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pmid:36980858

SERPINF1 Mediates Tumor Progression and Stemness in Glioma.

Lairong Song · Xulei Huo · Xiaojie Li · Xiaoying Xu · Yi Zheng · Da Li · Junting Zhang · Ke Wang · Liang Wang · Zhen Wu

Genes · 2023 doi:10.3390/genes14030580

Paper

complete

Experiment

complete

Data

partial

Analysis

partial

Execution

absent

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pmid:36980858
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title
SERPINF1 Mediates Tumor Progression and Stemness in Glioma.
doi
10.3390/genes14030580
pmid
36980858
authors array · 10 items
[0]
Lairong Song
[1]
Xulei Huo
[2]
Xiaojie Li
[3]
Xiaoying Xu
[4]
Yi Zheng
[5]
Da Li
[6]
Junting Zhang
[7]
Ke Wang
[8]
Liang Wang
[9]
Zhen Wu
journal
Genes
year
2023
abstract
Serpin family F member 1 (SERPINF1) reportedly plays multiple roles in various tumors; however, its clinical significance and molecular functions in glioma have been largely understudied. In the present study, we analyzed the prognostic value of SERPINF1 in three independent glioma datasets. Next, we explored the molecular functions and transcriptional regulation of SERPINF1 at the single-cell level. Moreover, in vitro experiments were conducted to evaluate the roles of SERPINF1 in the proliferation, invasion, migration, and stemness of glioma cells. Our results showed that a higher expression of SERPINF1 correlated with a poor overall survival rate in glioma patients (hazard ratio: 4.061 in TCGA, 2.017 in CGGA, and 1.675 in GSE16011, p < 0.001). Besides, SERPINF1 knockdown could suppress the proliferation, invasion, and migration of glioma cells in vitro. In addition, SERPINF1 expression was significantly upregulated in glioma stem cells (GSCs) compared to parental glioma cells. Knocking down SERPINF1 impaired the sphere formation of GSC-A172 and GSC-LN18. Bioinformatics analysis revealed that Notch signaling activation was closely associated with high SERPINF1 expression at the single-cell level. Furthermore, STAT1, CREM, and NR2F2 may participate in the transcriptional regulation of SERPINF1 in glioma. Overall, our results suggest that SERPINF1 may be a candidate prognostic predictor and potential therapeutic target for glioma.
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Kaplan–Meier survival analysis was used to evaluate the stratification ability of SERPINF1.
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Our results showed that a higher expression of SERPINF1 correlated with a poor overall survival rate in glioma patients (hazard ratio: 4.061 in TCGA, 2.017 in CGGA, and 1.675 in GSE16011, p < 0.001).
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Our results showed that a higher expression of SERPINF1 correlated with a poor overall survival rate in glioma patients (hazard ratio: 4.061 in TCGA, 2.017 in CGGA, and 1.675 in GSE16011, p < 0.001).
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Our results showed that a higher expression of SERPINF1 correlated with a poor overall survival rate in glioma patients (hazard ratio: 4.061 in TCGA, 2.017 in CGGA, and 1.675 in GSE16011, p < 0.001).
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Intrinsic Gene Expression Profiles of Gliomas are a Better Predictor of Survival than Histology
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Complete file
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Besides, SERPINF1 knockdown could suppress the proliferation, invasion,", "article/10.3390/genes14030580/s1, Figure S1: Knockdown efficiency of SERPINF1 in A172 and LN18 veri", "gical images of A172 and LN18 after SERPINF1 knockdown; Figure S3: ChIP-seq data of the TFs in Cist"], "order_basis": "paper_text_order:790", "id": "assay:1"}, {"role": "data_generation", "definition_id": "rna_seq", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["rials and Methods 2.1. Patients and Datasets RNA-sequencing (RNA-seq) data and clinical information of 6", "s 2.1. 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In addition, the microarray data and clinical information of 248 gliomas"], "order_basis": "paper_text_order:1738", "id": "assay:3"}, {"role": "data_generation", "definition_id": "scrna_seq", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "unsupported", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["applied to assess the prognostic value. 2.3. scRNA-seq Data Processing of Glioma Samples The scRNA-", "NA-seq Data Processing of Glioma Samples The scRNA-seq data of three glioma samples were obtained f"], "order_basis": "paper_text_order:2175", "id": "assay:4"}, {"role": "data_generation", "definition_id": "cell_culture", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.99, "evidence": ["cell lines A172, U118, SW1088, and LN18 were cultured in Dulbecco’s modified Eagle medium (DMEM; Gibc", "serum (FBS; BI, Kibbutz, Israel). GSCs were cultured in DMEM/F-12 supplemented with 1 × B27 (Invitro"], "order_basis": "paper_text_order:3162", "id": "assay:5"}, {"role": "data_generation", "definition_id": "western_blot", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.93, "evidence": ["ncy of SERPINF1 in A172 and LN18 verified by Western blot; Figure S2: Cellular morphological images of"], "order_basis": "paper_text_order:5139", "id": "assay:6"}, {"role": "data_generation", "definition_id": "chip_seq", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.93, "evidence": ["nd LN18 after SERPINF1 knockdown; Figure S3: ChIP-seq data of the TFs in Cistrome Data Browser; Ta"], "order_basis": "paper_text_order:5248", "id": "assay:7"}, {"role": "analysis", "definition_id": "survival_analysis", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["logrank_test"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 0.8, "evidence": ["log-rank"], "order_basis": "consumes_earlier_output", "id": "assay:8"}]}