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pmid:37771573

A 3D printed plastic frame deeply impacts yeast cell growth.

Esther Molina-Menor · Àngela Vidal-Verdú · Carlos Gomis-Olcina · Juli Peretó · Manuel Porcar

Frontiers in bioengineering and biotechnology · 2023 doi:10.3389/fbioe.2023.1250667

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complete

Experiment

complete

Data

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Analysis

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Execution

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A 3D printed plastic frame deeply impacts yeast cell growth.
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Esther Molina-Menor
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Àngela Vidal-Verdú
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Carlos Gomis-Olcina
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Juli Peretó
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Manuel Porcar
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Frontiers in bioengineering and biotechnology
year
2023
abstract
Solid State Fermentation (SSF) processes have been explored for yeast growth and protein and metabolites production. However, most of these processes lack standardization. In this work, we present a polylactic acid (PLA) 3D printed matrix that dramatically enhances yeast growth when embedded in liquid media compared to equivalent static cultures, and changes yeast expression patterns at the proteome level (data are available via ProteomeXchange with identifier PXD043759). Moreover, differences in sugar assimilation and ethanol production, as the main product of alcoholic fermentation, are observed. Our results suggest that these matrixes may be useful for a vast range of biotechnological applications based on yeast fermentation.
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One-way ANOVA followed by Tukey’s multiple comparisons test was performed using GraphPad Prism version 9.0.0 for macOS, GraphPad Software, San Diego, California United States, www.graphpad.com, for both OD600 and metabolite measurements. Alcoholic fermentation and oxidative stress protein levels were analyzed through T-test and p-values were corrected by Benjamini-Hochberg/FDR method. Significance level of 0.05 was set.
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No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": ["group_summary", "welch_t", "bootstrap_mean_difference", "group_comparison_anova"], "assets": ["source:pmid:37771573", "data:geo:PXD043759"], "steps": ["run_analysis"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:PXD043759"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-11-01T18:54:48Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": "verbatim"}, "calls": 5, "usage": {"prompt_tokens": 9852, "completion_tokens": 2178, "cached_tokens": 264}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:37771573", "type": "paper", "label": "pmid:37771573"}, {"id": "source:pmid:37771573", "type": "manuscript", "label": "PMID 37771573 full text"}, {"id": "data:geo:PXD043759", "type": "dataset", "label": "GEO PXD043759"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:37771573", "type": "paper", "label": "pmid:37771573"}, {"id": "source:pmid:37771573", "type": "manuscript", "label": "PMID 37771573 full text"}, {"id": "data:geo:PXD043759", "type": "dataset", "label": "GEO PXD043759"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-37771573", "type": "extraction", "used": ["source:pmid:37771573"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-PXD043759", "type": "accession_resolution", "used": ["data:geo:PXD043759"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:37771573", "parent_hash": "sha256:50b83e68e1ea993ee56d9432b431d9c4b16454131d307b12a0f531c990775cda", "fork_of": null, "generation": 4}, "gaps": ["asset:data:geo:PXD043759 licence not read", "asset:data:geo:PXD043759 not downloaded", "execution.not_run", "review.human_critique", "review.independent_reader", "review.machine_critique"], "assays": [{"role": "analysis", "definition_id": "group_comparison", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["group_summary", "welch_t", "bootstrap_mean_difference", "group_comparison_anova"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["One-way ANOVA followed by Tukey’s multiple comparisons test was performed using GraphPad Prism version 9.0.0 for macOS, GraphPad Software, San Diego, California United States, www.graphpad.com, for both OD600 and metabolite measurements. Alcoholic fermentation and oxidative stress protein levels were analyzed through T-test and p-values were corrected by Benjamini-Hochberg/FDR method. Significance level of 0.05 was set."], "order_basis": "analysis_only", "id": "assay:1"}]}