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pmid:36497225

An Inflammatory Response-Related Gene Signature Can Predict the Prognosis and Impact the Immune Status of Lung Adenocarcinoma.

Yubo Shi · Yingchun Zhao · Yuanyong Wang

Cancers · 2022 doi:10.3390/cancers14235744

Paper

complete

Experiment

complete

Data

partial

Analysis

partial

Execution

absent

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title
An Inflammatory Response-Related Gene Signature Can Predict the Prognosis and Impact the Immune Status of Lung Adenocarcinoma.
doi
10.3390/cancers14235744
pmid
36497225
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Yubo Shi
[1]
Yingchun Zhao
[2]
Yuanyong Wang
journal
Cancers
year
2022
abstract
Lung adenocarcinoma (LUAD) accounts for a cancer with high heterogeneity and poor prognostic outcome. Nonetheless, it is still unknown about the relation between inflammatory response-related genes (IRGs) and LUAD. This study used LASSO-Cox regression for establishing the multigene prognostic signature based on TCGA and the GSE31210 cohorts. In addition, gene set enrichment analysis (GSEA) was performed for GO and KEGG analyses. By contrast, single-sample GSEA (ssGSEA) investigated immune cell infiltration scores as well as the immune pathway activity. We also conducted qRT-PCR and IHC to evaluate prognostic gene expression at protein and mRNA levels within LUAD and adjacent healthy samples. As a result, a novel prognostic signature involving 10 IRGs was identified. Furthermore, the signature has been validated as being important in functional analysis, TME, drug sensitivity, and prognosis prediction in LUAD. Moreover, prognostic genes showed significant expression at protein and mRNA levels in LUAD compared with normal samples. The signature involving 10 IRGs could potentially predict LUAD prognosis.
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We established the prognosis model through LASSO-penalized Cox regression analysis to minimize the overfitting risk [11].
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We established the prognosis model through LASSO-penalized Cox regression analysis to minimize the overfitting risk [11].
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A 10-IRG prognostic signature established with LASSO-Cox regression predicted overall survival in LUAD.
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As a result, a novel prognostic signature involving 10 IRGs was identified.
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The signature involving 10 IRGs could potentially predict LUAD prognosis.
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A 10-IRG prognostic signature established with LASSO-Cox regression predicted overall survival in LUAD.
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Gene expression data for pathological stage I-II lung adenocarcinomas
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Complete file
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This study used LASSO-Cox regression for establishing the multigene prognostic signature based on TCGA and the GSE31210 cohorts. In addition, gene set enrichment analysis (GSEA) was performed for GO and KEGG analyses. By contrast, single-sample GSEA (ssGSEA) investigated immune cell infiltration scores as well as the immune pathway activity. We also conducted qRT-PCR and IHC to evaluate prognostic gene expression at protein and mRNA levels within LUAD and adjacent healthy samples. As a result, a novel prognostic signature involving 10 IRGs was identified. Furthermore, the signature has been validated as being important in functional analysis, TME, drug sensitivity, and prognosis prediction in LUAD. Moreover, prognostic genes showed significant expression at protein and mRNA levels in LUAD compared with normal samples. The signature involving 10 IRGs could potentially predict LUAD prognosis.", "claims": [{"id": "claim-method", "statement": "We established the prognosis model through LASSO-penalized Cox regression analysis to minimize the overfitting risk [11].", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:36497225", "locator": "sections[4] \"2.2. 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