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pmid:35812369

IGFBP7 and the Tumor Immune Landscape: A Novel Target for Immunotherapy in Bladder Cancer.

Xianyanling Yi · Xiaonan Zheng · Hang Xu · Jin Li · Tianyi Zhang · Peng Ge · Dazhou Liao · Hong Li · Xiaoyan Lyu · Jianzhong Ai

Frontiers in immunology · 2022 doi:10.3389/fimmu.2022.898493

Paper

complete

Experiment

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Data

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Analysis

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pmid:35812369
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title
IGFBP7 and the Tumor Immune Landscape: A Novel Target for Immunotherapy in Bladder Cancer.
doi
10.3389/fimmu.2022.898493
pmid
35812369
authors array · 10 items
[0]
Xianyanling Yi
[1]
Xiaonan Zheng
[2]
Hang Xu
[3]
Jin Li
[4]
Tianyi Zhang
[5]
Peng Ge
[6]
Dazhou Liao
[7]
Hong Li
[8]
Xiaoyan Lyu
[9]
Jianzhong Ai
journal
Frontiers in immunology
year
2022
abstract
Insulin-like growth factor binding protein-7 (IGFBP7) was recently reported to be a ligand of CD93, a potential target to normalize vasculature and attenuate immunotherapy. However, its role in the tumor microenvironment (TME) and immunotherapy response of bladder cancer (BLCA) remains unclear. We comprehensively evaluated the correlation between IGFBP7 and multiple immunological characteristics of BLCA across The Cancer Genome Atlas (TCGA) and two external cohorts. Importantly, the response of IGFBP7-grouped BLCA patients to immunotherapy was predicted and validated by five real-word immunotherapy cohorts. Finally, we developed an IGFBP7-based immune risk model validated by five independent cohorts. IGFBP7 modulated the TME across pan-caners. In BLCA, high expression of IGFBP7 was correlated with more aggressive clinical features. IGFBP7 was positively associated with immunomodulators and promoted tumor-infiltrating lymphocyte trafficking into the tumor microenvironment. However, T cells recognition and tumor cell killing were lower in the high-IGFBP7 group. In addition, high expression of IGFBP7 displayed lower enrichment scores for most pro-immunotherapy pathways. Clinical data from IMvigor210 and GSE176307 indicated that IGFBP7 negatively correlated with the BLCA immunotherapy response. The same trend was also observed in a renal cell carcinoma (RCC) cohort and two melanoma cohorts. Notably, urothelial and luminal differentiation were less frequently observed in the high-IGFBP7 group, while neuroendocrine differentiation was more frequently observed. Mechanistically, high IGFBP7 was associated with an enriched hypoxia pathway and higher expression of key genes in ERBB therapy and antiangiogenic therapy. Furthermore, our IGFBP7-based immune risk model was able to predict the prognosis and response to immunotherapy with good accuracy (5-year AUC = 0.734). Overall, IGFBP7 plays a critical role in the immunoregulation and TME of BLCA and may serve as a novel potential target for combination treatment with immunotherapy for BLCA.
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Coexpression was analyzed statistically by using the Spearman correlation coefficient to identify the expression differences of 122 immunostimulators between the high- and low-IGFBP7 groups
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sections[6] "The Effect of IGBP7 on Immunological Characteristics in BLCA" paragraph 2
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Coexpression was analyzed statistically by using the Spearman correlation coefficient to identify the expression differences of 122 immunostimulators between the high- and low-IGFBP7 groups
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The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material .
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Overall, IGFBP7 plays a critical role in the immunoregulation and TME of BLCA and may serve as a novel potential target for combination treatment with immunotherapy for BLCA.
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Overall, IGFBP7 plays a critical role in the immunoregulation and TME of BLCA and may serve as a novel potential target for combination treatment with immunotherapy for BLCA.
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title
Predective Value of Prognosis-Related Gene Expression Study in Primary Bladder Cancer
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GSM786552
[62]
GSM786553
[63]
GSM786554
[64]
GSM786555
[65]
GSM786556
[66]
GSM786557
[67]
GSM786558
[68]
GSM786559
[69]
GSM786560
[70]
GSM786561
[71]
GSM786562
[72]
GSM786563
[73]
GSM786564
[74]
GSM786565
[75]
GSM786566
[76]
GSM786567
[77]
GSM786568
[78]
GSM786569
[79]
GSM786570
[80]
GSM786571
[81]
GSM786572
[82]
GSM786573
[83]
GSM786574
[84]
GSM786575
[85]
GSM786576
[86]
GSM786577
[87]
GSM786578
[88]
GSM786579
[89]
GSM786580
[90]
GSM786581
[91]
GSM786582
[92]
GSM786583
sample_count
93
group_sizes
null
group_sizes_basis
null
platform
570
taxon
Homo sapiens
title
Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer  
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[4] object · 15 fields
id
data:geo:GSE32894
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE32894
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE32894
version
null
note
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material .
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material .
access_statement_kind
data_availability_statement
sample_accessions array · 308 items
[0]
GSM814052
[1]
GSM814053
[2]
GSM814054
[3]
GSM814055
[4]
GSM814056
[5]
GSM814057
[6]
GSM814058
[7]
GSM814059
[8]
GSM814060
[9]
GSM814061
[10]
GSM814062
[11]
GSM814063
[12]
GSM814064
[13]
GSM814065
[14]
GSM814066
[15]
GSM814067
[16]
GSM814068
[17]
GSM814069
[18]
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[19]
GSM814071
[20]
GSM814072
[21]
GSM814073
[22]
GSM814074
[23]
GSM814075
[24]
GSM814076
[25]
GSM814077
[26]
GSM814078
[27]
GSM814079
[28]
GSM814080
[29]
GSM814081
[30]
GSM814082
[31]
GSM814083
[32]
GSM814084
[33]
GSM814085
[34]
GSM814086
[35]
GSM814087
[36]
GSM814088
[37]
GSM814089
[38]
GSM814090
[39]
GSM814091
[40]
GSM814092
[41]
GSM814093
[42]
GSM814094
[43]
GSM814095
[44]
GSM814096
[45]
GSM814097
[46]
GSM814098
[47]
GSM814099
[48]
GSM814100
[49]
GSM814101
[50]
GSM814102
[51]
GSM814103
[52]
GSM814104
[53]
GSM814105
[54]
GSM814106
[55]
GSM814107
[56]
GSM814108
[57]
GSM814109
[58]
GSM814110
[59]
GSM814111
[60]
GSM814112
[61]
GSM814113
[62]
GSM814114
[63]
GSM814115
[64]
GSM814116
[65]
GSM814117
[66]
GSM814118
[67]
GSM814119
[68]
GSM814120
[69]
GSM814121
[70]
GSM814122
[71]
GSM814123
[72]
GSM814124
[73]
GSM814125
[74]
GSM814126
[75]
GSM814127
[76]
GSM814128
[77]
GSM814129
[78]
GSM814130
[79]
GSM814131
[80]
GSM814132
[81]
GSM814133
[82]
GSM814134
[83]
GSM814135
[84]
GSM814136
[85]
GSM814137
[86]
GSM814138
[87]
GSM814139
[88]
GSM814140
[89]
GSM814141
[90]
GSM814142
[91]
GSM814143
[92]
GSM814144
[93]
GSM814145
[94]
GSM814146
[95]
GSM814147
[96]
GSM814148
[97]
GSM814149
[98]
GSM814150
[99]
GSM814151
[100]
GSM814152
[101]
GSM814153
[102]
GSM814154
[103]
GSM814155
[104]
GSM814156
[105]
GSM814157
[106]
GSM814158
[107]
GSM814159
[108]
GSM814160
[109]
GSM814161
[110]
GSM814162
[111]
GSM814163
[112]
GSM814164
[113]
GSM814165
[114]
GSM814166
[115]
GSM814167
[116]
GSM814168
[117]
GSM814169
[118]
GSM814170
[119]
GSM814171
[120]
GSM814172
[121]
GSM814173
[122]
GSM814174
[123]
GSM814175
[124]
GSM814176
[125]
GSM814177
[126]
GSM814178
[127]
GSM814179
[128]
GSM814180
[129]
GSM814181
[130]
GSM814182
[131]
GSM814183
[132]
GSM814184
[133]
GSM814185
[134]
GSM814186
[135]
GSM814187
[136]
GSM814188
[137]
GSM814189
[138]
GSM814190
[139]
GSM814191
[140]
GSM814192
[141]
GSM814193
[142]
GSM814194
[143]
GSM814195
[144]
GSM814196
[145]
GSM814197
[146]
GSM814198
[147]
GSM814199
[148]
GSM814200
[149]
GSM814201
[150]
GSM814202
[151]
GSM814203
[152]
GSM814204
[153]
GSM814205
[154]
GSM814206
[155]
GSM814207
[156]
GSM814208
[157]
GSM814209
[158]
GSM814210
[159]
GSM814211
[160]
GSM814212
[161]
GSM814213
[162]
GSM814214
[163]
GSM814215
[164]
GSM814216
[165]
GSM814217
[166]
GSM814218
[167]
GSM814219
[168]
GSM814220
[169]
GSM814221
[170]
GSM814222
[171]
GSM814223
[172]
GSM814224
[173]
GSM814225
[174]
GSM814226
[175]
GSM814227
[176]
GSM814228
[177]
GSM814229
[178]
GSM814230
[179]
GSM814231
[180]
GSM814232
[181]
GSM814233
[182]
GSM814234
[183]
GSM814235
[184]
GSM814236
[185]
GSM814237
[186]
GSM814238
[187]
GSM814239
[188]
GSM814240
[189]
GSM814241
[190]
GSM814242
[191]
GSM814243
[192]
GSM814244
[193]
GSM814245
[194]
GSM814246
[195]
GSM814247
[196]
GSM814248
[197]
GSM814249
[198]
GSM814250
[199]
GSM814251
[200]
GSM814252
[201]
GSM814253
[202]
GSM814254
[203]
GSM814255
[204]
GSM814256
[205]
GSM814257
[206]
GSM814258
[207]
GSM814259
[208]
GSM814260
[209]
GSM814261
[210]
GSM814262
[211]
GSM814263
[212]
GSM814264
[213]
GSM814265
[214]
GSM814266
[215]
GSM814267
[216]
GSM814268
[217]
GSM814269
[218]
GSM814270
[219]
GSM814271
[220]
GSM814272
[221]
GSM814273
[222]
GSM814274
[223]
GSM814275
[224]
GSM814276
[225]
GSM814277
[226]
GSM814278
[227]
GSM814279
[228]
GSM814280
[229]
GSM814281
[230]
GSM814282
[231]
GSM814283
[232]
GSM814284
[233]
GSM814285
[234]
GSM814286
[235]
GSM814287
[236]
GSM814288
[237]
GSM814289
[238]
GSM814290
[239]
GSM814291
[240]
GSM814292
[241]
GSM814293
[242]
GSM814294
[243]
GSM814295
[244]
GSM814296
[245]
GSM814297
[246]
GSM814298
[247]
GSM814299
[248]
GSM814300
[249]
GSM814301
[250]
GSM814302
[251]
GSM814303
[252]
GSM814304
[253]
GSM814305
[254]
GSM814306
[255]
GSM814307
[256]
GSM814308
[257]
GSM814309
[258]
GSM814310
[259]
GSM814311
[260]
GSM814312
[261]
GSM814313
[262]
GSM814314
[263]
GSM814315
[264]
GSM814316
[265]
GSM814317
[266]
GSM814318
[267]
GSM814319
[268]
GSM814320
[269]
GSM814321
[270]
GSM814322
[271]
GSM814323
[272]
GSM814324
[273]
GSM814325
[274]
GSM814326
[275]
GSM814327
[276]
GSM814328
[277]
GSM814329
[278]
GSM814330
[279]
GSM814331
[280]
GSM814332
[281]
GSM814333
[282]
GSM814334
[283]
GSM814335
[284]
GSM814336
[285]
GSM814337
[286]
GSM814338
[287]
GSM814339
[288]
GSM814340
[289]
GSM814341
[290]
GSM814342
[291]
GSM814343
[292]
GSM814344
[293]
GSM814345
[294]
GSM814346
[295]
GSM814347
[296]
GSM814348
[297]
GSM814349
[298]
GSM814350
[299]
GSM814351
[300]
GSM814352
[301]
GSM814353
[302]
GSM814354
[303]
GSM814355
[304]
GSM814356
[305]
GSM814357
[306]
GSM814358
[307]
GSM814359
sample_count
308
group_sizes
null
group_sizes_basis
null
platform
6947
taxon
Homo sapiens
title
A Molecular Taxonomy of Urothelial Carcinoma
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[5] object · 15 fields
id
data:geo:GSE48277
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48277
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE48277
version
null
note
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material .
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material .
access_statement_kind
data_availability_statement
sample_accessions array · 349 items
[0]
GSM1164253
[1]
GSM1164254
[2]
GSM1164255
[3]
GSM1164256
[4]
GSM1164257
[5]
GSM1164258
[6]
GSM1164259
[7]
GSM1164260
[8]
GSM1164261
[9]
GSM1164262
[10]
GSM1164263
[11]
GSM1164264
[12]
GSM1164265
[13]
GSM1164266
[14]
GSM1164267
[15]
GSM1164268
[16]
GSM1164269
[17]
GSM1164270
[18]
GSM1164271
[19]
GSM1164272
[20]
GSM1164273
[21]
GSM1164274
[22]
GSM1164275
[23]
GSM1164276
[24]
GSM1164277
[25]
GSM1164278
[26]
GSM1164279
[27]
GSM1164280
[28]
GSM1164281
[29]
GSM1164282
[30]
GSM1167333
[31]
GSM1167334
[32]
GSM1167335
[33]
GSM1167336
[34]
GSM1167337
[35]
GSM1167338
[36]
GSM1167339
[37]
GSM1167340
[38]
GSM1167341
[39]
GSM1167342
[40]
GSM1167343
[41]
GSM1167344
[42]
GSM1167345
[43]
GSM1167346
[44]
GSM1167347
[45]
GSM1167348
[46]
GSM1167349
[47]
GSM1167350
[48]
GSM1167351
[49]
GSM1167352
[50]
GSM1167353
[51]
GSM1167354
[52]
GSM1167355
[53]
GSM1167356
[54]
GSM1167357
[55]
GSM1167358
[56]
GSM1167359
[57]
GSM1167360
[58]
GSM1167361
[59]
GSM1167362
[60]
GSM1167363
[61]
GSM1167364
[62]
GSM1167365
[63]
GSM1167366
[64]
GSM1167367
[65]
GSM1167368
[66]
GSM1167369
[67]
GSM1167370
[68]
GSM1167371
[69]
GSM1167372
[70]
GSM1167373
[71]
GSM1167374
[72]
GSM1167375
[73]
GSM1167376
[74]
GSM1167377
[75]
GSM1167378
[76]
GSM1167379
[77]
GSM1167380
[78]
GSM1167381
[79]
GSM1167382
[80]
GSM1167383
[81]
GSM1167384
[82]
GSM1167385
[83]
GSM1167386
[84]
GSM1167387
[85]
GSM1167388
[86]
GSM1167389
[87]
GSM1167390
[88]
GSM1167391
[89]
GSM1167392
[90]
GSM1167393
[91]
GSM1167394
[92]
GSM1167395
[93]
GSM1167396
[94]
GSM1167397
[95]
GSM1167398
[96]
GSM1167399
[97]
GSM1167400
[98]
GSM1167401
[99]
GSM1167402
[100]
GSM1167403
[101]
GSM1167404
[102]
GSM1167405
[103]
GSM1167406
[104]
GSM1167407
[105]
GSM1167408
[106]
GSM1167409
[107]
GSM1167410
[108]
GSM1167411
[109]
GSM1167412
[110]
GSM1167413
[111]
GSM1167414
[112]
GSM1167415
[113]
GSM1167416
[114]
GSM1167417
[115]
GSM1167418
[116]
GSM1167419
[117]
GSM1167420
[118]
GSM1167421
[119]
GSM1167422
[120]
GSM1167423
[121]
GSM1167424
[122]
GSM1167425
[123]
GSM1167426
[124]
GSM1167427
[125]
GSM1167428
[126]
GSM1167429
[127]
GSM1167430
[128]
GSM1167431
[129]
GSM1167432
[130]
GSM1167433
[131]
GSM1167434
[132]
GSM1167435
[133]
GSM1167436
[134]
GSM1167437
[135]
GSM1167438
[136]
GSM1167439
[137]
GSM1167440
[138]
GSM1167441
[139]
GSM1167442
[140]
GSM1167443
[141]
GSM1167444
[142]
GSM1167445
[143]
GSM1167446
[144]
GSM1167447
[145]
GSM1167448
[146]
GSM1167449
[147]
GSM1167450
[148]
GSM1167451
[149]
GSM1167452
[150]
GSM1167453
[151]
GSM1167454
[152]
GSM1167455
[153]
GSM1167456
[154]
GSM1167457
[155]
GSM1167458
[156]
GSM1167459
[157]
GSM1167460
[158]
GSM1167461
[159]
GSM1167462
[160]
GSM1167463
[161]
GSM1167464
[162]
GSM1167465
[163]
GSM1167466
[164]
GSM1167467
[165]
GSM1167468
[166]
GSM1167469
[167]
GSM1167470
[168]
GSM1167471
[169]
GSM1167472
[170]
GSM1167473
[171]
GSM1167474
[172]
GSM1169026
[173]
GSM1169027
[174]
GSM1169028
[175]
GSM1169029
[176]
GSM1169030
[177]
GSM1169031
[178]
GSM1169032
[179]
GSM1169033
[180]
GSM1169034
[181]
GSM1169035
[182]
GSM1169036
[183]
GSM1169037
[184]
GSM1169038
[185]
GSM1169039
[186]
GSM1169040
[187]
GSM1169041
[188]
GSM1169042
[189]
GSM1169043
[190]
GSM1173901
[191]
GSM1173902
[192]
GSM1173903
[193]
GSM1173904
[194]
GSM1173905
[195]
GSM1173906
[196]
GSM1173907
[197]
GSM1173908
[198]
GSM1173909
[199]
GSM1173910
[200]
GSM1173911
[201]
GSM1173912
[202]
GSM1173913
[203]
GSM1173914
[204]
GSM1173915
[205]
GSM1173916
[206]
GSM1173917
[207]
GSM1173918
[208]
GSM1173919
[209]
GSM1173920
[210]
GSM1173921
[211]
GSM1173922
[212]
GSM1173923
[213]
GSM1173924
[214]
GSM1173925
[215]
GSM1173926
[216]
GSM1173927
[217]
GSM1173928
[218]
GSM1173929
[219]
GSM1173930
[220]
GSM1173931
[221]
GSM1173932
[222]
GSM1173933
[223]
GSM1173934
[224]
GSM1173935
[225]
GSM1173936
[226]
GSM1173937
[227]
GSM1173938
[228]
GSM1173939
[229]
GSM1173940
[230]
GSM1173941
[231]
GSM1173942
[232]
GSM1173943
[233]
GSM1173944
[234]
GSM1173945
[235]
GSM1173946
[236]
GSM1173947
[237]
GSM1173948
[238]
GSM1173949
[239]
GSM1173950
[240]
GSM1173951
[241]
GSM1173952
[242]
GSM1173953
[243]
GSM1173954
[244]
GSM1173955
[245]
GSM1173956
[246]
GSM1173957
[247]
GSM1173968
[248]
GSM1173969
[249]
GSM1173970
[250]
GSM1173971
[251]
GSM1173972
[252]
GSM1173973
[253]
GSM1173974
[254]
GSM1173975
[255]
GSM1173976
[256]
GSM1173977
[257]
GSM1173978
[258]
GSM1173979
[259]
GSM1173980
[260]
GSM1173981
[261]
GSM1173982
[262]
GSM1173983
[263]
GSM1173986
[264]
GSM1173987
[265]
GSM1173988
[266]
GSM1173989
[267]
GSM1173990
[268]
GSM1173991
[269]
GSM1173992
[270]
GSM1173993
[271]
GSM1173994
[272]
GSM1173995
[273]
GSM1173996
[274]
GSM1173997
[275]
GSM1173998
[276]
GSM1173999
[277]
GSM1174000
[278]
GSM1174001
[279]
GSM1174002
[280]
GSM1174003
[281]
GSM1174004
[282]
GSM1174005
[283]
GSM1174006
[284]
GSM1174007
[285]
GSM1174008
[286]
GSM1174009
[287]
GSM1174010
[288]
GSM1174011
[289]
GSM1174012
[290]
GSM1174013
[291]
GSM1174014
[292]
GSM1174015
[293]
GSM1174016
[294]
GSM1174017
[295]
GSM1174018
[296]
GSM1174019
[297]
GSM1174020
[298]
GSM1174021
[299]
GSM1174022
[300]
GSM1174023
[301]
GSM1174024
[302]
GSM1174025
[303]
GSM1174026
[304]
GSM1174027
[305]
GSM1174028
[306]
GSM1261392
[307]
GSM1261393
[308]
GSM1261394
[309]
GSM1261395
[310]
GSM1261396
[311]
GSM1261397
[312]
GSM1261398
[313]
GSM1261399
[314]
GSM1261400
[315]
GSM1261401
[316]
GSM1261402
[317]
GSM1261403
[318]
GSM1261404
[319]
GSM1261405
[320]
GSM1261406
[321]
GSM1261407
[322]
GSM1261408
[323]
GSM1261409
[324]
GSM1261410
[325]
GSM1261411
[326]
GSM1261412
[327]
GSM1261413
[328]
GSM1261414
[329]
GSM1263201
[330]
GSM1263202
[331]
GSM1263203
[332]
GSM1263204
[333]
GSM1263205
[334]
GSM1263206
[335]
GSM1263207
[336]
GSM1263208
[337]
GSM1263209
[338]
GSM1263210
[339]
GSM1263211
[340]
GSM1263212
[341]
GSM1263213
[342]
GSM1263214
[343]
GSM1263215
[344]
GSM1263216
[345]
GSM1263217
[346]
GSM1263218
[347]
GSM1263219
[348]
GSM1263220
sample_count
349
group_sizes
null
group_sizes_basis
null
platform
10558;6947;14951
taxon
Homo sapiens
title
Identification of distinct basal and luminal subsets of human bladder cancers with different sensitivities to frontline chemotherapy
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[6] object · 15 fields
id
data:geo:GSE78220
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE78220
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE78220
version
null
note
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material .
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material .
access_statement_kind
data_availability_statement
sample_accessions array · 28 items
[0]
GSM2069823
[1]
GSM2069824
[2]
GSM2069825
[3]
GSM2069826
[4]
GSM2069827
[5]
GSM2069828
[6]
GSM2069829
[7]
GSM2069830
[8]
GSM2069831
[9]
GSM2069832
[10]
GSM2069833
[11]
GSM2069834
[12]
GSM2069835
[13]
GSM2069836
[14]
GSM2069837
[15]
GSM2069838
[16]
GSM2069839
[17]
GSM2069840
[18]
GSM2069841
[19]
GSM2069842
[20]
GSM2069843
[21]
GSM2069844
[22]
GSM2069845
[23]
GSM2069846
[24]
GSM2069847
[25]
GSM2069848
[26]
GSM2069849
[27]
GSM2069850
sample_count
28
group_sizes
null
group_sizes_basis
null
platform
11154
taxon
Homo sapiens
title
mRNA expressions in pre-treatment melanomas undergoing anti-PD-1 checkpoint inhibition therapy
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[7] object · 15 fields
id
data:geo:GSE91061
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE91061
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE91061
version
null
note
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material .
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material .
access_statement_kind
data_availability_statement
sample_accessions array · 109 items
[0]
GSM2420259
[1]
GSM2420260
[2]
GSM2420261
[3]
GSM2420262
[4]
GSM2420263
[5]
GSM2420264
[6]
GSM2420265
[7]
GSM2420266
[8]
GSM2420267
[9]
GSM2420268
[10]
GSM2420269
[11]
GSM2420270
[12]
GSM2420271
[13]
GSM2420272
[14]
GSM2420273
[15]
GSM2420274
[16]
GSM2420275
[17]
GSM2420276
[18]
GSM2420277
[19]
GSM2420278
[20]
GSM2420279
[21]
GSM2420280
[22]
GSM2420281
[23]
GSM2420282
[24]
GSM2420283
[25]
GSM2420284
[26]
GSM2420285
[27]
GSM2420286
[28]
GSM2420287
[29]
GSM2420288
[30]
GSM2420289
[31]
GSM2420290
[32]
GSM2420291
[33]
GSM2420292
[34]
GSM2420293
[35]
GSM2420294
[36]
GSM2420295
[37]
GSM2420296
[38]
GSM2420297
[39]
GSM2420298
[40]
GSM2420299
[41]
GSM2420300
[42]
GSM2420301
[43]
GSM2420302
[44]
GSM2420303
[45]
GSM2420304
[46]
GSM2420305
[47]
GSM2420306
[48]
GSM2420307
[49]
GSM2420308
[50]
GSM2420310
[51]
GSM2420311
[52]
GSM2420312
[53]
GSM2420313
[54]
GSM2420316
[55]
GSM2420317
[56]
GSM2420318
[57]
GSM2420319
[58]
GSM2420320
[59]
GSM2420323
[60]
GSM2420324
[61]
GSM2420325
[62]
GSM2420326
[63]
GSM2420328
[64]
GSM2420329
[65]
GSM2420331
[66]
GSM2420332
[67]
GSM2420333
[68]
GSM2420334
[69]
GSM2420335
[70]
GSM2420336
[71]
GSM2420337
[72]
GSM2420338
[73]
GSM2420339
[74]
GSM2420340
[75]
GSM2420341
[76]
GSM2420342
[77]
GSM2420343
[78]
GSM2420344
[79]
GSM2420345
[80]
GSM2420346
[81]
GSM2420349
[82]
GSM2420350
[83]
GSM2420351
[84]
GSM2420352
[85]
GSM2420353
[86]
GSM2420354
[87]
GSM2420355
[88]
GSM2420356
[89]
GSM2420357
[90]
GSM2420358
[91]
GSM2420359
[92]
GSM2420360
[93]
GSM2420361
[94]
GSM2420362
[95]
GSM2420363
[96]
GSM2420364
[97]
GSM2420365
[98]
GSM2420366
[99]
GSM2420367
[100]
GSM2420368
[101]
GSM2420369
[102]
GSM2420370
[103]
GSM2420371
[104]
GSM2420372
[105]
GSM2420373
[106]
GSM2420374
[107]
GSM2420375
[108]
GSM2420376
sample_count
109
group_sizes
null
group_sizes_basis
null
platform
9052
taxon
Homo sapiens
title
Molecular portraits of tumor mutational and micro-environmental sculpting by immune checkpoint blockade therapy
resolution_checked_at
2026-11-01T15:39:55Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
gaps array · 14 items
[0]
asset:data:geo:GSE13507 not downloaded
[1]
asset:data:geo:GSE13507 licence not read
[2]
asset:data:geo:GSE176307 not downloaded
[3]
asset:data:geo:GSE176307 licence not read
[4]
asset:data:geo:GSE31684 not downloaded
[5]
asset:data:geo:GSE31684 licence not read
[6]
asset:data:geo:GSE32894 not downloaded
[7]
asset:data:geo:GSE32894 licence not read
[8]
asset:data:geo:GSE48277 not downloaded
[9]
asset:data:geo:GSE48277 licence not read
[10]
asset:data:geo:GSE78220 not downloaded
[11]
asset:data:geo:GSE78220 licence not read
[12]
asset:data:geo:GSE91061 not downloaded
[13]
asset:data:geo:GSE91061 licence not read
analysis object · 4 fields
state
partial
methods array · 3 items
[0] object · 10 fields
id
method-1
family
correlation_analysis
specific
spearman
label
Correlation analysis
dsl_operations array · 1 item
[0]
spearman_rho
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
paired_numeric_columns
evidence object · 3 fields
score
1
band
verbatim
quote
Coexpression was analyzed statistically by using the Spearman correlation coefficient to identify the expression differences of 122 immunostimulators between the high- and low-IGFBP7 groups
[1] object · 10 fields
id
method-2
family
survival_analysis
specific
log_rank_test
label
Survival analysis
dsl_operations array · 1 item
[0]
logrank_test
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
time_to_event_with_censoring
evidence object · 3 fields
score
0.8
band
high
quote
log-rank
[2] object · 10 fields
id
method-3
family
contingency_analysis
specific
chi_square
label
Categorical (contingency table) analysis
dsl_operations array · 1 item
[0]
chi_square_test
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
categorical_cross_tabulation
evidence object · 3 fields
score
0.8
band
high
quote
chi-square
targets array · 0 items
gaps array · 1 item
[0]
method.reader_differs_from_extractor
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
true
required_operations array · 1 item
[0]
spearman_rho
missing_operations array · 0 items
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: spearman.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 7 items
[0]
GSE176307
[1]
GSE13507
[2]
GSE31684
[3]
GSE32894
[4]
GSE48277
[5]
GSE78220
[6]
GSE91061
resolved_accessions array · 7 items
[0]
GSE176307
[1]
GSE13507
[2]
GSE31684
[3]
GSE32894
[4]
GSE48277
[5]
GSE78220
[6]
GSE91061
statements array · 1 item
[0]
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/ Supplementary Material .
basis
The paper names GSE176307, GSE13507, GSE31684, GSE32894, GSE48277, GSE78220, GSE91061 in Gene Expression Omnibus (GEO) database and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 1 item
[0]
spearman_rho
assets array · 2 items
[0]
source:pmid:35812369
[1]
data:geo:GSE13507
steps array · 1 item
[0]
run_analysis
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE13507
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-11-01T17:54:31Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
5
usage object · 3 fields
prompt_tokens
16304
completion_tokens
2884
cached_tokens
256
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:35812369
type
paper
label
pmid:35812369
[1] object · 3 fields
id
source:pmid:35812369
type
manuscript
label
PMID 35812369 full text
[2] object · 3 fields
id
data:geo:GSE13507
type
dataset
label
GEO GSE13507
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:35812369
type
paper
label
pmid:35812369
[1] object · 3 fields
id
source:pmid:35812369
type
manuscript
label
PMID 35812369 full text
[2] object · 3 fields
id
data:geo:GSE13507
type
dataset
label
GEO GSE13507
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-35812369
type
extraction
used array · 1 item
[0]
source:pmid:35812369
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE13507
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE13507
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:35812369
parent_hash
sha256:1fd2f3fdf4bfe325bb99656df7c13aad3fe0052637925137a42a4ba3b9d329da
fork_of
null
gaps array · 19 items
[0]
asset:data:geo:GSE13507 licence not read
[1]
asset:data:geo:GSE13507 not downloaded
[2]
asset:data:geo:GSE176307 licence not read
[3]
asset:data:geo:GSE176307 not downloaded
[4]
asset:data:geo:GSE31684 licence not read
[5]
asset:data:geo:GSE31684 not downloaded
[6]
asset:data:geo:GSE32894 licence not read
[7]
asset:data:geo:GSE32894 not downloaded
[8]
asset:data:geo:GSE48277 licence not read
[9]
asset:data:geo:GSE48277 not downloaded
[10]
asset:data:geo:GSE78220 licence not read
[11]
asset:data:geo:GSE78220 not downloaded
[12]
asset:data:geo:GSE91061 licence not read
[13]
asset:data:geo:GSE91061 not downloaded
[14]
execution.not_run
[15]
method.reader_differs_from_extractor
[16]
review.human_critique
[17]
review.independent_reader
[18]
review.machine_critique
assays array · 1 item
[0] object · 11 fields
role
analysis
definition_id
correlation_analysis
definition_version
f2132e96ae6c7a4e
required_operations array · 1 item
[0]
spearman_rho
support_state
supported
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
Coexpression was analyzed statistically by using the Spearman correlation coefficient to identify the expression differences of 122 immunostimulators between the high- and low-IGFBP7 groups
order_basis
analysis_only
id
assay:1
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:35812369", "kind": "science-record", "revision": 3, "content_hash": "sha256:3e01961c92a91fb6a489eef2a43a533f90e8ffd9d2b97b1455297c9a6a08a774", "created_at": "2026-11-01T18:14:52Z", "updated_at": "2026-11-01T21:28:20Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "IGFBP7 and the Tumor Immune Landscape: A Novel Target for Immunotherapy in Bladder Cancer.", "doi": "10.3389/fimmu.2022.898493", "pmid": "35812369", "authors": ["Xianyanling Yi", "Xiaonan Zheng", "Hang Xu", "Jin Li", "Tianyi Zhang", "Peng Ge", "Dazhou Liao", "Hong Li", "Xiaoyan Lyu", "Jianzhong Ai"], "journal": "Frontiers in immunology", "year": 2022, "abstract": "Insulin-like growth factor binding protein-7 (IGFBP7) was recently reported to be a ligand of CD93, a potential target to normalize vasculature and attenuate immunotherapy. However, its role in the tumor microenvironment (TME) and immunotherapy response of bladder cancer (BLCA) remains unclear. We comprehensively evaluated the correlation between IGFBP7 and multiple immunological characteristics of BLCA across The Cancer Genome Atlas (TCGA) and two external cohorts. Importantly, the response of IGFBP7-grouped BLCA patients to immunotherapy was predicted and validated by five real-word immunotherapy cohorts. Finally, we developed an IGFBP7-based immune risk model validated by five independent cohorts. IGFBP7 modulated the TME across pan-caners. In BLCA, high expression of IGFBP7 was correlated with more aggressive clinical features. IGFBP7 was positively associated with immunomodulators and promoted tumor-infiltrating lymphocyte trafficking into the tumor microenvironment. However, T cells recognition and tumor cell killing were lower in the high-IGFBP7 group. In addition, high expression of IGFBP7 displayed lower enrichment scores for most pro-immunotherapy pathways. Clinical data from IMvigor210 and GSE176307 indicated that IGFBP7 negatively correlated with the BLCA immunotherapy response. The same trend was also observed in a renal cell carcinoma (RCC) cohort and two melanoma cohorts. Notably, urothelial and luminal differentiation were less frequently observed in the high-IGFBP7 group, while neuroendocrine differentiation was more frequently observed. Mechanistically, high IGFBP7 was associated with an enriched hypoxia pathway and higher expression of key genes in ERBB therapy and antiangiogenic therapy. Furthermore, our IGFBP7-based immune risk model was able to predict the prognosis and response to immunotherapy with good accuracy (5-year AUC = 0.734). Overall, IGFBP7 plays a critical role in the immunoregulation and TME of BLCA and may serve as a novel potential target for combination treatment with immunotherapy for BLCA.", "claims": [{"id": "claim-method", "statement": "Coexpression was analyzed statistically by using the Spearman correlation coefficient to identify the expression differences of 122 immunostimulators between the high- and low-IGFBP7 groups", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:35812369", "locator": "sections[6] \"The Effect of IGBP7 on Immunological Characteristics in BLCA\" paragraph 2", "quote": "Coexpression was analyzed statistically by using the Spearman correlation coefficient to identify the expression differences of 122 immunostimulators between the high- and low-IGFBP7 groups"}], "state": "complete"}, {"id": "claim-data-access", "statement": "The datasets presented in this study can be found in online repositories. 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