← All .science files
pmid:35729652
Tideglusib promotes wound healing in aged skin by activating PI3K/Akt pathway.
Jiachen Sun · Hongqing Zhao · Chuan'an Shen · Shiyi Li · Wen Zhang · Jinglong Ma · Zhisheng Li · Ming Zhang · Jianqiu Yang
Stem cell research & therapy · 2022 doi:10.1186/s13287-022-02949-2
Paper
complete
Experiment
complete
Data
partial
Analysis
complete
Execution
absent
Execution evidence has not yet been added to this .science file. Explore its methods, data and open questions to plan the next step.
Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
paper object · 10 fields
authors array · 9 items
claims array · 2 items
[0] object · 6 fields
evidence array · 1 item
[0] object · 3 fields
gaps array · 0 items
experiment object · 8 fields
steps array · 3 items
[0] object · 13 fields
parameters object · 0 fields
inputs array · 1 item
outputs array · 1 item
instruments array · 0 items
reagents array · 0 items
[1] object · 13 fields
parameters object · 0 fields
inputs array · 1 item
outputs array · 1 item
instruments array · 0 items
reagents array · 0 items
[2] object · 13 fields
parameters object · 0 fields
inputs array · 1 item
outputs array · 1 item
instruments array · 0 items
reagents array · 0 items
materials array · 0 items
instruments array · 0 items
reagents array · 0 items
conditions object · 0 fields
gaps array · 0 items
data object · 3 fields
assets array · 2 items
[0] object · 15 fields
structure object · 4 fields
[1] object · 15 fields
structure object · 15 fields
sample_accessions array · 20 items
gaps array · 2 items
analysis object · 4 fields
methods array · 2 items
[0] object · 10 fields
dsl_operations array · 4 items
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[1] object · 10 fields
dsl_operations array · 0 items
missing_operations array · 1 item
parameters object · 0 fields
data_shapes array · 1 item
targets array · 0 items
gaps array · 0 items
capability object · 3 fields
requirements array · 1 item
[0] object · 6 fields
assay_families array · 9 items
gaps array · 0 items
readiness object · 8 fields
axes object · 3 fields
method object · 5 fields
required_operations array · 4 items
missing_operations array · 0 items
capability object · 4 fields
data object · 6 fields
accessions array · 1 item
resolved_accessions array · 1 item
statements array · 1 item
can_run object · 3 fields
dsl_operations array · 4 items
assets array · 2 items
steps array · 1 item
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
gaps array · 0 items
review object · 5 fields
machine_critique object · 5 fields
reader object · 5 fields
evidence_check object · 2 fields
usage object · 3 fields
stages array · 1 item
[0] object · 4 fields
gaps array · 3 items
provenance object · 7 fields
entities array · 3 items
activities array · 3 items
[0] object · 4 fields
used array · 3 items
[0] object · 3 fields
[1] object · 3 fields
[2] object · 3 fields
[1] object · 4 fields
agents array · 2 items
lineage object · 4 fields
gaps array · 6 items
assays array · 8 items
[0] object · 11 fields
required_operations array · 0 items
source_hashes object · 1 field
evidence array · 1 item
[1] object · 11 fields
required_operations array · 0 items
source_hashes object · 1 field
evidence array · 4 items
[2] object · 11 fields
required_operations array · 0 items
source_hashes object · 1 field
evidence array · 3 items
[3] object · 11 fields
required_operations array · 0 items
source_hashes object · 1 field
evidence array · 2 items
[4] object · 11 fields
required_operations array · 0 items
source_hashes object · 1 field
evidence array · 1 item
[5] object · 11 fields
required_operations array · 0 items
source_hashes object · 1 field
evidence array · 4 items
[6] object · 11 fields
required_operations array · 0 items
source_hashes object · 1 field
evidence array · 2 items
[7] object · 11 fields
required_operations array · 4 items
source_hashes object · 1 field
evidence array · 1 item
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:35729652", "kind": "science-record", "revision": 5, "content_hash": "sha256:70c02bbd31d9ef574b4512139f8e755d289cc2b0552dee5db8203af7776232bb", "created_at": "2026-11-01T18:14:45Z", "updated_at": "2026-11-01T22:49:22Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Tideglusib promotes wound healing in aged skin by activating PI3K/Akt pathway.", "doi": "10.1186/s13287-022-02949-2", "pmid": "35729652", "authors": ["Jiachen Sun", "Hongqing Zhao", "Chuan'an Shen", "Shiyi Li", "Wen Zhang", "Jinglong Ma", "Zhisheng Li", "Ming Zhang", "Jianqiu Yang"], "journal": "Stem cell research & therapy", "year": 2022, "abstract": "BACKGROUND: Aging disturbs the skin morphology and function, manifested as thinned epithelium and impaired wound healing. As a major type of skin cells, epidermal stem cells (EpiSCs) are inevitably affected by aging. The effect of age on EpiSCs and wound healing needs to be further explored.\nMETHODS: Skin RNA-seq data of young (5 months) and old (30 months) CB6F1 mice were obtained from GEO Series GSE35322 with 10 in each age group. Differentially expressed genes were analyzed, and EpiSCs-related pathways were enriched by KEGG. The age-related changes of the screened PI3K/Akt pathway were validated by Western Blot and immunofluorescence of epidermis of SD rats (2, 17, and 23 months, n = 6). The expression of upstream protein EGFR was assessed by immunofluorescence in skin of mice (4, 13, and 23 months, n = 6) and human (respectively, 23, 28, 30 years old in the young group and 69, 73, 78 years old in the old group) skin. Inhibitors of EGFR were used to verify its effects on EpiSCs and wound healing. The small molecule drug Tideglusib was tested for its effects on signaling pathways of EpiSCs and wound healing of aged rats. Western Blot was used for the detection of signaling pathways in in vitro experiments. Cell migration assays were used to assess cell migration ability. Flow cytometry was used to detect changes in cell cycle and apoptosis levels. Sulforhodamine B assay and CCK-8 assay were used to evaluate cell proliferation and viability, respectively. Student's t test and one-way analysis of variance (ANOVA) followed by the multiple comparisons Bonferroni test were used for statistical analysis. The 0.05 level of confidence was accepted as a significant difference.\nRESULTS: EpiSCs-related PI3K/Akt pathway was enriched by KEGG and verified by decreased phosphorylation of Akt (32.1 ± 13.8%, P < 0.01) and mTOR (38.9 ± 11.8%, P < 0.01) in aged epidermis of rats. Furthermore, the expression of PI3K/Akt-upstream EGFR decreased with age in the epidermis of mouse (27.6 ± 5.5%, P < 0.01) and human (25.8 ± 9.3%, P < 0.01). With EGFR blocked by Erlotinib, EpiSCs showed reduced phosphorylation of Akt (30.4 ± 10.6%, P < 0.01) and mTOR (39.8 ± 12.8%, P < 0.01), impaired proliferation and migration after incubated for 24 h and 36 h (P < 0.05), and higher levels of apoptosis (11.9 ± 1.7%, P < 0.05), and rats showed slower wound healing from d7 to d14 after wounding (P < 0.01). In addition to slower wound healing rates, aged rats also showed a decrease in the efficacy of EGF, partly due to the downregulated EGFR expression. By activating PI3K/Akt pathway, Tideglusib promoted the proliferation and migration of EpiSCs with apoptosis inhibited (P < 0.01) and accelerated wound healing in aged rats from d7 to d14 after wounding (P < 0.05). Notably, the combined use of Tideglusib and EGF could further enhance wound healing in aged rats.\nCONCLUSIONS: The decreased expression of EGFR in epidermis with age resulted in decreased activity of the PI3K/Akt pathway and limited EGF efficacy. Tideglusib could assist wound healing in aged rats via activating PI3K/Akt pathway, which may be considered as an ingredient for medical and cosmetics use.", "claims": [{"id": "claim-method", "statement": "The statistical analysis was performed by two-tailed unpaired Student’s t test, one-way analysis of variance (ANOVA) followed by the multiple comparisons Bonferroni test and presented as the mean ± SD using the Prism software (GraphPad).", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:35729652", "locator": "sections[14] \"Quantification and statistical analysis\" paragraph 2", "quote": "The statistical analysis was performed by two-tailed unpaired Student’s t test, one-way analysis of variance (ANOVA) followed by the multiple comparisons Bonferroni test and presented as the mean ± SD using the Prism software (GraphPad)."}], "state": "complete"}, {"id": "claim-data-access", "statement": "Further information and requests for reagents may be directed to and will be fulfilled by the Lead Contact: Chuan’an Shen (shenchuanan@126.com).", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:35729652", "locator": "sections[29] \"notes\" paragraph 1", "quote": "Further information and requests for reagents may be directed to and will be fulfilled by the Lead Contact: Chuan’an Shen (shenchuanan@126.com)."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": "", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:35729652"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE35322"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE35322"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:35729652", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1186/s13287-022-02949-2", "sha256": "sha256:9872f283f3adca15257ffbfacec6c23048f2b2b8f980b0c53aa2a2831a478b50", "bytes": 52549, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.1186/s13287-022-02949-2", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC9210790", "source": "europe_pmc_fulltext", "coverage": "whole_body_without_references", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:GSE35322", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35322", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE35322", "version": null, "note": "Further information and requests for reagents may be directed to and will be fulfilled by the Lead Contact: Chuan’an Shen (shenchuanan@126.com).", "structure": {"repository": "GEO", "access_route": "GEO accession URL", "access_statement_verbatim": "Further information and requests for reagents may be directed to and will be fulfilled by the Lead Contact: Chuan’an Shen (shenchuanan@126.com).", "access_statement_kind": "data_availability_statement", "sample_accessions": ["GSM865929", "GSM865930", "GSM865931", "GSM865932", "GSM865933", "GSM865934", "GSM865935", "GSM865936", "GSM865937", "GSM865938", "GSM865939", "GSM865940", "GSM865941", "GSM865942", "GSM865943", "GSM865944", "GSM865945", "GSM865946", "GSM865947", "GSM865948"], "sample_count": 20, "group_sizes": null, "group_sizes_basis": null, "platform": "1261", "taxon": "Mus musculus", "title": "Expression data from tail skin in young (5 months) and old (30 months) CB6F1 mice", "resolution_checked_at": "2026-11-01T18:06:43Z", "resolution_check": "identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}], "gaps": ["asset:data:geo:GSE35322 not downloaded", "asset:data:geo:GSE35322 licence not read"]}, "analysis": {"state": "complete", "methods": [{"id": "method-1", "family": "group_comparison", "specific": "anova", "label": "Group comparison", "dsl_operations": ["group_summary", "welch_t", "bootstrap_mean_difference", "group_comparison_anova"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["two_or_more_groups_continuous"], "evidence": {"score": 1.0, "band": "verbatim", "quote": "The statistical analysis was performed by two-tailed unpaired Student’s t test, one-way analysis of variance (ANOVA) followed by the multiple comparisons Bonferroni test and presented as the mean ± SD using the Prism software (GraphPad)."}}, {"id": "method-2", "family": "group_comparison", "specific": "student_t_test", "label": "Group comparison", "dsl_operations": [], "missing_operations": ["student_t"], "expressible": false, "parameters": {}, "data_shapes": ["two_or_more_groups_continuous"], "evidence": {"score": 0.7, "band": "medium", "quote": "Student's t test"}}], "targets": [], "gaps": []}, "capability": {"state": "complete", "requirements": [{"capability_id": "capability:computational_analysis", "label": "Computational analysis platform", "assay_families": ["meta_analysis", "machine_learning", "survival_analysis", "statistical_regression", "pca", "molecular_docking", "network_analysis", "differential_expression", "gwas"], "availability_state": "owned", "tier_unlocked": "R1", "candidate": "Automated Assays Laravel application and simulated adapters"}], "gaps": []}, "readiness": {"state": "complete", "tier": "R1", "blocking_axis": "none", "blocked_on": "nothing:replicable_now", "axes": {"method": {"tier": "R1", "expressible": true, "required_operations": ["group_summary", "welch_t", "bootstrap_mean_difference", "group_comparison_anova"], "missing_operations": [], "basis": "The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: anova."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R1", "reachable": true, "accessions": ["GSE35322"], "resolved_accessions": ["GSE35322"], "statements": ["Further information and requests for reagents may be directed to and will be fulfilled by the Lead Contact: Chuan’an Shen (shenchuanan@126.com)."], "basis": "The paper names GSE35322 in GEO and the accession resolves in the repository. No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": ["group_summary", "welch_t", "bootstrap_mean_difference", "group_comparison_anova"], "assets": ["source:pmid:35729652", "data:geo:GSE35322"], "steps": ["run_analysis"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:GSE35322"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-11-01T17:51:44Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": "verbatim"}, "calls": 5, "usage": {"prompt_tokens": 15066, "completion_tokens": 751, "cached_tokens": 264}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:35729652", "type": "paper", "label": "pmid:35729652"}, {"id": "source:pmid:35729652", "type": "manuscript", "label": "PMID 35729652 full text"}, {"id": "data:geo:GSE35322", "type": "dataset", "label": "GEO GSE35322"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:35729652", "type": "paper", "label": "pmid:35729652"}, {"id": "source:pmid:35729652", "type": "manuscript", "label": "PMID 35729652 full text"}, {"id": "data:geo:GSE35322", "type": "dataset", "label": "GEO GSE35322"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-35729652", "type": "extraction", "used": ["source:pmid:35729652"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-GSE35322", "type": "accession_resolution", "used": ["data:geo:GSE35322"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:35729652", "parent_hash": "sha256:caf709b1a1bece41c44c2c4c68919088fa17f94e3374ad2fb6220407337f2632", "fork_of": null, "generation": 4}, "gaps": ["asset:data:geo:GSE35322 licence not read", "asset:data:geo:GSE35322 not downloaded", "execution.not_run", "review.human_critique", "review.independent_reader", "review.machine_critique"], "assays": [{"role": "data_generation", "definition_id": "rna_seq", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.93, "evidence": ["needs to be further explored. METHODS: Skin RNA-seq data of young (5 months) and old (30 months)"], "order_basis": "paper_text_order:342", "id": "assay:1"}, {"role": "data_generation", "definition_id": "animal_model", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["f young (5 months) and old (30 months) CB6F1 mice were obtained from GEO Series GSE35322 with 10 in", "EGFR decreased with age in the epidermis of mouse (27.6 ± 5.5%, P < 0.01) and human (25.8 ± 9.", "ot and immunofluorescence of epidermis of SD rats (2, 17, and 23 months, n = 6). The expressio", "pathways of EpiSCs and wound healing of aged rats. Western Blot was used for the detection of"], "order_basis": "paper_text_order:400", "id": "assay:2"}, {"role": "data_generation", "definition_id": "western_blot", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["screened PI3K/Akt pathway were validated by Western Blot and immunofluorescence of epidermis of SD ra", "ys of EpiSCs and wound healing of aged rats. Western Blot was used for the detection of signaling path", "es of rats of different ages were exposed to Western Blot for detection of the PI3K/Akt pathway. After"], "order_basis": "paper_text_order:644", "id": "assay:3"}, {"role": "data_generation", "definition_id": "ihc", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["t pathway were validated by Western Blot and immunofluorescence of epidermis of SD rats (2, 17, and 23 month", "ion of upstream protein EGFR was assessed by immunofluorescence in skin of mice (4, 13, and 23 months, n = 6"], "order_basis": "paper_text_order:660", "id": "assay:4"}, {"role": "data_generation", "definition_id": "flow_cytometry", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.93, "evidence": ["were used to assess cell migration ability. Flow cytometry was used to detect changes in cell cycle and"], "order_basis": "paper_text_order:1329", "id": "assay:5"}, {"role": "data_generation", "definition_id": "apoptosis_assay", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["was used to detect changes in cell cycle and apoptosis levels. Sulforhodamine B assay and CCK-8 ass", "h and 36 h (P < 0.05), and higher levels of apoptosis (11.9 ± 1.7%, P < 0.05), and rats showed slo", "e proliferation and migration of EpiSCs with apoptosis inhibited (P < 0.01) and accelerated wound h", "apoptosis levels. Sulforhodamine B assay and CCK-8 assay were used to evaluate cell proliferati"], "order_basis": "paper_text_order:1388", "id": "assay:6"}, {"role": "data_generation", "definition_id": "cell_culture", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["the experiments. For experiments, cells were cultured in Epilife culture medium with or without Erlot", "d [10]. Independent clones were cultured and passaged in Epilife culture medium (MEPI500CA, Gibco)"], "order_basis": "paper_text_order:5778", "id": "assay:7"}, {"role": "analysis", "definition_id": "group_comparison", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["group_summary", "welch_t", "bootstrap_mean_difference", "group_comparison_anova"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["The statistical analysis was performed by two-tailed unpaired Student’s t test, one-way analysis of variance (ANOVA) followed by the multiple comparisons Bonferroni test and presented as the mean ± SD using the Prism software (GraphPad)."], "order_basis": "consumes_earlier_output", "id": "assay:8"}]}