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pmid:37491357

Circ-NFKB1 sponges miR-203a-5p to regulate ERBB4 expression and promotes IL-1β induced chondrocytes apoptosis.

Zhao Wang · Hongwei Bao · Jingzhao Hou · Bin Ju · Yong Ji

Journal of orthopaedic surgery and research · 2023 doi:10.1186/s13018-023-03990-4

Paper

complete

Experiment

complete

Data

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Analysis

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absent

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title
Circ-NFKB1 sponges miR-203a-5p to regulate ERBB4 expression and promotes IL-1β induced chondrocytes apoptosis.
doi
10.1186/s13018-023-03990-4
pmid
37491357
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Zhao Wang
[1]
Hongwei Bao
[2]
Jingzhao Hou
[3]
Bin Ju
[4]
Yong Ji
journal
Journal of orthopaedic surgery and research
year
2023
abstract
BACKGROUND: Osteoarthritis (OA) is a chronic disease of the bones and joints that commonly affects middle-aged and elderly individuals, characterized by the degeneration of articular cartilage and inflammation of the joints. The molecular mechanisms of OA urgently need to be further examined. Our study intended to uncover circ-NFKB1/miR-203a-5p/ERBB4 axis in regulating interleukin-1β (IL-1β) induced chondrocytes apoptosis. METHODS: GSE178724, GSE79258 and GSE169077 were downloaded from Gene Expression Omibus (GEO) database and differentially expressed circRNAs, miRNAs and mRNAs were obtained by R software. Annexin V assay was used to determine cell apoptosis rate. ELISA was further performed to identify the inflammation response. Dual-luciferase reporter gene assay was conducted to examine the combination among circ-NFKB1, miR-203a-5p and ERBB4. RESULTS: Our research demonstrated that circ-NFKB1 and ERBB4 were significantly upregulated through bioinformatic analysis. MiR-203a-5p was significantly downregulated through bioinformatic analysis. Silencing of circ-NFKB1 notably inhibited the IL-1β induced chondrocytes apoptosis and upregulated ERBB4 expression. Through prediction on bioinformatics analysis, miR-203a-5p was the target binding circ-NFKB1, and ERBB4 was the potential target of miR-203a-5p. Subsequently, these changes induced by the silencing of circ-NFKB1 were reversed upon addition of pcDNA/ERBB4. CONCLUSIONS: Silencing circ-NFKB1 could sponge miR-203a-5p to regulate ERBB4 expression and alleviate OA progression.
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The microarray data was normalized using Bioconductor's fRMA package in R and subsequently differentially expressed circRNAs, miRNAs and mRNAs were analyzed with the R limma package. The mean comparison of multiple groups was carried out by one-way analysis of variance (ANOVA), while of two different groups was by independent-sample t-tests, performing all the statistical analysis with SPSS 20.0 (IBM Corp., Armonk, NY, USA), with P < 0.05 as a significant difference.
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The microarray data was normalized using Bioconductor's fRMA package in R and subsequently differentially expressed circRNAs, miRNAs and mRNAs were analyzed with the R limma package.
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Silencing circ-NFKB1 could sponge miR-203a-5p to regulate ERBB4 expression and alleviate OA progression.
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Silencing circ-NFKB1 could sponge miR-203a-5p to regulate ERBB4 expression and alleviate OA progression.
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sion and promotes IL-1β induced chondrocytes apoptosis.
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The molecular mechanisms of OA urgently need to be further examined. Our study intended to uncover circ-NFKB1/miR-203a-5p/ERBB4 axis in regulating interleukin-1β (IL-1β) induced chondrocytes apoptosis.\nMETHODS: GSE178724, GSE79258 and GSE169077 were downloaded from Gene Expression Omibus (GEO) database and differentially expressed circRNAs, miRNAs and mRNAs were obtained by R software. Annexin V assay was used to determine cell apoptosis rate. ELISA was further performed to identify the inflammation response. Dual-luciferase reporter gene assay was conducted to examine the combination among circ-NFKB1, miR-203a-5p and ERBB4.\nRESULTS: Our research demonstrated that circ-NFKB1 and ERBB4 were significantly upregulated through bioinformatic analysis. MiR-203a-5p was significantly downregulated through bioinformatic analysis. Silencing of circ-NFKB1 notably inhibited the IL-1β induced chondrocytes apoptosis and upregulated ERBB4 expression. Through prediction on bioinformatics analysis, miR-203a-5p was the target binding circ-NFKB1, and ERBB4 was the potential target of miR-203a-5p. Subsequently, these changes induced by the silencing of circ-NFKB1 were reversed upon addition of pcDNA/ERBB4.\nCONCLUSIONS: Silencing circ-NFKB1 could sponge miR-203a-5p to regulate ERBB4 expression and alleviate OA progression.", "claims": [{"id": "claim-method", "statement": "The microarray data was normalized using Bioconductor's fRMA package in R and subsequently differentially expressed circRNAs, miRNAs and mRNAs were analyzed with the R limma package. 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METHODS: GSE178724, GSE79258 and GSE169077", ". Annexin V assay was used to determine cell apoptosis rate. ELISA was further performed to identif", "bly inhibited the IL-1β induced chondrocytes apoptosis and upregulated ERBB4 expression. Through pr"], "order_basis": "paper_text_order:55", "id": "assay:1"}, {"role": "data_generation", "definition_id": "elisa", "definition_version": "99e1195c7d6f", "definition_digest": null, "required_operations": [], "support_state": "partial", "source_hashes": {"assay_lexicon": "99e1195c7d6f"}, "confidence": 0.93, "evidence": ["y was used to determine cell apoptosis rate. ELISA was further performed to identify the inflam"], "order_basis": "paper_text_order:739", "id": "assay:2"}, {"role": "analysis", "definition_id": "group_comparison", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["group_summary", "welch_t", "bootstrap_mean_difference", "group_comparison_anova"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["The microarray data was normalized using Bioconductor's fRMA package in R and subsequently differentially expressed circRNAs, miRNAs and mRNAs were analyzed with the R limma package. The mean comparison of multiple groups was carried out by one-way analysis of variance (ANOVA), while of two different groups was by independent-sample t-tests, performing all the statistical analysis with SPSS 20.0 (IBM Corp., Armonk, NY, USA), with P < 0.05 as a significant difference."], "order_basis": "consumes_earlier_output", "id": "assay:3"}]}