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pmid:36755971
A glycolysis-related gene signatures in diffuse large B-Cell lymphoma predicts prognosis and tumor immune microenvironment.
Yingying Cui · Changsen Leng
Frontiers in cell and developmental biology · 2023 doi:10.3389/fcell.2023.1070777
Paper
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Experiment
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Data
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Analysis
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Complete file
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In this study, we aimed to establish a glycolysis-related prognostic model for the risk stratification, prognosis prediction, and immune landscape evaluation in patients with DLBCL. Methods: Three independent datasets GSE181063, GSE10846, and GSE53786 containing gene expression profiles and clinical data were downloaded from the Gene Expression Omnibus (GEO) database. The glycolysis-related prognostic model was developed with Cox and Least Absolute Shrinkage and Selector Operation (LASSO) regression and validated. A nomogram integrating clinical factors and glycolytic risk scores was constructed. The composition of the TME was analyzed with the ESTIMATE algorithm and single-sample gene set enrichment analysis (ssGSEA). Results: A glycolytic risk model containing eight genes was developed. The area under the receiver operating characteristic (ROC) curve (AUC) for the 1-, 3-, and 5-year was 0.718, 0.695, and 0.688, respectively. Patients in the high-risk group had significantly lower immune scores, elevated tumor purity, and poorer survival compared with those in the low-risk group. The nomogram constructed based on glycolytic risk score, age, Eastern Cooperative Oncology Group performance status (ECOG-PS), use of rituximab, and cell of origin (COO) displayed better prediction performance compared with the International Prognostic Index (IPI) in DLBCL. The glycolytic risk score was negatively correlated with the infiltration level of activated CD8 T cells, activated dendritic cells, natural killer cells, and macrophages and immune checkpoint molecules including PD-L2, CTLA4, TIM-3, TIGIT, and B7-H3. Conclusion: These results suggested that the glycolytic risk model could accurately and stably predict the prognosis of patients with DLBCL and might unearth the possible explanation for the glycolysis-related poor prognosis.", "claims": [{"id": "claim-method", "statement": "Cox and least absolute shrinkage and selection operator (LASSO) regression analyses were used in the training cohort to identify the glycolysis-related prognostic model.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:36755971", "locator": "sections[4] \"2.2 Glycolytic risk model construction and validation\" paragraph 2", "quote": "Cox and least absolute shrinkage and selection operator (LASSO) regression analyses were used in the training cohort to identify the glycolysis-related prognostic model."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The datasets presented in this study can be found in online repositories. 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"GSM5483049", "GSM5483050", "GSM5483051", "GSM5483052", "GSM5483053", "GSM5483054", "GSM5483056", "GSM5483057", "GSM5483058", "GSM5483059", "GSM5483060", "GSM5483061", "GSM5483062", "GSM5483063", "GSM5483064", "GSM5483065", "GSM5483066", "GSM5483067", "GSM5483068", "GSM5483069", "GSM5483070", "GSM5483071", "GSM5483072", "GSM5483073", "GSM5483074", "GSM5483075", "GSM5483076", "GSM5483077", "GSM5483078", "GSM5483079", "GSM5483080", "GSM5483081", "GSM5483082", "GSM5483083", "GSM5483084", "GSM5483085", "GSM5483086", "GSM5483087", "GSM5483088", "GSM5483089", "GSM5483090", "GSM5483091", "GSM5483092", "GSM5483093", "GSM5483094", "GSM5483095", "GSM5483096", "GSM5483097", "GSM5483098", "GSM5483099", "GSM5483100", "GSM5483101", "GSM5483102", "GSM5483103", "GSM5483104", "GSM5483105", "GSM5483106", "GSM5483107", "GSM5483108", "GSM5483109", "GSM5483110", "GSM5483111", "GSM5483112", "GSM5483113", "GSM5483114", "GSM5483115", "GSM5483116", "GSM5483117", "GSM5483118", "GSM5483119", "GSM5483120", "GSM5483121", "GSM5483122", "GSM5483123", "GSM5483124", "GSM5483125", "GSM5483126", "GSM5483127", "GSM5483128", "GSM5483129", "GSM5483130", "GSM5483131", "GSM5483132", "GSM5483133", "GSM5483134", "GSM5483135", "GSM5483136", "GSM5483137", "GSM5483138", "GSM5483139", "GSM5483140", "GSM5483141", "GSM5483142", "GSM5483143", "GSM5483144", "GSM5483145", "GSM5483146", "GSM5483147", "GSM5483148", "GSM5483149", "GSM5483150", "GSM5483151", "GSM5483152", "GSM5483153", "GSM5483154", "GSM5483155", "GSM5483156", "GSM5483157", "GSM5483158", "GSM5483159", "GSM5483160", "GSM5483161", "GSM5483162", "GSM5483163", "GSM5483164", "GSM5483165", "GSM5483166", "GSM5483167", "GSM5483168", "GSM5483169", "GSM5483170", "GSM5483171", "GSM5483172", "GSM5483173", "GSM5483174", "GSM5483175", "GSM5483176", "GSM5483177", "GSM5483178", "GSM5483179", "GSM5483180", "GSM5483181", "GSM5483182", "GSM5483183", "GSM5483184", "GSM5483185", "GSM5483186", "GSM5483187", "GSM5483188", "GSM5483189", "GSM5483190", "GSM5483191", "GSM5483192", "GSM5483193", "GSM5483194", "GSM5483195", "GSM5483196", "GSM5483197", "GSM5483198", "GSM5483199", "GSM5483200", "GSM5483201", "GSM5483202", "GSM5483203", "GSM5483204", "GSM5483205", "GSM5483206", "GSM5483207", "GSM5483208", "GSM5483209", "GSM5483210", "GSM5483211", "GSM5483212", "GSM5483213", "GSM5483214", "GSM5483215", "GSM5483216", "GSM5483217", "GSM5483218", "GSM5483219", "GSM5483220", "GSM5483221", "GSM5483222", "GSM5483223", "GSM5483224", "GSM5483225", "GSM5483226", "GSM5483227", "GSM5483228", "GSM5483229", "GSM5483230", "GSM5483231", "GSM5483232", "GSM5483233", "GSM5483234", "GSM5483235", "GSM5483236", "GSM5483237", "GSM5483238", "GSM5483239", "GSM5483240", "GSM5483241", "GSM5483242", "GSM5483243", "GSM5483244", "GSM5483245", "GSM5483246", "GSM5483247", "GSM5483248", "GSM5483249", "GSM5483250", "GSM5483251", "GSM5483252", "GSM5483253", "GSM5483254", "GSM5483255", "GSM5483256", "GSM5483257", "GSM5483258", "GSM5483259", "GSM5483260", "GSM5483261", "GSM5483262", "GSM5483263", "GSM5483264", "GSM5483265", "GSM5483266", "GSM5483267", "GSM5483268", "GSM5483269", "GSM5483270", "GSM5483271", "GSM5483272", "GSM5483273", "GSM5483274", "GSM5483275", "GSM5483276", "GSM5483277", "GSM5483278", "GSM5483279", "GSM5483280", "GSM5483281", "GSM5483282", "GSM5483283", "GSM5483284", "GSM5483285", "GSM5483286", "GSM5483287", "GSM5483288", "GSM5483289", "GSM5483290", "GSM5483291", "GSM5483292", "GSM5483293", "GSM5483294", "GSM5483295", "GSM5483296", "GSM5483297", "GSM5483298", "GSM5483299", "GSM5483300", "GSM5483301", "GSM5483302", "GSM5483303", "GSM5483304", "GSM5483305", "GSM5483306", "GSM5483307", "GSM5483308", "GSM5483309", "GSM5483310", "GSM5483311", "GSM5483312", "GSM5483313", "GSM5483314", "GSM5483315", "GSM5483316", "GSM5483317", "GSM5483318", "GSM5483319", "GSM5483320", "GSM5483321", "GSM5483322", "GSM5483323", "GSM5483324", "GSM5483325", "GSM5483326", "GSM5483327", "GSM5483328", "GSM5483329", "GSM5483330", "GSM5483331", "GSM5483332", "GSM5483333", "GSM5483334", "GSM5483335", "GSM5483336", "GSM5483337", "GSM5483338", "GSM5483339", "GSM5483340", "GSM5483341", "GSM5483342", "GSM5483343", "GSM5483344", "GSM5483345", "GSM5483346", "GSM5483347", "GSM5483348", "GSM5483349", "GSM5483350", "GSM5483351", "GSM5483352", "GSM5483353", "GSM5483354", "GSM5483355", "GSM5483356", "GSM5483357", "GSM5483358", "GSM5483359", "GSM5483360", "GSM5483361", "GSM5483362", "GSM5483363", "GSM5483364", "GSM5483365", "GSM5483366", "GSM5483367", "GSM5483368", "GSM5483369", "GSM5483370", "GSM5483371", "GSM5483372", "GSM5483373", "GSM5483374", "GSM5483375", "GSM5483376", "GSM5483377", "GSM5483378", "GSM5483379", "GSM5483380", "GSM5483381", "GSM5483382", "GSM5483383", "GSM5483384", "GSM5483385", "GSM5483386", "GSM5483387", "GSM5483388", "GSM5483389", "GSM5483390", "GSM5483391", "GSM5483392", "GSM5483393", "GSM5483394", "GSM5483395", "GSM5483396", "GSM5483397", "GSM5483398", "GSM5483399", "GSM5483400", "GSM5483401", "GSM5483402", "GSM5483403", "GSM5483404", "GSM5483405", "GSM5483406", "GSM5483407", "GSM5483408", "GSM5483409", "GSM5483410", "GSM5483411", "GSM5483412", "GSM5483413", "GSM5483414", "GSM5483415", "GSM5483416", "GSM5483417", "GSM5483418", "GSM5483419", "GSM5483420", "GSM5483421", "GSM5483422", "GSM5483423", "GSM5483424", "GSM5483425", "GSM5483426", "GSM5483427", "GSM5483428", "GSM5483429", "GSM5483430", "GSM5483431", "GSM5483432", "GSM5483433", "GSM5483434", "GSM5483435", "GSM5483436", "GSM5483437", "GSM5483438", "GSM5483439", "GSM5483440", "GSM5483441", "GSM5483442", "GSM5483443", "GSM5483444", "GSM5483445", "GSM5483446", "GSM5483447", "GSM5483448", "GSM5483449", "GSM5483450", "GSM5483451", "GSM5483452", "GSM5483453", "GSM5483454", "GSM5483455", "GSM5483456", "GSM5483457", "GSM5483458", "GSM5483459", "GSM5483460", "GSM5483461", "GSM5483462", "GSM5483463", "GSM5483464", "GSM5483465", "GSM5483466", "GSM5483467", "GSM5483468", "GSM5483469", "GSM5483470", "GSM5483471", "GSM5483472", "GSM5483473", "GSM5483474", "GSM5483475", "GSM5483476", "GSM5483477", "GSM5483478", "GSM5483479", "GSM5483480", "GSM5483481", "GSM5483482", "GSM5483483", "GSM5483484", "GSM5483485", "GSM5483486", "GSM5483487", "GSM5483488", "GSM5483489", "GSM5483490", "GSM5483491", "GSM5483492", "GSM5483493", "GSM5483494", "GSM5483495", "GSM5483496", "GSM5483497", "GSM5483498", "GSM5483499", "GSM5483500", "GSM5483501", "GSM5483502", "GSM5483503", "GSM5483504", "GSM5483505", "GSM5483506", "GSM5483507", "GSM5483508", "GSM5483509", "GSM5483510", "GSM5483511", "GSM5483512", "GSM5483513", "GSM5483514", "GSM5483515", "GSM5483516", "GSM5483517", "GSM5483518", "GSM5483519", "GSM5483520", "GSM5483521", "GSM5483522", "GSM5483523", "GSM5483524", "GSM5483525", "GSM5483526", "GSM5483527", "GSM5483528", "GSM5483529", "GSM5483530", "GSM5483531", "GSM5483532", "GSM5483533", "GSM5483534", "GSM5483535", "GSM5483536", "GSM5483537", "GSM5483538", "GSM5483539", "GSM5483540", "GSM5483541", "GSM5483542", "GSM5483543", "GSM5483544", "GSM5483545", "GSM5483546", "GSM5483547", "GSM5483548", "GSM5483549", "GSM5483550", "GSM5483551", "GSM5483552", "GSM5483553", "GSM5483554", "GSM5483555", "GSM5483556", "GSM5483557", "GSM5483558", "GSM5483559", "GSM5483560", "GSM5483561", "GSM5483562", "GSM5483563", "GSM5483564", "GSM5483565", "GSM5483566", "GSM5483567", "GSM5483568", "GSM5483569", "GSM5483570", "GSM5483571", "GSM5483572", "GSM5483573", "GSM5483574", "GSM5483575", "GSM5483576", "GSM5483577", "GSM5483578", "GSM5483579", "GSM5483580", "GSM5483581", "GSM5483582", "GSM5483583", "GSM5483584", "GSM5483585", "GSM5483586", "GSM5483587", "GSM5483588", "GSM5483589", "GSM5483590", "GSM5483591", "GSM5483592", "GSM5483593", "GSM5483594", "GSM5483595", "GSM5483596", "GSM5483597", "GSM5483598", "GSM5483599", "GSM5483600", "GSM5483601", "GSM5483602", "GSM5483603", "GSM5483604", "GSM5483605", "GSM5483606", "GSM5483607", "GSM5483608", "GSM5483609", "GSM5483610", "GSM5483611", "GSM5483612", "GSM5483613", "GSM5483614", "GSM5483615", "GSM5483616", "GSM5483617", "GSM5483618", "GSM5483619", "GSM5483620", "GSM5483621", "GSM5483622", "GSM5483623", "GSM5483624", "GSM5483625", "GSM5483626", "GSM5483627", "GSM5483628", "GSM5483629", "GSM5483630", "GSM5483631", "GSM5483632", "GSM5483633", "GSM5483634", "GSM5483635", "GSM5483636", "GSM5483637", "GSM5483638", "GSM5483639", "GSM5483640", "GSM5483641", "GSM5483642", "GSM5483643", "GSM5483644", "GSM5483645", "GSM5483646", "GSM5483647", "GSM5483648", "GSM5483649", "GSM5483650", "GSM5483651", "GSM5483652", "GSM5483653", "GSM5483654", "GSM5483655", "GSM5483656", "GSM5483657", "GSM5483658", "GSM5483659", "GSM5483660", "GSM5483661", "GSM5483662", "GSM5483663", "GSM5483664", "GSM5483665", "GSM5483666", "GSM5483667", "GSM5483668", "GSM5483669", "GSM5483670", "GSM5483671", "GSM5483672", "GSM5483673", "GSM5483674", "GSM5483675", "GSM5483676", "GSM5483677", "GSM5483678", "GSM5483679", "GSM5483680", "GSM5483681", "GSM5483682", "GSM5483683", "GSM5483684", "GSM5483685", "GSM5483686", "GSM5483687", "GSM5483688", "GSM5483689", "GSM5483690", "GSM5483691", "GSM5483692", "GSM5483693", "GSM5483694", "GSM5483695", "GSM5483696", "GSM5483697", "GSM5483698", "GSM5483699", "GSM5483700", "GSM5483701", "GSM5483702", "GSM5483703", "GSM5483704", "GSM5483705", "GSM5483706", "GSM5483707", "GSM5483708", "GSM5483709", "GSM5483710", "GSM5483711", "GSM5483712", "GSM5483713", "GSM5483714", "GSM5483715", "GSM5483716", "GSM5483717", "GSM5483718", "GSM5483719", "GSM5483720", "GSM5483721", "GSM5483722", "GSM5483723", "GSM5483724", "GSM5483725", "GSM5483726", "GSM5483727", "GSM5483728", "GSM5483729", "GSM5483730", "GSM5483731", "GSM5483732", "GSM5483733", "GSM5483734", "GSM5483735", "GSM5483736", "GSM5483737", "GSM5483738", "GSM5483739", "GSM5483740", "GSM5483741", "GSM5483742", "GSM5483743", "GSM5483744", "GSM5483745", "GSM5483746", "GSM5483747", "GSM5483748", "GSM5483749", "GSM5483750", "GSM5483751", "GSM5483752", "GSM5483753", "GSM5483754", "GSM5483755", "GSM5483756", "GSM5483757", "GSM5483758", "GSM5483759", "GSM5483760", "GSM5483761", "GSM5483762", "GSM5483763", "GSM5483764", "GSM5483765", "GSM5483766", "GSM5483767", "GSM5483768", "GSM5483769", "GSM5483770", "GSM5483771", "GSM5483772", "GSM5483773", "GSM5483774", "GSM5483775", "GSM5483776", "GSM5483777", "GSM5483778", "GSM5483779", "GSM5483780", "GSM5483781", "GSM5483782", "GSM5483783", "GSM5483784", "GSM5483785", "GSM5483786", "GSM5483787", "GSM5483788", "GSM5483789", "GSM5483790", "GSM5483791", "GSM5483792", "GSM5483793", "GSM5483794", "GSM5483795", "GSM5483796", "GSM5483797", "GSM5483798", "GSM5483799", "GSM5483800", "GSM5483801", "GSM5483802", "GSM5483803", "GSM5483804", "GSM5483805", "GSM5483806", "GSM5483808", "GSM5483810", "GSM5483812", "GSM5483813", "GSM5483815", "GSM5483817", "GSM5483818", "GSM5483820", "GSM5483822", "GSM5483823", "GSM5483825", "GSM5483827", "GSM5483828", "GSM5483830", "GSM5483832", "GSM5483834", "GSM5483835", "GSM5483837", "GSM5483839", "GSM5483840", "GSM5483842", "GSM5483843", "GSM5483845", "GSM5483846", "GSM5483848", "GSM5483849", "GSM5483851", "GSM5483853", "GSM5483854", "GSM5483856", "GSM5483857", "GSM5483858", "GSM5483859", "GSM5483860", "GSM5483861", "GSM5483862", "GSM5483863", "GSM5483864", "GSM5483865", "GSM5483866", "GSM5483867", "GSM5483868", "GSM5483869", "GSM5483870", "GSM5483871", "GSM5483872", "GSM5483873", "GSM5483874", "GSM5483875", "GSM5483876", "GSM5483877", "GSM5483878", "GSM5483879", "GSM5483880", "GSM5483881", "GSM5483882", "GSM5483883", "GSM5483884", "GSM5483885", "GSM5483886", "GSM5483887", "GSM5483888", "GSM5483889", "GSM5483890", "GSM5483891", "GSM5483892", "GSM5483893", "GSM5483894", "GSM5483895", "GSM5483896", "GSM5483897", "GSM5483898", "GSM5483899", "GSM5483900", "GSM5483901", "GSM5483902", "GSM5483903", "GSM5483904", "GSM5483905", "GSM5483906", "GSM5483907", "GSM5483908", "GSM5483909", "GSM5483910", "GSM5483911", "GSM5483912", "GSM5483913", "GSM5483914", "GSM5483915", "GSM5483916", "GSM5483917", "GSM5483918", "GSM5483919", "GSM5483920", "GSM5483921", "GSM5483922", "GSM5483923", "GSM5483924", "GSM5483925", "GSM5483926", "GSM5483927", "GSM5483928", "GSM5483929", "GSM5483930", "GSM5483931", "GSM5483932", "GSM5483933", "GSM5483934", "GSM5483935", "GSM5483936", "GSM5483937", "GSM5483938", "GSM5483939", "GSM5483940", "GSM5483941", "GSM5483942", "GSM5483943", "GSM5483944", "GSM5483945", "GSM5483946", "GSM5483947", "GSM5483948", "GSM5483949", "GSM5483950", "GSM5483951", "GSM5483952", "GSM5483953", "GSM5483954", "GSM5483955", "GSM5483956", "GSM5483957", "GSM5483958", "GSM5483959", "GSM5483960", "GSM5483961", "GSM5483962", "GSM5483963", "GSM5483964", "GSM5483965", "GSM5483966", "GSM5483967", "GSM5483968", "GSM5483969", "GSM5483970", "GSM5483971", "GSM5483972", "GSM5483973", "GSM5483974", "GSM5483975", "GSM5483976", "GSM5483977", "GSM5483978", "GSM5483979", "GSM5483980", "GSM5483981", "GSM5483982", "GSM5483983", "GSM5483984", "GSM5483985", "GSM5483986", "GSM5483987", "GSM5483988", "GSM5483989", "GSM5483990", "GSM5483991", "GSM5483992", "GSM5483993", "GSM5483994", "GSM5483995", "GSM5483996", "GSM5483997", "GSM5483998", "GSM5483999", "GSM5484000", "GSM5484001", "GSM5484002", "GSM5484003", "GSM5484004", "GSM5484005", "GSM5484006", "GSM5484007", "GSM5484008", "GSM5484009", "GSM5484010", "GSM5484011", "GSM5484012", "GSM5484013", "GSM5484014", "GSM5484015", "GSM5484016", "GSM5484017", "GSM5484018", "GSM5484019", "GSM5484020", "GSM5484021", "GSM5484022", "GSM5484023", "GSM5484024", "GSM5484025", "GSM5484026", "GSM5484027", "GSM5484028", "GSM5484029", "GSM5484030", "GSM5484031", "GSM5484032", "GSM5484033", "GSM5484034", "GSM5484035", "GSM5484036", "GSM5484037", "GSM5484038", "GSM5484039", "GSM5484040", "GSM5484041", "GSM5484042", "GSM5484043", "GSM5484044", "GSM5484045", "GSM5484046", "GSM5484047", "GSM5484048", "GSM5484049", "GSM5484050", "GSM5484051", "GSM5484052", "GSM5484053", "GSM5484054", "GSM5484055", "GSM5484056", "GSM5484057", "GSM5484058", "GSM5484059", "GSM5484060", "GSM5484061", "GSM5484062", "GSM5484063", 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