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pmid:35626004

The Immunological Contribution of a Novel Metabolism-Related Signature to the Prognosis and Anti-Tumor Immunity in Cervical Cancer.

Sihui Yu · Xi Li · Mingjun Ma · Rui Yang · Jiawen Zhang · Sufang Wu

Cancers · 2022 doi:10.3390/cancers14102399

Paper

complete

Experiment

complete

Data

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Analysis

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Execution

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title
The Immunological Contribution of a Novel Metabolism-Related Signature to the Prognosis and Anti-Tumor Immunity in Cervical Cancer.
doi
10.3390/cancers14102399
pmid
35626004
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[0]
Sihui Yu
[1]
Xi Li
[2]
Mingjun Ma
[3]
Rui Yang
[4]
Jiawen Zhang
[5]
Sufang Wu
journal
Cancers
year
2022
abstract
Cervical cancer is the most frequently diagnosed malignancy in the female reproductive system. Conventional stratification of patients based on clinicopathological characters has gradually been outpaced by a molecular profiling strategy. Our study aimed to identify a reliable metabolism-related predictive signature for the prognosis and anti-tumor immunity in cervical cancer. In this study, we extracted five metabolism-related hub genes, including ALOX12B, CA9, FAR2, F5 and TDO2, for the establishment of the risk score model. The Kaplan-Meier curve suggested that patients with a high-risk score apparently had a worse prognosis in the cervical cancer training cohort (TCGA, n = 304, p < 0.0001), validation cohort (GSE44001, n = 300, p = 0.0059) and pan-cancer cohorts (including nine TCGA tumors). Using a gene set enrichment analysis (GSEA), we observed that the model was correlated with various immune-regulation-related pathways. Furthermore, pan-cancer cohorts and immunohistochemical analysis showed that the infiltration of tumor infiltrating lymphocytes (TILs) was lower in the high-score group. Additionally, the model could also predict the prognosis of patients with cervical cancer based on the expression of immune checkpoints (ICPs) in both the discovery and validation cohorts. Our study established and validated a metabolism-related prognostic model, which might improve the accuracy of predicting the clinical outcome of patients with cervical cancer and provide guidance for personalized treatment.
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The association of the 211 overlapped genes with clinical outcomes of cervical cancer patients was analyzed via univariate Cox regression analysis. Those genes with a p value less than 0.05 were selected for further multivariate Cox regression analysis.
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sections[5] "2.3. Construction of the Metabolism-Related Risk Score Signature" paragraph 2
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The association of the 211 overlapped genes with clinical outcomes of cervical cancer patients was analyzed via univariate Cox regression analysis. Those genes with a p value less than 0.05 were selected for further multivariate Cox regression analysis.
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The data presented in this study are available in this article (and Supplementary Material).
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The Kaplan-Meier curve suggested that patients with a high-risk score apparently had a worse prognosis in the cervical cancer training cohort (TCGA, n = 304, p < 0.0001), validation cohort (GSE44001, n = 300, p = 0.0059) and pan-cancer cohorts (including nine TCGA tumors).
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quote
The Kaplan-Meier curve suggested that patients with a high-risk score apparently had a worse prognosis in the cervical cancer training cohort (TCGA, n = 304, p < 0.0001), validation cohort (GSE44001, n = 300, p = 0.0059) and pan-cancer cohorts (including nine TCGA tumors).
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The Kaplan-Meier curve suggested that patients with a high-risk score apparently had a worse prognosis in the cervical cancer training cohort (TCGA, n = 304, p < 0.0001), validation cohort (GSE44001, n = 300, p = 0.0059) and pan-cancer cohorts (including nine TCGA tumors).
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The association of the 211 overlapped genes with clinical outcomes of cervical cancer patients was analyzed via univariate Cox regression analysis. Those genes with a p value less than 0.05 were selected for further multivariate Cox regression analysis.
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The data presented in this study are available in this article (and Supplementary Material).
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The paper names GSE63514, GSE44001 in GEO database and the accession resolves in the repository. No dataset was downloaded and no licence was read.
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athways. Furthermore, pan-cancer cohorts and immunohistochemical analysis showed that the infiltration of tum
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The association of the 211 overlapped genes with clinical outcomes of cervical cancer patients was analyzed via univariate Cox regression analysis. Those genes with a p value less than 0.05 were selected for further multivariate Cox regression analysis.
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Complete file
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Conventional stratification of patients based on clinicopathological characters has gradually been outpaced by a molecular profiling strategy. Our study aimed to identify a reliable metabolism-related predictive signature for the prognosis and anti-tumor immunity in cervical cancer. In this study, we extracted five metabolism-related hub genes, including ALOX12B, CA9, FAR2, F5 and TDO2, for the establishment of the risk score model. The Kaplan-Meier curve suggested that patients with a high-risk score apparently had a worse prognosis in the cervical cancer training cohort (TCGA, n = 304, p < 0.0001), validation cohort (GSE44001, n = 300, p = 0.0059) and pan-cancer cohorts (including nine TCGA tumors). Using a gene set enrichment analysis (GSEA), we observed that the model was correlated with various immune-regulation-related pathways. Furthermore, pan-cancer cohorts and immunohistochemical analysis showed that the infiltration of tumor infiltrating lymphocytes (TILs) was lower in the high-score group. Additionally, the model could also predict the prognosis of patients with cervical cancer based on the expression of immune checkpoints (ICPs) in both the discovery and validation cohorts. Our study established and validated a metabolism-related prognostic model, which might improve the accuracy of predicting the clinical outcome of patients with cervical cancer and provide guidance for personalized treatment.", "claims": [{"id": "claim-method", "statement": "The association of the 211 overlapped genes with clinical outcomes of cervical cancer patients was analyzed via univariate Cox regression analysis. 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