]
GSM773583
[44]
GSM773584
[45]
GSM773585
[46]
GSM773586
[47]
GSM773587
[48]
GSM773588
[49]
GSM773589
[50]
GSM773590
[51]
GSM773591
[52]
GSM773592
[53]
GSM773593
[54]
GSM773594
[55]
GSM773595
[56]
GSM773596
[57]
GSM773597
[58]
GSM773598
[59]
GSM773599
[60]
GSM773600
[61]
GSM773601
[62]
GSM773602
[63]
GSM773603
[64]
GSM773604
[65]
GSM773605
[66]
GSM773606
[67]
GSM773607
[68]
GSM773608
[69]
GSM773609
[70]
GSM773610
[71]
GSM773611
[72]
GSM773612
[73]
GSM773613
[74]
GSM773614
[75]
GSM773615
[76]
GSM773616
[77]
GSM773617
[78]
GSM773618
[79]
GSM773619
[80]
GSM773620
[81]
GSM773621
[82]
GSM773622
[83]
GSM773623
[84]
GSM773624
[85]
GSM773625
[86]
GSM773626
[87]
GSM773627
[88]
GSM773628
[89]
GSM773629
[90]
GSM773630
[91]
GSM773631
[92]
GSM773632
[93]
GSM773633
[94]
GSM773634
[95]
GSM773635
[96]
GSM773636
[97]
GSM773637
[98]
GSM773638
[99]
GSM773639
[100]
GSM773640
[101]
GSM773641
[102]
GSM773642
[103]
GSM773643
[104]
GSM773644
[105]
GSM773645
[106]
GSM773646
[107]
GSM773647
[108]
GSM773648
[109]
GSM773649
[110]
GSM773650
[111]
GSM773651
[112]
GSM773652
[113]
GSM773653
[114]
GSM773654
[115]
GSM773655
[116]
GSM773656
[117]
GSM773657
[118]
GSM773658
[119]
GSM773659
[120]
GSM773660
[121]
GSM773661
[122]
GSM773662
[123]
GSM773663
[124]
GSM773664
[125]
GSM773665
[126]
GSM773666
[127]
GSM773667
[128]
GSM773668
[129]
GSM773669
[130]
GSM773670
[131]
GSM773671
[132]
GSM773672
[133]
GSM773673
[134]
GSM773674
[135]
GSM773675
[136]
GSM773676
[137]
GSM773677
[138]
GSM773678
[139]
GSM773679
[140]
GSM773680
[141]
GSM773681
[142]
GSM773682
[143]
GSM773683
[144]
GSM773684
[145]
GSM773685
[146]
GSM773686
[147]
GSM773687
[148]
GSM773688
[149]
GSM773689
[150]
GSM773690
[151]
GSM773691
[152]
GSM773692
[153]
GSM773693
[154]
GSM773694
[155]
GSM773695
[156]
GSM773696
[157]
GSM773697
[158]
GSM773698
[159]
GSM773699
[160]
GSM773700
[161]
GSM773701
[162]
GSM773702
[163]
GSM773703
[164]
GSM773704
[165]
GSM773705
[166]
GSM773706
[167]
GSM773707
[168]
GSM773708
[169]
GSM773709
[170]
GSM773710
[171]
GSM773711
[172]
GSM773712
[173]
GSM773713
[174]
GSM773714
[175]
GSM773715
[176]
GSM773716
[177]
GSM773717
[178]
GSM773718
[179]
GSM773719
[180]
GSM773720
[181]
GSM773721
[182]
GSM773722
[183]
GSM773723
[184]
GSM773724
[185]
GSM773725
[186]
GSM773726
[187]
GSM773727
[188]
GSM773728
[189]
GSM773729
[190]
GSM773730
[191]
GSM773731
[192]
GSM773732
[193]
GSM773733
[194]
GSM773734
[195]
GSM773735
[196]
GSM773736
[197]
GSM773737
[198]
GSM773738
[199]
GSM773739
[200]
GSM773740
[201]
GSM773741
[202]
GSM773742
[203]
GSM773743
[204]
GSM773744
[205]
GSM773745
[206]
GSM773746
[207]
GSM773747
[208]
GSM773748
[209]
GSM773749
[210]
GSM773750
[211]
GSM773751
[212]
GSM773752
[213]
GSM773753
[214]
GSM773754
[215]
GSM773755
[216]
GSM773756
[217]
GSM773757
[218]
GSM773758
[219]
GSM773759
[220]
GSM773760
[221]
GSM773761
[222]
GSM773762
[223]
GSM773763
[224]
GSM773764
[225]
GSM773765
[226]
GSM773766
[227]
GSM773767
[228]
GSM773768
[229]
GSM773769
[230]
GSM773770
[231]
GSM773771
[232]
GSM773772
[233]
GSM773773
[234]
GSM773774
[235]
GSM773775
[236]
GSM773776
[237]
GSM773777
[238]
GSM773778
[239]
GSM773779
[240]
GSM773780
[241]
GSM773781
[242]
GSM773782
[243]
GSM773783
[244]
GSM773784
[245]
GSM773785
sample_count
246
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Gene expression data for pathological stage I-II lung adenocarcinomas
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
gaps array · 2 items
[0]
asset:data:geo:GSE31210 not downloaded
[1]
asset:data:geo:GSE31210 licence not read
analysis object · 4 fields
state
partial
methods array · 5 items
[0] object · 10 fields
id
method-1
family
survival_analysis
specific
cox_proportional_hazards
label
Survival analysis
dsl_operations array · 1 item
[0]
cox_ph
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
time_to_event_with_censoring
evidence object · 3 fields
score
1
band
verbatim
quote
Univariate Cox regression analysis and the Kaplan–Meier method were applied to evaluate the prognostic factors. Then, multivariate Cox analysis was performed to compare the influence of different expression levels of MTFR2 expression with other clinical parameters.
[1] object · 10 fields
id
method-2
family
group_comparison
specific
wilcoxon
label
Group comparison
dsl_operations array · 0 items
missing_operations array · 1 item
[0]
group_comparison_wilcoxon
expressible
false
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
0.8
band
high
quote
Wilcoxon
[2] object · 10 fields
id
method-3
family
group_comparison
specific
anova
label
Group comparison
dsl_operations array · 4 items
[0]
group_summary
[1]
welch_t
[2]
bootstrap_mean_difference
[3]
group_comparison_anova
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
0.8
band
high
quote
ANOVA
[3] object · 10 fields
id
method-4
family
survival_analysis
specific
kaplan_meier
label
Survival analysis
dsl_operations array · 1 item
[0]
survival_km
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
time_to_event_with_censoring
evidence object · 3 fields
score
0.7
band
medium
quote
Kaplan-Meier
[4] object · 10 fields
id
method-5
family
correlation_analysis
specific
spearman
label
Correlation analysis
dsl_operations array · 1 item
[0]
spearman_rho
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
paired_numeric_columns
evidence object · 3 fields
score
0.8
band
high
quote
Spearman correlation
targets array · 0 items
gaps array · 1 item
[0]
method.reader_differs_from_extractor
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
true
required_operations array · 1 item
[0]
cox_ph
missing_operations array · 0 items
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: cox_proportional_hazards.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 1 item
[0]
GSE31210
resolved_accessions array · 1 item
[0]
GSE31210
statements array · 1 item
[0]
The original contributions presented in the study are included in the article/ Supplementary Material . Further inquiries can be directed to the corresponding authors.
basis
The paper names GSE31210 in GEO and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 1 item
[0]
cox_ph
assets array · 2 items
[0]
source:pmid:35600359
[1]
data:geo:GSE31210
steps array · 1 item
[0]
run_analysis
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE31210
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-11-01T17:46:49Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
5
usage object · 3 fields
prompt_tokens
12933
completion_tokens
1035
cached_tokens
256
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:35600359
type
paper
label
pmid:35600359
[1] object · 3 fields
id
source:pmid:35600359
type
manuscript
label
PMID 35600359 full text
[2] object · 3 fields
id
data:geo:GSE31210
type
dataset
label
GEO GSE31210
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:35600359
type
paper
label
pmid:35600359
[1] object · 3 fields
id
source:pmid:35600359
type
manuscript
label
PMID 35600359 full text
[2] object · 3 fields
id
data:geo:GSE31210
type
dataset
label
GEO GSE31210
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-35600359
type
extraction
used array · 1 item
[0]
source:pmid:35600359
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE31210
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE31210
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:35600359
parent_hash
sha256:808e1b9db856cdbf29d70a7f530e6ef0530d1ca9ca8b4487a6be16e3b0a37406
fork_of
null
gaps array · 7 items
[0]
asset:data:geo:GSE31210 licence not read
[1]
asset:data:geo:GSE31210 not downloaded
[2]
execution.not_run
[3]
method.reader_differs_from_extractor
[4]
review.human_critique
[5]
review.independent_reader
[6]
review.machine_critique
assays array · 6 items
[0] object · 11 fields
role
data_generation
definition_id
apoptosis_assay
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.93
evidence array · 1 item
[0]
l infiltration. Cell colony formation assay, CCK-8 assay, cell cycle assay, and transwell assay
order_basis
paper_text_order:1013
id
assay:1
[1] object · 11 fields
role
data_generation
definition_id
western_blot
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.93
evidence array · 1 item
[0]
interfering with MTFR2 in lung cancer cells. Western blot assay was applied to identify the underlying
order_basis
paper_text_order:1198
id
assay:2
[2] object · 11 fields
role
data_generation
definition_id
transfection
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.99
evidence array · 4 items
[0]
) and progression-free survival (P = 0.002). Knockdown of MTFR2 inhibited cell proliferation, migra
[1]
unohistochemistry staining. Cell Culture and Transfection A549 and H1299 cells were cultured in RPMI 1
[2]
Cells were seeded onto a 6-well plate before transfection. When the cell density reached 40%–50%, si-M
[3]
or negative control mixed with the jetPRIME transfection reagent (Polyplus-transfection, Ozyme, Paris
order_basis
paper_text_order:1634
id
assay:3
[3] object · 11 fields
role
data_generation
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.99
evidence array · 4 items
[0]
areas. Two pathologists independently scored immunohistochemistry staining. Cell Culture and Transfection A549
[1]
ce (P = 0.722) ( Figures 1H – M ). Moreover, immunohistochemical (IHC) assay similarly demonstrated that MTFR
[2]
res 1H – M ). Moreover, immunohistochemical (IHC) assay similarly demonstrated that MTFR2 exp
[3]
tients when compared to adjacent samples via IHC and H&E assay (×100, ×200). Supplementary Ma
order_basis
paper_text_order:3865
id
assay:4
[4] object · 11 fields
role
data_generation
definition_id
cell_culture
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.99
evidence array · 2 items
[0]
e and Transfection A549 and H1299 cells were cultured in RPMI 1640 medium supplemented with 10% FBS (
[1]
stry staining. Cell Culture and Transfection A549 and H1299 cells were cultured in RPMI 1640 m
order_basis
paper_text_order:3926
id
assay:5
[5] object · 11 fields
role
analysis
definition_id
survival_analysis
definition_version
f2132e96ae6c7a4e
required_operations array · 1 item
[0]
cox_ph
support_state
supported
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
Univariate Cox regression analysis and the Kaplan–Meier method were applied to evaluate the prognostic factors. Then, multivariate Cox analysis was performed to compare the influence of different expression levels of MTFR2 expression with other clinical parameters.
order_basis
consumes_earlier_output
id
assay:6
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:35600359", "kind": "science-record", "revision": 4, "content_hash": "sha256:46585961ac9f38c9e0dc81103c80a0325a2cd18584225b303e1d1b8cc894ad06", "created_at": "2026-11-01T18:14:30Z", "updated_at": "2026-11-01T22:06:34Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Prognostic Value and Potential Mechanism of MTFR2 in Lung Adenocarcinoma.", "doi": "10.3389/fonc.2022.832517", "pmid": "35600359", "authors": ["Zengzhi Lian", "Pei Pang", "Yan Zhu", "Wenwen Du", "Jintao Zhou"], "journal": "Frontiers in oncology", "year": 2022, "abstract": "Mitochondrial fission regulator 2 (MTFR2) belongs to the MTFR1 family, which plays a crucial role in regulating oxidative phosphorylation. Recent studies indicate that it also participates in cancer carcinogenesis and development; however, the clinical significance of MTFR2 in lung adenocarcinoma has not been fully confirmed. Our current study investigated the relationships between clinical characteristics and MTFR2 expression based on The Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GSE31210) dataset, and clinical histopathological sample cohort. In addition, Kaplan-Meier and Cox regression analyses were additionally performed to evaluate the association between MTFR2 expression and patient survival. Gene set enrichment analysis (GESA) was conducted to spot possible pathways associated with MTFR2. Moreover, a single-sample GESA (ssGESA) was performed to evaluate the association between MTFR2 expression and immune cell infiltration. Cell colony formation assay, CCK-8 assay, cell cycle assay, and transwell assay were performed to verify the cell proliferation, migration, and invasion abilities after interfering with MTFR2 in lung cancer cells. Western blot assay was applied to identify the underlying protein levels. The results indicated that the elevated MTFR2 expression in lung adenocarcinoma samples correlated with T stage (P < 0.001), N stage (P = 0.005), M stage (P = 0.015), pathological stage (P = 0.002), and TP53 status (P < 0.001). Patients with a higher MTFR2 expression correlated with poorer overall survival (P < 0.01) and progression-free survival (P = 0.002). Knockdown of MTFR2 inhibited cell proliferation, migration, and invasion via AKT-cyclin D1 signaling and EMT pathways. Moreover, MTFR2 expression significantly positively correlated with Th2 cells (P < 0.001). Taken together, MTFR2 could serve as a novel prognostic indicator and therapeutic target for lung adenocarcinoma.", "claims": [{"id": "claim-method", "statement": "Univariate Cox regression analysis and the Kaplan–Meier method were applied to evaluate the prognostic factors. Then, multivariate Cox analysis was performed to compare the influence of different expression levels of MTFR2 expression with other clinical parameters.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:35600359", "locator": "sections[15] \"Statistical Analysis\" paragraph 2", "quote": "Univariate Cox regression analysis and the Kaplan–Meier method were applied to evaluate the prognostic factors. Then, multivariate Cox analysis was performed to compare the influence of different expression levels of MTFR2 expression with other clinical parameters."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The original contributions presented in the study are included in the article/ Supplementary Material . Further inquiries can be directed to the corresponding authors.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:35600359", "locator": "sections[24] \"Data Availability Statement\" paragraph 2", "quote": "The original contributions presented in the study are included in the article/ Supplementary Material . Further inquiries can be directed to the corresponding authors."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": "", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:35600359"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE31210"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE31210"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:35600359", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.3389/fonc.2022.832517", "sha256": "sha256:2d22ec3f331983a7dfdbccace6cd435ac977f813232dc63a6f35ae26f665384d", "bytes": 40961, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.3389/fonc.2022.832517", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC9117628", "source": "europe_pmc_fulltext", "coverage": "whole_body", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:GSE31210", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE31210", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE31210", "version": null, "note": "The original contributions presented in the study are included in the article/ Supplementary Material . Further inquiries can be directed to the corresponding authors.", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "The original contributions presented in the study are included in the article/ Supplementary Material . Further inquiries can be directed to the corresponding authors.", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM773540", "GSM773541", "GSM773542", "GSM773543", "GSM773544", "GSM773545", "GSM773546", "GSM773547", "GSM773548", "GSM773549", "GSM773550", "GSM773551", "GSM773552", "GSM773553", "GSM773554", "GSM773555", "GSM773556", "GSM773557", "GSM773558", "GSM773559", "GSM773560", "GSM773561", "GSM773562", "GSM773563", "GSM773564", "GSM773565", "GSM773566", "GSM773567", "GSM773568", "GSM773569", "GSM773570", "GSM773571", "GSM773572", "GSM773573", "GSM773574", "GSM773575", "GSM773576", "GSM773577", "GSM773578", "GSM773579", "GSM773580", "GSM773581", "GSM773582", "GSM773583", "GSM773584", "GSM773585", "GSM773586", "GSM773587", "GSM773588", "GSM773589", "GSM773590", "GSM773591", "GSM773592", "GSM773593", "GSM773594", "GSM773595", "GSM773596", "GSM773597", "GSM773598", "GSM773599", "GSM773600", "GSM773601", "GSM773602", "GSM773603", "GSM773604", "GSM773605", "GSM773606", "GSM773607", "GSM773608", "GSM773609", "GSM773610", "GSM773611", "GSM773612", "GSM773613", "GSM773614", "GSM773615", "GSM773616", "GSM773617", "GSM773618", "GSM773619", "GSM773620", "GSM773621", "GSM773622", "GSM773623", "GSM773624", "GSM773625", "GSM773626", "GSM773627", "GSM773628", "GSM773629", "GSM773630", "GSM773631", "GSM773632", "GSM773633", "GSM773634", "GSM773635", "GSM773636", "GSM773637", "GSM773638", "GSM773639", "GSM773640", "GSM773641", "GSM773642", "GSM773643", "GSM773644", "GSM773645", "GSM773646", "GSM773647", "GSM773648", "GSM773649", "GSM773650", "GSM773651", "GSM773652", "GSM773653", "GSM773654", "GSM773655", "GSM773656", "GSM773657", "GSM773658", "GSM773659", "GSM773660", "GSM773661", "GSM773662", "GSM773663", "GSM773664", "GSM773665", "GSM773666", "GSM773667", "GSM773668", "GSM773669", "GSM773670", "GSM773671", "GSM773672", "GSM773673", "GSM773674", "GSM773675", "GSM773676", "GSM773677", "GSM773678", "GSM773679", "GSM773680", "GSM773681", "GSM773682", "GSM773683", "GSM773684", "GSM773685", "GSM773686", "GSM773687", "GSM773688", "GSM773689", "GSM773690", "GSM773691", "GSM773692", "GSM773693", "GSM773694", "GSM773695", "GSM773696", "GSM773697", "GSM773698", "GSM773699", "GSM773700", "GSM773701", "GSM773702", "GSM773703", "GSM773704", "GSM773705", "GSM773706", "GSM773707", "GSM773708", "GSM773709", "GSM773710", "GSM773711", "GSM773712", "GSM773713", "GSM773714", "GSM773715", "GSM773716", "GSM773717", "GSM773718", "GSM773719", "GSM773720", "GSM773721", "GSM773722", "GSM773723", "GSM773724", "GSM773725", "GSM773726", "GSM773727", "GSM773728", "GSM773729", "GSM773730", "GSM773731", "GSM773732", "GSM773733", "GSM773734", "GSM773735", "GSM773736", "GSM773737", "GSM773738", "GSM773739", "GSM773740", "GSM773741", "GSM773742", "GSM773743", "GSM773744", "GSM773745", "GSM773746", "GSM773747", "GSM773748", "GSM773749", "GSM773750", "GSM773751", "GSM773752", "GSM773753", "GSM773754", "GSM773755", "GSM773756", "GSM773757", "GSM773758", "GSM773759", "GSM773760", "GSM773761", "GSM773762", "GSM773763", "GSM773764", "GSM773765", "GSM773766", "GSM773767", "GSM773768", "GSM773769", "GSM773770", "GSM773771", "GSM773772", "GSM773773", "GSM773774", "GSM773775", "GSM773776", "GSM773777", "GSM773778", "GSM773779", "GSM773780", "GSM773781", "GSM773782", "GSM773783", "GSM773784", "GSM773785"], "sample_count": 246, "group_sizes": null, "group_sizes_basis": null, "platform": "570", "taxon": "Homo sapiens", "title": "Gene expression data for pathological stage I-II lung adenocarcinomas", "resolution_checked_at": "2026-11-01T15:39:54Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}], "gaps": ["asset:data:geo:GSE31210 not downloaded", "asset:data:geo:GSE31210 licence not read"]}, "analysis": {"state": "partial", "methods": [{"id": "method-1", "family": "survival_analysis", "specific": "cox_proportional_hazards", "label": "Survival analysis", "dsl_operations": ["cox_ph"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["time_to_event_with_censoring"], "evidence": {"score": 1.0, "band": "verbatim", "quote": "Univariate Cox regression analysis and the Kaplan–Meier method were applied to evaluate the prognostic factors. Then, multivariate Cox analysis was performed to compare the influence of different expression levels of MTFR2 expression with other clinical parameters."}}, {"id": "method-2", "family": "group_comparison", "specific": "wilcoxon", "label": "Group comparison", "dsl_operations": [], "missing_operations": ["group_comparison_wilcoxon"], "expressible": false, "parameters": {}, "data_shapes": ["two_or_more_groups_continuous"], "evidence": {"score": 0.8, "band": "high", "quote": "Wilcoxon"}}, {"id": "method-3", "family": "group_comparison", "specific": "anova", "label": "Group comparison", "dsl_operations": ["group_summary", "welch_t", "bootstrap_mean_difference", "group_comparison_anova"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["two_or_more_groups_continuous"], "evidence": {"score": 0.8, "band": "high", "quote": "ANOVA"}}, {"id": "method-4", "family": "survival_analysis", "specific": "kaplan_meier", "label": "Survival analysis", "dsl_operations": ["survival_km"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["time_to_event_with_censoring"], "evidence": {"score": 0.7, "band": "medium", "quote": "Kaplan-Meier"}}, {"id": "method-5", "family": "correlation_analysis", "specific": "spearman", "label": "Correlation analysis", "dsl_operations": ["spearman_rho"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["paired_numeric_columns"], "evidence": {"score": 0.8, "band": "high", "quote": "Spearman correlation"}}], "targets": [], "gaps": ["method.reader_differs_from_extractor"]}, "capability": {"state": "complete", "requirements": [{"capability_id": "capability:computational_analysis", "label": "Computational analysis platform", "assay_families": ["meta_analysis", "machine_learning", "survival_analysis", "statistical_regression", "pca", "molecular_docking", "network_analysis", "differential_expression", "gwas"], "availability_state": "owned", "tier_unlocked": "R1", "candidate": "Automated Assays Laravel application and simulated adapters"}], "gaps": []}, "readiness": {"state": "complete", "tier": "R1", "blocking_axis": "none", "blocked_on": "nothing:replicable_now", "axes": {"method": {"tier": "R1", "expressible": true, "required_operations": ["cox_ph"], "missing_operations": [], "basis": "The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: cox_proportional_hazards."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R1", "reachable": true, "accessions": ["GSE31210"], "resolved_accessions": ["GSE31210"], "statements": ["The original contributions presented in the study are included in the article/ Supplementary Material . Further inquiries can be directed to the corresponding authors."], "basis": "The paper names GSE31210 in GEO and the accession resolves in the repository. No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": ["cox_ph"], "assets": ["source:pmid:35600359", "data:geo:GSE31210"], "steps": ["run_analysis"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:GSE31210"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-11-01T17:46:49Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": "verbatim"}, "calls": 5, "usage": {"prompt_tokens": 12933, "completion_tokens": 1035, "cached_tokens": 256}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:35600359", "type": "paper", "label": "pmid:35600359"}, {"id": "source:pmid:35600359", "type": "manuscript", "label": "PMID 35600359 full text"}, {"id": "data:geo:GSE31210", "type": "dataset", "label": "GEO GSE31210"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:35600359", "type": "paper", "label": "pmid:35600359"}, {"id": "source:pmid:35600359", "type": "manuscript", "label": "PMID 35600359 full text"}, {"id": "data:geo:GSE31210", "type": "dataset", "label": "GEO GSE31210"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-35600359", "type": "extraction", "used": ["source:pmid:35600359"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-GSE31210", "type": "accession_resolution", "used": ["data:geo:GSE31210"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:35600359", "parent_hash": "sha256:808e1b9db856cdbf29d70a7f530e6ef0530d1ca9ca8b4487a6be16e3b0a37406", "fork_of": null, "generation": 3}, "gaps": ["asset:data:geo:GSE31210 licence not read", "asset:data:geo:GSE31210 not downloaded", "execution.not_run", "method.reader_differs_from_extractor", "review.human_critique", "review.independent_reader", "review.machine_critique"], "assays": [{"role": "data_generation", "definition_id": "apoptosis_assay", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.93, "evidence": ["l infiltration. Cell colony formation assay, CCK-8 assay, cell cycle assay, and transwell assay"], "order_basis": "paper_text_order:1013", "id": "assay:1"}, {"role": "data_generation", "definition_id": "western_blot", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.93, "evidence": ["interfering with MTFR2 in lung cancer cells. Western blot assay was applied to identify the underlying"], "order_basis": "paper_text_order:1198", "id": "assay:2"}, {"role": "data_generation", "definition_id": "transfection", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": [") and progression-free survival (P = 0.002). Knockdown of MTFR2 inhibited cell proliferation, migra", "unohistochemistry staining. Cell Culture and Transfection A549 and H1299 cells were cultured in RPMI 1", "Cells were seeded onto a 6-well plate before transfection. When the cell density reached 40%–50%, si-M", "or negative control mixed with the jetPRIME transfection reagent (Polyplus-transfection, Ozyme, Paris"], "order_basis": "paper_text_order:1634", "id": "assay:3"}, {"role": "data_generation", "definition_id": "ihc", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["areas. Two pathologists independently scored immunohistochemistry staining. Cell Culture and Transfection A549", "ce (P = 0.722) ( Figures 1H – M ). Moreover, immunohistochemical (IHC) assay similarly demonstrated that MTFR", "res 1H – M ). Moreover, immunohistochemical (IHC) assay similarly demonstrated that MTFR2 exp", "tients when compared to adjacent samples via IHC and H&E assay (×100, ×200). Supplementary Ma"], "order_basis": "paper_text_order:3865", "id": "assay:4"}, {"role": "data_generation", "definition_id": "cell_culture", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["e and Transfection A549 and H1299 cells were cultured in RPMI 1640 medium supplemented with 10% FBS (", "stry staining. Cell Culture and Transfection A549 and H1299 cells were cultured in RPMI 1640 m"], "order_basis": "paper_text_order:3926", "id": "assay:5"}, {"role": "analysis", "definition_id": "survival_analysis", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["cox_ph"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["Univariate Cox regression analysis and the Kaplan–Meier method were applied to evaluate the prognostic factors. Then, multivariate Cox analysis was performed to compare the influence of different expression levels of MTFR2 expression with other clinical parameters."], "order_basis": "consumes_earlier_output", "id": "assay:6"}]}