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pmid:38398074

Increased PIEZO1 Expression Is Associated with Worse Clinical Outcomes in Hormone-Receptor-Negative Breast Cancer Patients.

Rylee Ann Poole · Qingfei Wang · Alo Ray · Kazuaki Takabe · Mateusz Opyrchal · Eriko Katsuta

Cancers · 2024 doi:10.3390/cancers16040683

Paper

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title
Increased PIEZO1 Expression Is Associated with Worse Clinical Outcomes in Hormone-Receptor-Negative Breast Cancer Patients.
doi
10.3390/cancers16040683
pmid
38398074
authors array · 6 items
[0]
Rylee Ann Poole
[1]
Qingfei Wang
[2]
Alo Ray
[3]
Kazuaki Takabe
[4]
Mateusz Opyrchal
[5]
Eriko Katsuta
journal
Cancers
year
2024
abstract
PIEZO1 plays a crucial role in the human body as a mechanosensory ion channel. It has been demonstrated that PIEZO1 is important in tissue development and regulating many essential physiological processes. Studies have suggested that the PIEZO1 ion channel plays a role in invasion and progression in cancer; elevated levels of PIEZO1 have been correlated with increased migration in breast cancer cells, chemo-resistance and invasion in gastric cancer cells, and increased invasion of osteosarcoma cells. In addition, high PIEZO1 expression levels were correlated with a worse prognosis in glioma patients. On the other hand, studies in lung cancer have attributed high PIEZO1 levels to better patient outcomes. However, the clinical impact of PIEZO1 in breast cancer is not well characterized. Therefore, our goal was to determine the clinical relevance of PIEZO1 in breast cancer. An analysis of breast cancer data from The Cancer Genome Atlas (TCGA) was conducted to investigate PIEZO1 expression levels and correlation to survival, followed by validation in an independent dataset, GSE3494. We also performed gene set enrichment analysis (GSEA) and pathway enrichment analysis. We also analyzed the immune cell composition in breast tumors from TCGA through a CIBERSORT algorithm. Our results demonstrated that the PIEZO1 expression levels are higher in hormone-receptor (HR)-negative than in HR-positive cohorts. High PIEZO1 expression is correlated with a significant decrease in survival in HR-negative cohorts, especially in triple-negative breast cancer (TNBC), suggesting that PIEZO1 could be utilized as a prognostic biomarker in HR-negative breast cancer. GSEA showed that various signaling pathways associated with more invasive phenotypes and resistance to treatments, including epithelial-mesenchymal transition (EMT), hypoxia, and multiple signaling pathways, are enriched in high-PIEZO1 HR-negative tumors. Our results also demonstrated a decrease in CD8+ and CD4+ T cell infiltration in high-PIEZO1 HR-negative tumors. Further investigations are necessary to elucidate the mechanistic roles of PIEZO1 in HR-negative breast cancer.
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Survival analysis was conducted by Kaplan–Meier curve with log-rank test.
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Our results show that PIEZO1 expression is higher in hormone-receptor (HR)-negative cohorts than HR-positive cohorts.
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[154]
GSM508166
[155]
GSM508167
[156]
GSM508168
[157]
GSM508169
[158]
GSM508170
[159]
GSM508171
[160]
GSM508172
[161]
GSM508173
[162]
GSM508174
[163]
GSM508175
[164]
GSM508176
[165]
GSM508177
[166]
GSM508178
[167]
GSM508179
[168]
GSM508180
[169]
GSM508181
[170]
GSM508182
[171]
GSM508183
[172]
GSM508184
[173]
GSM508185
[174]
GSM508186
[175]
GSM508187
[176]
GSM508188
[177]
GSM508189
sample_count
178
group_sizes
null
group_sizes_basis
null
platform
96
taxon
Homo sapiens
title
Expression data from breast cancer FNA biopsies from patients
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[3] object · 15 fields
id
data:geo:GSE25006
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25006
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE25006
version
null
note
TCGA provisional database was downloaded through cBioportal (http://www.cbioportal.org/, accessed on 1 December 2020) and GSE3494, GSE20271, GSE20194, and GSE25066 were downloaded through Gene Expression Omnibus (GEO; https://www.ncbi.nlm.nih.gov/geo/, accessed on 1 December 2020).
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
TCGA provisional database was downloaded through cBioportal (http://www.cbioportal.org/, accessed on 1 December 2020) and GSE3494, GSE20271, GSE20194, and GSE25066 were downloaded through Gene Expression Omnibus (GEO; https://www.ncbi.nlm.nih.gov/geo/, accessed on 1 December 2020).
access_statement_kind
data_availability_statement
sample_accessions array · 2 items
[0]
GSM826753
[1]
GSM826754
sample_count
2
group_sizes
null
group_sizes_basis
null
platform
8531
taxon
Mus musculus
title
Mouse heart tissue: wild-type vs. aMHC-Calcineurin transgenic (CnTg)
resolution_checked_at
2026-11-01T20:16:08Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[4] object · 15 fields
id
data:geo:GSE25066
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25066
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE25066
version
null
note
TCGA provisional database was downloaded through cBioportal (http://www.cbioportal.org/, accessed on 1 December 2020) and GSE3494, GSE20271, GSE20194, and GSE25066 were downloaded through Gene Expression Omnibus (GEO; https://www.ncbi.nlm.nih.gov/geo/, accessed on 1 December 2020).
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
TCGA provisional database was downloaded through cBioportal (http://www.cbioportal.org/, accessed on 1 December 2020) and GSE3494, GSE20271, GSE20194, and GSE25066 were downloaded through Gene Expression Omnibus (GEO; https://www.ncbi.nlm.nih.gov/geo/, accessed on 1 December 2020).
access_statement_kind
data_availability_statement
sample_accessions array · 508 items
[0]
GSM615096
[1]
GSM615097
[2]
GSM615098
[3]
GSM615099
[4]
GSM615100
[5]
GSM615101
[6]
GSM615102
[7]
GSM615103
[8]
GSM615104
[9]
GSM615105
[10]
GSM615106
[11]
GSM615107
[12]
GSM615108
[13]
GSM615109
[14]
GSM615110
[15]
GSM615111
[16]
GSM615112
[17]
GSM615113
[18]
GSM615114
[19]
GSM615115
[20]
GSM615116
[21]
GSM615117
[22]
GSM615118
[23]
GSM615119
[24]
GSM615120
[25]
GSM615121
[26]
GSM615122
[27]
GSM615123
[28]
GSM615124
[29]
GSM615125
[30]
GSM615126
[31]
GSM615127
[32]
GSM615128
[33]
GSM615129
[34]
GSM615130
[35]
GSM615131
[36]
GSM615132
[37]
GSM615133
[38]
GSM615134
[39]
GSM615135
[40]
GSM615136
[41]
GSM615137
[42]
GSM615138
[43]
GSM615139
[44]
GSM615140
[45]
GSM615141
[46]
GSM615142
[47]
GSM615143
[48]
GSM615144
[49]
GSM615145
[50]
GSM615146
[51]
GSM615147
[52]
GSM615148
[53]
GSM615149
[54]
GSM615150
[55]
GSM615151
[56]
GSM615152
[57]
GSM615153
[58]
GSM615154
[59]
GSM615155
[60]
GSM615156
[61]
GSM615157
[62]
GSM615158
[63]
GSM615159
[64]
GSM615160
[65]
GSM615161
[66]
GSM615162
[67]
GSM615163
[68]
GSM615164
[69]
GSM615165
[70]
GSM615166
[71]
GSM615167
[72]
GSM615168
[73]
GSM615169
[74]
GSM615170
[75]
GSM615171
[76]
GSM615172
[77]
GSM615173
[78]
GSM615174
[79]
GSM615175
[80]
GSM615176
[81]
GSM615177
[82]
GSM615178
[83]
GSM615179
[84]
GSM615180
[85]
GSM615181
[86]
GSM615182
[87]
GSM615183
[88]
GSM615184
[89]
GSM615185
[90]
GSM615186
[91]
GSM615187
[92]
GSM615188
[93]
GSM615189
[94]
GSM615190
[95]
GSM615191
[96]
GSM615192
[97]
GSM615193
[98]
GSM615194
[99]
GSM615195
[100]
GSM615196
[101]
GSM615197
[102]
GSM615198
[103]
GSM615199
[104]
GSM615200
[105]
GSM615201
[106]
GSM615202
[107]
GSM615203
[108]
GSM615204
[109]
GSM615205
[110]
GSM615206
[111]
GSM615207
[112]
GSM615208
[113]
GSM615209
[114]
GSM615210
[115]
GSM615211
[116]
GSM615212
[117]
GSM615213
[118]
GSM615214
[119]
GSM615215
[120]
GSM615216
[121]
GSM615217
[122]
GSM615218
[123]
GSM615219
[124]
GSM615220
[125]
GSM615221
[126]
GSM615222
[127]
GSM615223
[128]
GSM615224
[129]
GSM615225
[130]
GSM615226
[131]
GSM615227
[132]
GSM615228
[133]
GSM615229
[134]
GSM615230
[135]
GSM615231
[136]
GSM615232
[137]
GSM615233
[138]
GSM615234
[139]
GSM615235
[140]
GSM615236
[141]
GSM615237
[142]
GSM615238
[143]
GSM615239
[144]
GSM615240
[145]
GSM615241
[146]
GSM615242
[147]
GSM615243
[148]
GSM615244
[149]
GSM615245
[150]
GSM615246
[151]
GSM615247
[152]
GSM615248
[153]
GSM615249
[154]
GSM615250
[155]
GSM615251
[156]
GSM615252
[157]
GSM615253
[158]
GSM615254
[159]
GSM615255
[160]
GSM615256
[161]
GSM615257
[162]
GSM615258
[163]
GSM615259
[164]
GSM615260
[165]
GSM615261
[166]
GSM615262
[167]
GSM615263
[168]
GSM615264
[169]
GSM615265
[170]
GSM615266
[171]
GSM615267
[172]
GSM615268
[173]
GSM615269
[174]
GSM615270
[175]
GSM615271
[176]
GSM615272
[177]
GSM615273
[178]
GSM615274
[179]
GSM615275
[180]
GSM615276
[181]
GSM615277
[182]
GSM615278
[183]
GSM615279
[184]
GSM615280
[185]
GSM615281
[186]
GSM615282
[187]
GSM615283
[188]
GSM615284
[189]
GSM615285
[190]
GSM615286
[191]
GSM615287
[192]
GSM615288
[193]
GSM615289
[194]
GSM615290
[195]
GSM615291
[196]
GSM615292
[197]
GSM615293
[198]
GSM615294
[199]
GSM615295
[200]
GSM615296
[201]
GSM615297
[202]
GSM615298
[203]
GSM615299
[204]
GSM615300
[205]
GSM615301
[206]
GSM615302
[207]
GSM615303
[208]
GSM615304
[209]
GSM615305
[210]
GSM615306
[211]
GSM615307
[212]
GSM615308
[213]
GSM615309
[214]
GSM615310
[215]
GSM615311
[216]
GSM615312
[217]
GSM615313
[218]
GSM615314
[219]
GSM615315
[220]
GSM615316
[221]
GSM615317
[222]
GSM615318
[223]
GSM615319
[224]
GSM615320
[225]
GSM615321
[226]
GSM615322
[227]
GSM615323
[228]
GSM615324
[229]
GSM615325
[230]
GSM615326
[231]
GSM615327
[232]
GSM615328
[233]
GSM615329
[234]
GSM615330
[235]
GSM615331
[236]
GSM615332
[237]
GSM615333
[238]
GSM615334
[239]
GSM615335
[240]
GSM615336
[241]
GSM615337
[242]
GSM615338
[243]
GSM615339
[244]
GSM615340
[245]
GSM615341
[246]
GSM615342
[247]
GSM615343
[248]
GSM615344
[249]
GSM615345
[250]
GSM615346
[251]
GSM615347
[252]
GSM615348
[253]
GSM615349
[254]
GSM615350
[255]
GSM615351
[256]
GSM615352
[257]
GSM615353
[258]
GSM615354
[259]
GSM615355
[260]
GSM615356
[261]
GSM615357
[262]
GSM615358
[263]
GSM615359
[264]
GSM615360
[265]
GSM615361
[266]
GSM615362
[267]
GSM615363
[268]
GSM615364
[269]
GSM615365
[270]
GSM615366
[271]
GSM615367
[272]
GSM615368
[273]
GSM615369
[274]
GSM615370
[275]
GSM615371
[276]
GSM615372
[277]
GSM615373
[278]
GSM615374
[279]
GSM615375
[280]
GSM615376
[281]
GSM615377
[282]
GSM615378
[283]
GSM615379
[284]
GSM615380
[285]
GSM615381
[286]
GSM615382
[287]
GSM615383
[288]
GSM615384
[289]
GSM615385
[290]
GSM615386
[291]
GSM615387
[292]
GSM615388
[293]
GSM615389
[294]
GSM615390
[295]
GSM615391
[296]
GSM615392
[297]
GSM615393
[298]
GSM615394
[299]
GSM615395
[300]
GSM615396
[301]
GSM615397
[302]
GSM615398
[303]
GSM615399
[304]
GSM615400
[305]
GSM615401
[306]
GSM615402
[307]
GSM615403
[308]
GSM615404
[309]
GSM615405
[310]
GSM615631
[311]
GSM615632
[312]
GSM615633
[313]
GSM615634
[314]
GSM615635
[315]
GSM615636
[316]
GSM615637
[317]
GSM615638
[318]
GSM615639
[319]
GSM615640
[320]
GSM615641
[321]
GSM615642
[322]
GSM615643
[323]
GSM615644
[324]
GSM615645
[325]
GSM615646
[326]
GSM615647
[327]
GSM615648
[328]
GSM615649
[329]
GSM615650
[330]
GSM615651
[331]
GSM615652
[332]
GSM615653
[333]
GSM615654
[334]
GSM615655
[335]
GSM615656
[336]
GSM615657
[337]
GSM615658
[338]
GSM615659
[339]
GSM615660
[340]
GSM615661
[341]
GSM615662
[342]
GSM615663
[343]
GSM615664
[344]
GSM615665
[345]
GSM615666
[346]
GSM615667
[347]
GSM615668
[348]
GSM615669
[349]
GSM615670
[350]
GSM615671
[351]
GSM615672
[352]
GSM615673
[353]
GSM615674
[354]
GSM615675
[355]
GSM615676
[356]
GSM615677
[357]
GSM615678
[358]
GSM615679
[359]
GSM615680
[360]
GSM615681
[361]
GSM615682
[362]
GSM615683
[363]
GSM615684
[364]
GSM615685
[365]
GSM615686
[366]
GSM615687
[367]
GSM615688
[368]
GSM615689
[369]
GSM615690
[370]
GSM615691
[371]
GSM615692
[372]
GSM615693
[373]
GSM615694
[374]
GSM615695
[375]
GSM615696
[376]
GSM615697
[377]
GSM615698
[378]
GSM615699
[379]
GSM615700
[380]
GSM615701
[381]
GSM615702
[382]
GSM615703
[383]
GSM615704
[384]
GSM615705
[385]
GSM615706
[386]
GSM615707
[387]
GSM615708
[388]
GSM615709
[389]
GSM615710
[390]
GSM615711
[391]
GSM615712
[392]
GSM615713
[393]
GSM615714
[394]
GSM615715
[395]
GSM615716
[396]
GSM615717
[397]
GSM615718
[398]
GSM615719
[399]
GSM615720
[400]
GSM615721
[401]
GSM615722
[402]
GSM615723
[403]
GSM615724
[404]
GSM615725
[405]
GSM615726
[406]
GSM615727
[407]
GSM615728
[408]
GSM615729
[409]
GSM615730
[410]
GSM615731
[411]
GSM615732
[412]
GSM615733
[413]
GSM615734
[414]
GSM615735
[415]
GSM615736
[416]
GSM615737
[417]
GSM615738
[418]
GSM615739
[419]
GSM615740
[420]
GSM615741
[421]
GSM615742
[422]
GSM615743
[423]
GSM615744
[424]
GSM615745
[425]
GSM615746
[426]
GSM615747
[427]
GSM615748
[428]
GSM615749
[429]
GSM615750
[430]
GSM615751
[431]
GSM615752
[432]
GSM615753
[433]
GSM615754
[434]
GSM615755
[435]
GSM615756
[436]
GSM615757
[437]
GSM615758
[438]
GSM615759
[439]
GSM615760
[440]
GSM615761
[441]
GSM615762
[442]
GSM615763
[443]
GSM615764
[444]
GSM615765
[445]
GSM615766
[446]
GSM615767
[447]
GSM615768
[448]
GSM615769
[449]
GSM615770
[450]
GSM615771
[451]
GSM615772
[452]
GSM615773
[453]
GSM615774
[454]
GSM615775
[455]
GSM615776
[456]
GSM615777
[457]
GSM615778
[458]
GSM615779
[459]
GSM615780
[460]
GSM615781
[461]
GSM615782
[462]
GSM615783
[463]
GSM615784
[464]
GSM615785
[465]
GSM615786
[466]
GSM615787
[467]
GSM615788
[468]
GSM615789
[469]
GSM615790
[470]
GSM615791
[471]
GSM615792
[472]
GSM615793
[473]
GSM615794
[474]
GSM615795
[475]
GSM615796
[476]
GSM615797
[477]
GSM615798
[478]
GSM615799
[479]
GSM615800
[480]
GSM615801
[481]
GSM615802
[482]
GSM615803
[483]
GSM615804
[484]
GSM615805
[485]
GSM615806
[486]
GSM615807
[487]
GSM615808
[488]
GSM615809
[489]
GSM615810
[490]
GSM615811
[491]
GSM615812
[492]
GSM615813
[493]
GSM615814
[494]
GSM615815
[495]
GSM615816
[496]
GSM615817
[497]
GSM615818
[498]
GSM615819
[499]
GSM615820
[500]
GSM615821
[501]
GSM615822
[502]
GSM615823
[503]
GSM615824
[504]
GSM615825
[505]
GSM615826
[506]
GSM615827
[507]
GSM615828
sample_count
508
group_sizes
null
group_sizes_basis
null
platform
96
taxon
Homo sapiens
title
Genomic predictor of response and survival following neoadjuvant taxane-anthracycline chemotherapy in breast cancer
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
[5] object · 15 fields
id
data:geo:GSE3494
role
raw
format
geo-series
media_type
application/vnd.ncbi.geo-series+json
uri
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE3494
sha256
null
bytes
null
access
open
state
resolved
reader
null
reader_status
reader_required
identifier
GSE3494
version
null
note
TCGA provisional database was downloaded through cBioportal (http://www.cbioportal.org/, accessed on 1 December 2020) and GSE3494, GSE20271, GSE20194, and GSE25066 were downloaded through Gene Expression Omnibus (GEO; https://www.ncbi.nlm.nih.gov/geo/, accessed on 1 December 2020).
structure object · 15 fields
repository
GEO
access_route
GEO accession URL
access_statement_verbatim
TCGA provisional database was downloaded through cBioportal (http://www.cbioportal.org/, accessed on 1 December 2020) and GSE3494, GSE20271, GSE20194, and GSE25066 were downloaded through Gene Expression Omnibus (GEO; https://www.ncbi.nlm.nih.gov/geo/, accessed on 1 December 2020).
access_statement_kind
data_availability_statement
sample_accessions array · 502 items
[0]
GSM79114
[1]
GSM79115
[2]
GSM79116
[3]
GSM79117
[4]
GSM79118
[5]
GSM79119
[6]
GSM79120
[7]
GSM79121
[8]
GSM79122
[9]
GSM79123
[10]
GSM79124
[11]
GSM79125
[12]
GSM79126
[13]
GSM79127
[14]
GSM79128
[15]
GSM79129
[16]
GSM79130
[17]
GSM79131
[18]
GSM79132
[19]
GSM79133
[20]
GSM79134
[21]
GSM79135
[22]
GSM79136
[23]
GSM79137
[24]
GSM79138
[25]
GSM79139
[26]
GSM79140
[27]
GSM79141
[28]
GSM79142
[29]
GSM79143
[30]
GSM79144
[31]
GSM79145
[32]
GSM79146
[33]
GSM79147
[34]
GSM79148
[35]
GSM79149
[36]
GSM79150
[37]
GSM79151
[38]
GSM79152
[39]
GSM79153
[40]
GSM79154
[41]
GSM79155
[42]
GSM79156
[43]
GSM79157
[44]
GSM79158
[45]
GSM79159
[46]
GSM79160
[47]
GSM79161
[48]
GSM79162
[49]
GSM79163
[50]
GSM79164
[51]
GSM79165
[52]
GSM79166
[53]
GSM79167
[54]
GSM79168
[55]
GSM79169
[56]
GSM79170
[57]
GSM79171
[58]
GSM79172
[59]
GSM79173
[60]
GSM79174
[61]
GSM79175
[62]
GSM79176
[63]
GSM79177
[64]
GSM79178
[65]
GSM79179
[66]
GSM79180
[67]
GSM79181
[68]
GSM79182
[69]
GSM79183
[70]
GSM79184
[71]
GSM79185
[72]
GSM79186
[73]
GSM79187
[74]
GSM79188
[75]
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[76]
GSM79190
[77]
GSM79191
[78]
GSM79192
[79]
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[80]
GSM79194
[81]
GSM79195
[82]
GSM79196
[83]
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[84]
GSM79198
[85]
GSM79199
[86]
GSM79200
[87]
GSM79201
[88]
GSM79202
[89]
GSM79203
[90]
GSM79204
[91]
GSM79205
[92]
GSM79206
[93]
GSM79207
[94]
GSM79208
[95]
GSM79209
[96]
GSM79210
[97]
GSM79211
[98]
GSM79212
[99]
GSM79213
[100]
GSM79214
[101]
GSM79215
[102]
GSM79216
[103]
GSM79217
[104]
GSM79218
[105]
GSM79219
[106]
GSM79220
[107]
GSM79221
[108]
GSM79222
[109]
GSM79223
[110]
GSM79224
[111]
GSM79225
[112]
GSM79226
[113]
GSM79227
[114]
GSM79228
[115]
GSM79229
[116]
GSM79230
[117]
GSM79231
[118]
GSM79232
[119]
GSM79233
[120]
GSM79234
[121]
GSM79235
[122]
GSM79236
[123]
GSM79237
[124]
GSM79238
[125]
GSM79239
[126]
GSM79240
[127]
GSM79241
[128]
GSM79242
[129]
GSM79243
[130]
GSM79244
[131]
GSM79245
[132]
GSM79246
[133]
GSM79247
[134]
GSM79248
[135]
GSM79249
[136]
GSM79250
[137]
GSM79251
[138]
GSM79252
[139]
GSM79253
[140]
GSM79254
[141]
GSM79255
[142]
GSM79256
[143]
GSM79257
[144]
GSM79258
[145]
GSM79259
[146]
GSM79260
[147]
GSM79261
[148]
GSM79262
[149]
GSM79263
[150]
GSM79264
[151]
GSM79265
[152]
GSM79266
[153]
GSM79267
[154]
GSM79268
[155]
GSM79269
[156]
GSM79270
[157]
GSM79271
[158]
GSM79272
[159]
GSM79273
[160]
GSM79274
[161]
GSM79275
[162]
GSM79276
[163]
GSM79277
[164]
GSM79278
[165]
GSM79279
[166]
GSM79280
[167]
GSM79281
[168]
GSM79282
[169]
GSM79283
[170]
GSM79284
[171]
GSM79285
[172]
GSM79286
[173]
GSM79287
[174]
GSM79288
[175]
GSM79289
[176]
GSM79290
[177]
GSM79291
[178]
GSM79292
[179]
GSM79293
[180]
GSM79294
[181]
GSM79295
[182]
GSM79296
[183]
GSM79297
[184]
GSM79298
[185]
GSM79299
[186]
GSM79300
[187]
GSM79301
[188]
GSM79302
[189]
GSM79303
[190]
GSM79304
[191]
GSM79305
[192]
GSM79306
[193]
GSM79307
[194]
GSM79308
[195]
GSM79309
[196]
GSM79310
[197]
GSM79311
[198]
GSM79312
[199]
GSM79313
[200]
GSM79314
[201]
GSM79315
[202]
GSM79316
[203]
GSM79317
[204]
GSM79318
[205]
GSM79319
[206]
GSM79320
[207]
GSM79321
[208]
GSM79322
[209]
GSM79323
[210]
GSM79324
[211]
GSM79325
[212]
GSM79326
[213]
GSM79327
[214]
GSM79328
[215]
GSM79329
[216]
GSM79330
[217]
GSM79331
[218]
GSM79332
[219]
GSM79333
[220]
GSM79334
[221]
GSM79335
[222]
GSM79336
[223]
GSM79337
[224]
GSM79338
[225]
GSM79339
[226]
GSM79340
[227]
GSM79341
[228]
GSM79342
[229]
GSM79343
[230]
GSM79344
[231]
GSM79345
[232]
GSM79346
[233]
GSM79347
[234]
GSM79348
[235]
GSM79349
[236]
GSM79350
[237]
GSM79351
[238]
GSM79352
[239]
GSM79353
[240]
GSM79354
[241]
GSM79355
[242]
GSM79356
[243]
GSM79357
[244]
GSM79358
[245]
GSM79359
[246]
GSM79360
[247]
GSM79361
[248]
GSM79362
[249]
GSM79363
[250]
GSM79364
[251]
GSM79365
[252]
GSM79366
[253]
GSM79367
[254]
GSM79368
[255]
GSM79369
[256]
GSM79370
[257]
GSM79371
[258]
GSM79372
[259]
GSM79373
[260]
GSM79374
[261]
GSM79375
[262]
GSM79376
[263]
GSM79377
[264]
GSM79378
[265]
GSM79379
[266]
GSM79380
[267]
GSM79381
[268]
GSM79382
[269]
GSM79383
[270]
GSM79384
[271]
GSM79385
[272]
GSM79386
[273]
GSM79387
[274]
GSM79388
[275]
GSM79389
[276]
GSM79390
[277]
GSM79391
[278]
GSM79392
[279]
GSM79393
[280]
GSM79394
[281]
GSM79395
[282]
GSM79396
[283]
GSM79397
[284]
GSM79398
[285]
GSM79399
[286]
GSM79400
[287]
GSM79401
[288]
GSM79402
[289]
GSM79403
[290]
GSM79404
[291]
GSM79405
[292]
GSM79406
[293]
GSM79407
[294]
GSM79408
[295]
GSM79409
[296]
GSM79410
[297]
GSM79411
[298]
GSM79412
[299]
GSM79413
[300]
GSM79414
[301]
GSM79415
[302]
GSM79416
[303]
GSM79417
[304]
GSM79418
[305]
GSM79419
[306]
GSM79420
[307]
GSM79421
[308]
GSM79422
[309]
GSM79423
[310]
GSM79424
[311]
GSM79425
[312]
GSM79426
[313]
GSM79427
[314]
GSM79428
[315]
GSM79429
[316]
GSM79430
[317]
GSM79431
[318]
GSM79432
[319]
GSM79433
[320]
GSM79434
[321]
GSM79435
[322]
GSM79436
[323]
GSM79437
[324]
GSM79438
[325]
GSM79439
[326]
GSM79440
[327]
GSM79441
[328]
GSM79442
[329]
GSM79443
[330]
GSM79444
[331]
GSM79445
[332]
GSM79446
[333]
GSM79447
[334]
GSM79448
[335]
GSM79449
[336]
GSM79450
[337]
GSM79451
[338]
GSM79452
[339]
GSM79453
[340]
GSM79454
[341]
GSM79455
[342]
GSM79456
[343]
GSM79457
[344]
GSM79458
[345]
GSM79459
[346]
GSM79460
[347]
GSM79461
[348]
GSM79462
[349]
GSM79463
[350]
GSM79464
[351]
GSM79465
[352]
GSM79466
[353]
GSM79467
[354]
GSM79468
[355]
GSM79469
[356]
GSM79470
[357]
GSM79471
[358]
GSM79472
[359]
GSM79473
[360]
GSM79474
[361]
GSM79475
[362]
GSM79476
[363]
GSM79477
[364]
GSM79478
[365]
GSM79479
[366]
GSM79480
[367]
GSM79481
[368]
GSM79482
[369]
GSM79483
[370]
GSM79484
[371]
GSM79485
[372]
GSM79486
[373]
GSM79487
[374]
GSM79488
[375]
GSM79489
[376]
GSM79490
[377]
GSM79491
[378]
GSM79492
[379]
GSM79493
[380]
GSM79494
[381]
GSM79495
[382]
GSM79496
[383]
GSM79497
[384]
GSM79498
[385]
GSM79499
[386]
GSM79500
[387]
GSM79501
[388]
GSM79502
[389]
GSM79503
[390]
GSM79504
[391]
GSM79505
[392]
GSM79506
[393]
GSM79507
[394]
GSM79508
[395]
GSM79509
[396]
GSM79510
[397]
GSM79511
[398]
GSM79512
[399]
GSM79513
[400]
GSM79514
[401]
GSM79515
[402]
GSM79516
[403]
GSM79517
[404]
GSM79518
[405]
GSM79519
[406]
GSM79520
[407]
GSM79521
[408]
GSM79522
[409]
GSM79523
[410]
GSM79524
[411]
GSM79525
[412]
GSM79526
[413]
GSM79527
[414]
GSM79528
[415]
GSM79529
[416]
GSM79530
[417]
GSM79531
[418]
GSM79532
[419]
GSM79533
[420]
GSM79534
[421]
GSM79535
[422]
GSM79536
[423]
GSM79537
[424]
GSM79538
[425]
GSM79539
[426]
GSM79540
[427]
GSM79541
[428]
GSM79542
[429]
GSM79543
[430]
GSM79544
[431]
GSM79545
[432]
GSM79546
[433]
GSM79547
[434]
GSM79548
[435]
GSM79549
[436]
GSM79550
[437]
GSM79551
[438]
GSM79552
[439]
GSM79553
[440]
GSM79554
[441]
GSM79555
[442]
GSM79556
[443]
GSM79557
[444]
GSM79558
[445]
GSM79559
[446]
GSM79560
[447]
GSM79561
[448]
GSM79562
[449]
GSM79563
[450]
GSM79564
[451]
GSM79565
[452]
GSM79566
[453]
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[454]
GSM79568
[455]
GSM79569
[456]
GSM79570
[457]
GSM79571
[458]
GSM79572
[459]
GSM79573
[460]
GSM79574
[461]
GSM79575
[462]
GSM79576
[463]
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[464]
GSM79578
[465]
GSM79579
[466]
GSM79580
[467]
GSM79581
[468]
GSM79582
[469]
GSM79583
[470]
GSM79584
[471]
GSM79585
[472]
GSM79586
[473]
GSM79587
[474]
GSM79588
[475]
GSM79589
[476]
GSM79590
[477]
GSM79591
[478]
GSM79592
[479]
GSM79593
[480]
GSM79594
[481]
GSM79595
[482]
GSM79596
[483]
GSM79597
[484]
GSM79598
[485]
GSM79599
[486]
GSM79600
[487]
GSM79601
[488]
GSM79602
[489]
GSM79603
[490]
GSM79604
[491]
GSM79605
[492]
GSM79606
[493]
GSM79607
[494]
GSM79608
[495]
GSM79609
[496]
GSM79610
[497]
GSM79611
[498]
GSM79612
[499]
GSM79613
[500]
GSM79614
[501]
GSM79615
sample_count
502
group_sizes
null
group_sizes_basis
null
platform
97;96
taxon
Homo sapiens
title
An expression signature for p53 in breast cancer predicts mutation status, transcriptional effects, and patient survival
resolution_checked_at
2026-11-01T15:39:54Z
resolution_check
identifier_resolution_only_no_download_no_licence_read
downloaded
false
licence_read
false
gaps array · 10 items
[0]
asset:data:geo:GSE20194 not downloaded
[1]
asset:data:geo:GSE20194 licence not read
[2]
asset:data:geo:GSE20271 not downloaded
[3]
asset:data:geo:GSE20271 licence not read
[4]
asset:data:geo:GSE25006 not downloaded
[5]
asset:data:geo:GSE25006 licence not read
[6]
asset:data:geo:GSE25066 not downloaded
[7]
asset:data:geo:GSE25066 licence not read
[8]
asset:data:geo:GSE3494 not downloaded
[9]
asset:data:geo:GSE3494 licence not read
analysis object · 4 fields
state
partial
methods array · 4 items
[0] object · 10 fields
id
method-1
family
survival_analysis
specific
log_rank_test
label
Survival analysis
dsl_operations array · 1 item
[0]
logrank_test
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
time_to_event_with_censoring
evidence object · 3 fields
score
1
band
verbatim
quote
Survival analysis was conducted by Kaplan–Meier curve with log-rank test.
[1] object · 10 fields
id
method-2
family
group_comparison
specific
wilcoxon
label
Group comparison
dsl_operations array · 0 items
missing_operations array · 1 item
[0]
group_comparison_wilcoxon
expressible
false
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
0.8
band
high
quote
Wilcoxon
[2] object · 10 fields
id
method-3
family
group_comparison
specific
anova
label
Group comparison
dsl_operations array · 4 items
[0]
group_summary
[1]
welch_t
[2]
bootstrap_mean_difference
[3]
group_comparison_anova
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
two_or_more_groups_continuous
evidence object · 3 fields
score
0.8
band
high
quote
ANOVA
[3] object · 10 fields
id
method-4
family
network_analysis
specific
pathway_enrichment
label
Network / pathway analysis
dsl_operations array · 1 item
[0]
pathway_enrich
missing_operations array · 0 items
parameters object · 0 fields
data_shapes array · 1 item
[0]
edge_list
evidence object · 3 fields
score
0.7
band
medium
quote
pathway enrichment
targets array · 0 items
gaps array · 1 item
[0]
method.reader_differs_from_extractor
capability object · 3 fields
state
complete
requirements array · 1 item
[0] object · 6 fields
capability_id
capability:computational_analysis
label
Computational analysis platform
assay_families array · 9 items
[0]
meta_analysis
[1]
machine_learning
[2]
survival_analysis
[3]
statistical_regression
[4]
pca
[5]
molecular_docking
[6]
network_analysis
[7]
differential_expression
[8]
gwas
candidate
Automated Assays Laravel application and simulated adapters
gaps array · 0 items
readiness object · 8 fields
state
complete
tier
R1
blocked_on
nothing:replicable_now
axes object · 3 fields
method object · 5 fields
tier
R1
expressible
true
required_operations array · 1 item
[0]
logrank_test
missing_operations array · 0 items
basis
The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: log_rank_test.
capability object · 4 fields
tier
R1
capability_id
capability:computational_analysis
availability_state
owned
basis
The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here.
data object · 6 fields
tier
R1
reachable
true
accessions array · 5 items
[0]
GSE3494
[1]
GSE20271
[2]
GSE20194
[3]
GSE25066
[4]
GSE25006
resolved_accessions array · 5 items
[0]
GSE3494
[1]
GSE20271
[2]
GSE20194
[3]
GSE25066
[4]
GSE25006
statements array · 1 item
[0]
TCGA provisional database was downloaded through cBioportal (http://www.cbioportal.org/, accessed on 1 December 2020) and GSE3494, GSE20271, GSE20194, and GSE25066 were downloaded through Gene Expression Omnibus (GEO; https://www.ncbi.nlm.nih.gov/geo/, accessed on 1 December 2020).
basis
The paper names GSE3494, GSE20271, GSE20194, GSE25066, GSE25006 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read.
can_run object · 3 fields
dsl_operations array · 1 item
[0]
logrank_test
assets array · 2 items
[0]
source:pmid:38398074
[1]
data:geo:GSE20194
steps array · 1 item
[0]
run_analysis
must_build object · 5 fields
dsl_operations array · 0 items
converters array · 0 items
readers array · 0 items
capabilities array · 0 items
data_gaps array · 1 item
[0]
data:geo:GSE20194
gaps array · 0 items
review object · 5 fields
state
partial
machine_critique object · 5 fields
kind
extraction_review
reader object · 5 fields
model
MiniMax-M3.1-Flash
provider
minimax
provider_family
minimax
read_at
2026-11-01T19:09:59Z
independence
single_reader
evidence_check object · 2 fields
method
verbatim
availability
verbatim
calls
5
usage object · 3 fields
prompt_tokens
10769
completion_tokens
2682
cached_tokens
264
stages array · 1 item
[0] object · 4 fields
id
extraction
state
complete
reader
MiniMax-M3.1-Flash
provider
minimax
gaps array · 3 items
[0]
review.independent_reader
[1]
review.machine_critique
[2]
review.human_critique
execution object · 5 fields
state
absent
status
not_run
mode
null
runs array · 0 items
gaps array · 1 item
[0]
execution.not_run
provenance object · 7 fields
entities array · 3 items
[0] object · 3 fields
id
pmid:38398074
type
paper
label
pmid:38398074
[1] object · 3 fields
id
source:pmid:38398074
type
manuscript
label
PMID 38398074 full text
[2] object · 3 fields
id
data:geo:GSE20194
type
dataset
label
GEO GSE20194
activities array · 3 items
[0] object · 4 fields
id
activity-reading-sci-2026-11-01
type
classification
used array · 3 items
[0] object · 3 fields
id
pmid:38398074
type
paper
label
pmid:38398074
[1] object · 3 fields
id
source:pmid:38398074
type
manuscript
label
PMID 38398074 full text
[2] object · 3 fields
id
data:geo:GSE20194
type
dataset
label
GEO GSE20194
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-38398074
type
extraction
used array · 1 item
[0]
source:pmid:38398074
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE20194
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE20194
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:38398074
parent_hash
sha256:c09f3fc5f134fcfc104400fe18143af135f35220f5391151989ac1e965cba4f9
fork_of
null
gaps array · 15 items
[0]
asset:data:geo:GSE20194 licence not read
[1]
asset:data:geo:GSE20194 not downloaded
[2]
asset:data:geo:GSE20271 licence not read
[3]
asset:data:geo:GSE20271 not downloaded
[4]
asset:data:geo:GSE25006 licence not read
[5]
asset:data:geo:GSE25006 not downloaded
[6]
asset:data:geo:GSE25066 licence not read
[7]
asset:data:geo:GSE25066 not downloaded
[8]
asset:data:geo:GSE3494 licence not read
[9]
asset:data:geo:GSE3494 not downloaded
[10]
execution.not_run
[11]
method.reader_differs_from_extractor
[12]
review.human_critique
[13]
review.independent_reader
[14]
review.machine_critique
assays array · 1 item
[0] object · 11 fields
role
analysis
definition_id
survival_analysis
definition_version
f2132e96ae6c7a4e
required_operations array · 1 item
[0]
logrank_test
support_state
supported
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
Survival analysis was conducted by Kaplan–Meier curve with log-rank test.
order_basis
analysis_only
id
assay:1
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:38398074", "kind": "science-record", "revision": 4, "content_hash": "sha256:a7d462b21a9c40c43c4b4f1e16baf210dd37ad8e1915011f3fa2259b70b1b135", "created_at": "2026-11-01T19:20:20Z", "updated_at": "2026-11-01T22:11:19Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Increased PIEZO1 Expression Is Associated with Worse Clinical Outcomes in Hormone-Receptor-Negative Breast Cancer Patients.", "doi": "10.3390/cancers16040683", "pmid": "38398074", "authors": ["Rylee Ann Poole", "Qingfei Wang", "Alo Ray", "Kazuaki Takabe", "Mateusz Opyrchal", "Eriko Katsuta"], "journal": "Cancers", "year": 2024, "abstract": "PIEZO1 plays a crucial role in the human body as a mechanosensory ion channel. It has been demonstrated that PIEZO1 is important in tissue development and regulating many essential physiological processes. Studies have suggested that the PIEZO1 ion channel plays a role in invasion and progression in cancer; elevated levels of PIEZO1 have been correlated with increased migration in breast cancer cells, chemo-resistance and invasion in gastric cancer cells, and increased invasion of osteosarcoma cells. In addition, high PIEZO1 expression levels were correlated with a worse prognosis in glioma patients. On the other hand, studies in lung cancer have attributed high PIEZO1 levels to better patient outcomes. However, the clinical impact of PIEZO1 in breast cancer is not well characterized. Therefore, our goal was to determine the clinical relevance of PIEZO1 in breast cancer. An analysis of breast cancer data from The Cancer Genome Atlas (TCGA) was conducted to investigate PIEZO1 expression levels and correlation to survival, followed by validation in an independent dataset, GSE3494. We also performed gene set enrichment analysis (GSEA) and pathway enrichment analysis. We also analyzed the immune cell composition in breast tumors from TCGA through a CIBERSORT algorithm. Our results demonstrated that the PIEZO1 expression levels are higher in hormone-receptor (HR)-negative than in HR-positive cohorts. High PIEZO1 expression is correlated with a significant decrease in survival in HR-negative cohorts, especially in triple-negative breast cancer (TNBC), suggesting that PIEZO1 could be utilized as a prognostic biomarker in HR-negative breast cancer. GSEA showed that various signaling pathways associated with more invasive phenotypes and resistance to treatments, including epithelial-mesenchymal transition (EMT), hypoxia, and multiple signaling pathways, are enriched in high-PIEZO1 HR-negative tumors. Our results also demonstrated a decrease in CD8+ and CD4+ T cell infiltration in high-PIEZO1 HR-negative tumors. Further investigations are necessary to elucidate the mechanistic roles of PIEZO1 in HR-negative breast cancer.", "claims": [{"id": "claim-method", "statement": "Survival analysis was conducted by Kaplan–Meier curve with log-rank test.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:38398074", "locator": "sections[7] \"2.5. 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"differential_expression", "gwas"], "availability_state": "owned", "tier_unlocked": "R1", "candidate": "Automated Assays Laravel application and simulated adapters"}], "gaps": []}, "readiness": {"state": "complete", "tier": "R1", "blocking_axis": "none", "blocked_on": "nothing:replicable_now", "axes": {"method": {"tier": "R1", "expressible": true, "required_operations": ["logrank_test"], "missing_operations": [], "basis": "The paper names the method it used and the corpus's method extractor maps it onto the DSL catalogue: log_rank_test."}, "capability": {"tier": "R1", "capability_id": "capability:computational_analysis", "availability_state": "owned", "basis": "The computational analysis is owned. The physical bench the paper used is not, so a physical validation cannot be run here."}, "data": {"tier": "R1", "reachable": true, "accessions": ["GSE3494", "GSE20271", "GSE20194", "GSE25066", "GSE25006"], "resolved_accessions": ["GSE3494", "GSE20271", "GSE20194", "GSE25066", "GSE25006"], "statements": ["TCGA provisional database was downloaded through cBioportal (http://www.cbioportal.org/, accessed on 1 December 2020) and GSE3494, GSE20271, GSE20194, and GSE25066 were downloaded through Gene Expression Omnibus (GEO; https://www.ncbi.nlm.nih.gov/geo/, accessed on 1 December 2020)."], "basis": "The paper names GSE3494, GSE20271, GSE20194, GSE25066, GSE25006 in Gene Expression Omnibus (GEO) and the accession resolves in the repository. No dataset was downloaded and no licence was read."}}, "can_run": {"dsl_operations": ["logrank_test"], "assets": ["source:pmid:38398074", "data:geo:GSE20194"], "steps": ["run_analysis"]}, "must_build": {"dsl_operations": [], "converters": [], "readers": [], "capabilities": [], "data_gaps": ["data:geo:GSE20194"]}, "gaps": []}, "review": {"state": "partial", "machine_critique": {"kind": "extraction_review", "reader": {"model": "MiniMax-M3.1-Flash", "provider": "minimax", "provider_family": "minimax", "read_at": "2026-11-01T19:09:59Z", "independence": "single_reader"}, "evidence_check": {"method": "verbatim", "availability": "verbatim"}, "calls": 5, "usage": {"prompt_tokens": 10769, "completion_tokens": 2682, "cached_tokens": 264}}, "human_critique": null, "stages": [{"id": "extraction", "state": "complete", "reader": "MiniMax-M3.1-Flash", "provider": "minimax"}], "gaps": ["review.independent_reader", "review.machine_critique", "review.human_critique"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "pmid:38398074", "type": "paper", "label": "pmid:38398074"}, {"id": "source:pmid:38398074", "type": "manuscript", "label": "PMID 38398074 full text"}, {"id": "data:geo:GSE20194", "type": "dataset", "label": "GEO GSE20194"}], "activities": [{"id": "activity-reading-sci-2026-11-01", "type": "classification", "used": [{"id": "pmid:38398074", "type": "paper", "label": "pmid:38398074"}, {"id": "source:pmid:38398074", "type": "manuscript", "label": "PMID 38398074 full text"}, {"id": "data:geo:GSE20194", "type": "dataset", "label": "GEO GSE20194"}], "agent": "agent:corpus-assay-engine"}, {"id": "activity-read-38398074", "type": "extraction", "used": ["source:pmid:38398074"], "agent": "agent:minimax-reader"}, {"id": "activity-resolve-GSE20194", "type": "accession_resolution", "used": ["data:geo:GSE20194"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}, {"id": "agent:minimax-reader", "type": "software", "label": "MiniMax literature reader"}], "source_run_id": "reading-sci-2026-11-01", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "pmid:38398074", "parent_hash": "sha256:c09f3fc5f134fcfc104400fe18143af135f35220f5391151989ac1e965cba4f9", "fork_of": null, "generation": 3}, "gaps": ["asset:data:geo:GSE20194 licence not read", "asset:data:geo:GSE20194 not downloaded", "asset:data:geo:GSE20271 licence not read", "asset:data:geo:GSE20271 not downloaded", "asset:data:geo:GSE25006 licence not read", "asset:data:geo:GSE25006 not downloaded", "asset:data:geo:GSE25066 licence not read", "asset:data:geo:GSE25066 not downloaded", "asset:data:geo:GSE3494 licence not read", "asset:data:geo:GSE3494 not downloaded", "execution.not_run", "method.reader_differs_from_extractor", "review.human_critique", "review.independent_reader", "review.machine_critique"], "assays": [{"role": "analysis", "definition_id": "survival_analysis", "definition_version": "f2132e96ae6c7a4e", "definition_digest": null, "required_operations": ["logrank_test"], "support_state": "supported", "source_hashes": {"dsl_catalogue": "f2132e96ae6c7a4e"}, "confidence": 1.0, "evidence": ["Survival analysis was conducted by Kaplan–Meier curve with log-rank test."], "order_basis": "analysis_only", "id": "assay:1"}]}