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pmid:37927958

CXCL10 May Be Responsible for Susceptibility to Pulmonary Embolism in COVID-19 Patients.

Yingli Liu · Dan Si · Pingping Bai · Li Zhu · Lili Zhang · Qi Chen · Yong Qi

Journal of inflammation research · 2023 doi:10.2147/JIR.S431212

Paper

complete

Experiment

complete

Data

partial

Analysis

partial

Execution

absent

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Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
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pmid:37927958
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science-record
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2026-11-01T19:02:49Z
updated_at
2026-11-01T22:10:35Z
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paper object · 10 fields
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title
CXCL10 May Be Responsible for Susceptibility to Pulmonary Embolism in COVID-19 Patients.
doi
10.2147/JIR.S431212
pmid
37927958
authors array · 7 items
[0]
Yingli Liu
[1]
Dan Si
[2]
Pingping Bai
[3]
Li Zhu
[4]
Lili Zhang
[5]
Qi Chen
[6]
Yong Qi
journal
Journal of inflammation research
year
2023
abstract
Background: Although the potential of coronavirus disease 2019 (COVID-19) patients to develop pulmonary embolism (PE) is widely recognized, the underlying mechanism has not been completely elucidated. This study aimed to identify genes common to COVID-19 and PE to reveal the underlying pathogenesis of susceptibility to PE in COVID-19 patients. Methods: COVID-19 genes were obtained from the GEO database and the OMIM, CTD, GeneCards, and DisGeNET databases; PE genes were obtained from the OMIM, CTD, GeneCards, and DisGeNET databases. We overlapped the genes of COVID-19 and PE to obtain common genes for additional analysis, including functional enrichment, protein-protein interaction, and immune infiltration analysis. Hub genes were identified using cytoHubba, a plugin of Cytoscape, and validated using the independent datasets GSE167000 and GSE13535. The genes validated by the above datasets were further validated in clinical samples. Results: We obtained 36 genes shared by PE and COVID-19. Functional enrichment and immune infiltration analyses revealed the involvement of cytokines and immune activation. Five genes (CCL2, CXCL10, ALB, EGF, and MKI67) were identified as hub genes common to COVID-19 and PE. CXCL10 was validated in both independent datasets (GSE167000 and GSE13535). Serum levels of CXCL10 in the COVID-19 group and the COVID-19 combined with PE group were significantly higher than those in the healthy control group (P<0.001). In addition, there were significant differences between the COVID-19 group and the COVID-19 combined with PE group (P<0.01). Conclusion: Our study reveals common genes shared by PE and COVID-19 and identifies CXCL10 as a possible cause of susceptibility to PE in COVID-19 patients.
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Differences between the two groups were compared by an unpaired Student′s t-test. A two-tailed p-value < 0.05 was considered statistically significant.
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Differences between the two groups were compared by an unpaired Student′s t-test. A two-tailed p-value < 0.05 was considered statistically significant.
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Serum levels of CXCL10 in the COVID-19 group and the COVID-19 combined with PE group were significantly higher than those in the healthy control group (P<0.001).
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Serum levels of CXCL10 in the COVID-19 group and the COVID-19 combined with PE group were significantly higher than those in the healthy control group (P<0.001).
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Serum levels of CXCL10 in the COVID-19 group and the COVID-19 combined with PE group were significantly higher than those in the healthy control group (P<0.001).
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Serum levels of CXCL10 in the COVID-19 group and the COVID-19 combined with PE group were significantly higher than those in the healthy control group (P<0.001).
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Rat lung gene expression during acute pulmonary embolism
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Homo sapiens
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Large-scale Multi-omic Analysis of COVID-19 Severity
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GEO GSE13535
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agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-37927958
type
extraction
used array · 1 item
[0]
source:pmid:37927958
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE13535
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE13535
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:37927958
parent_hash
sha256:6dc8ccd0c6cc05cd7d6f93ec50165c080a93f2b8cf0098b1cf9e8ca3c5a78993
fork_of
null
gaps array · 11 items
[0]
asset:data:geo:GSE13535 licence not read
[1]
asset:data:geo:GSE13535 not downloaded
[2]
asset:data:geo:GSE157103 licence not read
[3]
asset:data:geo:GSE157103 not downloaded
[4]
asset:data:geo:GSE167000 licence not read
[5]
asset:data:geo:GSE167000 not downloaded
[6]
execution.not_run
[7]
method.reader_named_unmapped
[8]
review.human_critique
[9]
review.independent_reader
[10]
review.machine_critique
assays array · 2 items
[0] object · 11 fields
role
data_generation
definition_version
99e1195c7d6f
required_operations array · 0 items
support_state
partial
source_hashes object · 1 field
assay_lexicon
99e1195c7d6f
confidence
0.93
evidence array · 1 item
[0]
CXCL10 in serum were measured using a human ELISA kit (Elabscience, Wuhan, China). This study
order_basis
paper_text_order:2567
id
assay:1
[1] object · 11 fields
role
analysis
definition_id
network_analysis
definition_version
f2132e96ae6c7a4e
required_operations array · 3 items
[0]
build_graph
[1]
centrality_scores
[2]
pathway_enrich
support_state
supported
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
protein-protein interaction
order_basis
consumes_earlier_output
id
assay:2
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:37927958", "kind": "science-record", "revision": 4, "content_hash": "sha256:805c2d9dd0689a83be4c0140fef742819b635be2b9f4dbf570515b235e5512f0", "created_at": "2026-11-01T19:02:49Z", "updated_at": "2026-11-01T22:10:35Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "CXCL10 May Be Responsible for Susceptibility to Pulmonary Embolism in COVID-19 Patients.", "doi": "10.2147/JIR.S431212", "pmid": "37927958", "authors": ["Yingli Liu", "Dan Si", "Pingping Bai", "Li Zhu", "Lili Zhang", "Qi Chen", "Yong Qi"], "journal": "Journal of inflammation research", "year": 2023, "abstract": "Background: Although the potential of coronavirus disease 2019 (COVID-19) patients to develop pulmonary embolism (PE) is widely recognized, the underlying mechanism has not been completely elucidated. This study aimed to identify genes common to COVID-19 and PE to reveal the underlying pathogenesis of susceptibility to PE in COVID-19 patients.\nMethods: COVID-19 genes were obtained from the GEO database and the OMIM, CTD, GeneCards, and DisGeNET databases; PE genes were obtained from the OMIM, CTD, GeneCards, and DisGeNET databases. We overlapped the genes of COVID-19 and PE to obtain common genes for additional analysis, including functional enrichment, protein-protein interaction, and immune infiltration analysis. Hub genes were identified using cytoHubba, a plugin of Cytoscape, and validated using the independent datasets GSE167000 and GSE13535. The genes validated by the above datasets were further validated in clinical samples.\nResults: We obtained 36 genes shared by PE and COVID-19. Functional enrichment and immune infiltration analyses revealed the involvement of cytokines and immune activation. Five genes (CCL2, CXCL10, ALB, EGF, and MKI67) were identified as hub genes common to COVID-19 and PE. CXCL10 was validated in both independent datasets (GSE167000 and GSE13535). Serum levels of CXCL10 in the COVID-19 group and the COVID-19 combined with PE group were significantly higher than those in the healthy control group (P<0.001). In addition, there were significant differences between the COVID-19 group and the COVID-19 combined with PE group (P<0.01).\nConclusion: Our study reveals common genes shared by PE and COVID-19 and identifies CXCL10 as a possible cause of susceptibility to PE in COVID-19 patients.", "claims": [{"id": "claim-method", "statement": "Differences between the two groups were compared by an unpaired Student′s t-test. A two-tailed p-value < 0.05 was considered statistically significant.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:37927958", "locator": "sections[9] \"Statistical Analysis\" paragraph 2", "quote": "Differences between the two groups were compared by an unpaired Student′s t-test. A two-tailed p-value < 0.05 was considered statistically significant."}], "state": "complete"}, {"id": "claim-data-access", "statement": "We provide details of the materials and methods in our manuscript.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:37927958", "locator": "sections[23] \"Data Sharing Statement\" paragraph 2", "quote": "We provide details of the materials and methods in our manuscript."}], "state": "complete"}, {"id": "claim-target-result", "statement": "Serum levels of CXCL10 in the COVID-19 group and the COVID-19 combined with PE group were significantly higher than those in the healthy control group (P<0.001).", "kind": "quantitative", "target": {"value": 0.001, "unit": "p-value", "tolerance": null, "source": "Serum levels of CXCL10 in the COVID-19 group and the COVID-19 combined with PE group were significantly higher than those in the healthy control group (P<0.001)."}, "evidence": [{"asset": "source:pmid:37927958", "locator": "sections[0] \"Abstract\" paragraph 3", "quote": "Serum levels of CXCL10 in the COVID-19 group and the COVID-19 combined with PE group were significantly higher than those in the healthy control group (P<0.001)."}], "state": "complete"}], "gaps": []}, "experiment": {"state": "complete", "objective": "Serum levels of CXCL10 in the COVID-19 group and the COVID-19 combined with PE group were significantly higher than those in the healthy control group (P<0.001).", "steps": [{"id": "read_published_estimate", "order": 1, "name": "Read the published estimate from the source", "kind": "other", "state": "complete", "blocked_on": null, "description": "The claim, method and evidence span published with the source article.", "duration_hours": null, "parameters": {}, "inputs": ["source:pmid:37927958"], "outputs": ["the published estimate and its evidence"], "instruments": [], "reagents": []}, {"id": "obtain_source_data", "order": 2, "name": "Obtain the source data from the named repository", "kind": "data-preparation", "state": "complete", "blocked_on": null, "description": "The GEO series accession resolves and its sample accessions are listed. This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE13535"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE13535"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:37927958", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.2147/JIR.S431212", "sha256": "sha256:8b2554a47b3788a2bdc99e06408da500a287f5e6a5646b110124e3d196a4e0ae", "bytes": 33289, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "10.2147/JIR.S431212", "version": null, "note": "Full article fetched from PMC; the checksum covers the rendered section body, not the original XML bytes.", "structure": {"pmcid": "PMC10625331", "source": "europe_pmc_fulltext", "coverage": "whole_body", "text_hash_scope": "rendered_section_body"}}, {"id": "data:geo:GSE13535", "role": "raw", "format": "geo-series", "media_type": "application/vnd.ncbi.geo-series+json", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13535", "sha256": null, "bytes": null, "access": "open", "state": "resolved", "reader": null, "reader_status": "reader_required", "identifier": "GSE13535", "version": null, "note": "We provide details of the materials and methods in our manuscript.", "structure": {"repository": "GEO", "access_route": "GEO accession 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"identifier_resolution_only_no_download_no_licence_read", "downloaded": false, "licence_read": false}}], "gaps": ["asset:data:geo:GSE13535 not downloaded", "asset:data:geo:GSE13535 licence not read", "asset:data:geo:GSE157103 not downloaded", "asset:data:geo:GSE157103 licence not read", "asset:data:geo:GSE167000 not downloaded", "asset:data:geo:GSE167000 licence not read"]}, "analysis": {"state": "partial", "methods": [{"id": "method-1", "family": "network_analysis", "specific": "ppi_network", "label": "Network / pathway analysis", "dsl_operations": ["build_graph", "centrality_scores", "pathway_enrich"], "missing_operations": [], "expressible": true, "parameters": {}, "data_shapes": ["edge_list"], "evidence": {"score": 0.7, "band": "medium", "quote": "protein-protein interaction"}}, {"id": "method-2", "family": null, "specific": null, "label": "unpaired Student′s t-test", "dsl_operations": [], "missing_operations": [], "expressible": null, "parameters": {}, "data_shapes": [], 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This study"], "order_basis": "paper_text_order:2567", "id": "assay:1"}, {"role": "analysis", "definition_id": "network_analysis", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["build_graph", "centrality_scores", "pathway_enrich"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 0.7, "evidence": ["protein-protein interaction"], "order_basis": "consumes_earlier_output", "id": "assay:2"}]}