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pmid:39107483

Identification of ENTPD1 as a novel biomarker linking allergic rhinitis and systemic lupus erythematosus.

Min Chen · Yingdi Meng · Xiaoqiong Shi · Chengjing Zhu · Minhui Zhu · Haihong Tang · Hongliang Zheng

Scientific reports · 2024 doi:10.1038/s41598-024-69228-3

Paper

complete

Experiment

complete

Data

partial

Analysis

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Execution

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Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
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pmid:39107483
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science-record
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paper object · 10 fields
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title
Identification of ENTPD1 as a novel biomarker linking allergic rhinitis and systemic lupus erythematosus.
doi
10.1038/s41598-024-69228-3
pmid
39107483
authors array · 7 items
[0]
Min Chen
[1]
Yingdi Meng
[2]
Xiaoqiong Shi
[3]
Chengjing Zhu
[4]
Minhui Zhu
[5]
Haihong Tang
[6]
Hongliang Zheng
journal
Scientific reports
year
2024
abstract
Several studies reveal that allergic rhinitis (AR) is a significant risk factor of systemic lupus erythematosus (SLE). However, studies investigating the common pathogenesis linking AR and SLE are lacking. Our study aims to search for the shared biomarkers and mechanisms that may provide new therapeutic targets for preventing AR from developing SLE. GSE50223 for AR and GSE103760 for SLE were downloaded from the Gene Expression Omnibus (GEO) database to screen differentially expressed genes (DEGs). The Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were performed to explore the functions of shared DEGs. Hub genes were screened by cytoHubba (a plugin of Cytoscape) and validated in another two datasets. Gene set enrichment analysis (GSEA) and single-sample Gene set enrichment analysis (ssGSEA) algorithm were applied to understand the functions of hub gene. ENTPD1 was validated as a hub gene between AR and SLE. GSEA results revealed that ENTPD1 was associated with KRAS_SIGNALING_UP pathway in AR and related to HYPOXIA, TGF_BETA_SIGNALING and TNFA_SIGNALING_VIA_NFKB pathways in SLE. The expression of ENTPD1 was positively correlated with activated CD8 T cell in both diseases. Thus, ENTPD1 may be a novel therapeutic target for preventing AR from developing SLE.
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Finally, the limma R package were utilized to search for the differentially expressed genes (DEGs) in GSE50223 and GSE103760.
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sections[4] "Identification of shared DEGs between AR and SLE" paragraph 2
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Finally, the limma R package were utilized to search for the differentially expressed genes (DEGs) in GSE50223 and GSE103760.
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Upstream regulators of human T cell-associated diseases (dataset 4)
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GEO GSE10325
agent
agent:corpus-assay-engine
[1] object · 4 fields
id
activity-read-39107483
type
extraction
used array · 1 item
[0]
source:pmid:39107483
agent
agent:minimax-reader
[2] object · 4 fields
id
activity-resolve-GSE10325
type
accession_resolution
used array · 1 item
[0]
data:geo:GSE10325
agent
agent:corpus-assay-engine
agents array · 2 items
[0] object · 3 fields
id
agent:corpus-assay-engine
type
software
label
Corpus assay engine
[1] object · 3 fields
id
agent:minimax-reader
type
software
label
MiniMax literature reader
source_run_id
reading-sci-2026-11-01
dsl_catalogue_fingerprint
343fb30756ba6ec3
capability_table_fingerprint
2cb3e42f047d2ecf
snapshot_id
ba34b49490d9bfaf
lineage object · 4 fields
parent_id
pmid:39107483
parent_hash
sha256:c0bd226aa867f8c0c8f4a8f7be88e5cdacffc173a56a3585914e1049b0211095
fork_of
null
gaps array · 12 items
[0]
asset:data:geo:GSE10325 licence not read
[1]
asset:data:geo:GSE10325 not downloaded
[2]
asset:data:geo:GSE103760 licence not read
[3]
asset:data:geo:GSE103760 not downloaded
[4]
asset:data:geo:GSE44960 licence not read
[5]
asset:data:geo:GSE44960 not downloaded
[6]
asset:data:geo:GSE50223 licence not read
[7]
asset:data:geo:GSE50223 not downloaded
[8]
execution.not_run
[9]
review.human_critique
[10]
review.independent_reader
[11]
review.machine_critique
assays array · 1 item
[0] object · 11 fields
role
analysis
definition_id
differential_expression
definition_version
f2132e96ae6c7a4e
required_operations array · 3 items
[0]
normalise_counts
[1]
differential_expression_fit
[2]
fdr_bh
support_state
supported
source_hashes object · 1 field
dsl_catalogue
f2132e96ae6c7a4e
evidence array · 1 item
[0]
Finally, the limma R package were utilized to search for the differentially expressed genes (DEGs) in GSE50223 and GSE103760.
order_basis
analysis_only
id
assay:1
Complete file
{"sci_version": "1.2", "schema": "https://corpus.bntrg.co.uk/sci/1.0/sci.schema.json", "id": "pmid:39107483", "kind": "science-record", "revision": 4, "content_hash": "sha256:f61f48c900a4361dd54a238afe6b4a112f7ebe2812e8b7f2234c044540e0691a", "created_at": "2026-11-01T20:29:11Z", "updated_at": "2026-11-01T22:54:51Z", "generator": {"name": "corpus-assay-engine", "run_id": "reading-sci-2026-11-01"}, "paper": {"state": "complete", "title": "Identification of ENTPD1 as a novel biomarker linking allergic rhinitis and systemic lupus erythematosus.", "doi": "10.1038/s41598-024-69228-3", "pmid": "39107483", "authors": ["Min Chen", "Yingdi Meng", "Xiaoqiong Shi", "Chengjing Zhu", "Minhui Zhu", "Haihong Tang", "Hongliang Zheng"], "journal": "Scientific reports", "year": 2024, "abstract": "Several studies reveal that allergic rhinitis (AR) is a significant risk factor of systemic lupus erythematosus (SLE). However, studies investigating the common pathogenesis linking AR and SLE are lacking. Our study aims to search for the shared biomarkers and mechanisms that may provide new therapeutic targets for preventing AR from developing SLE. GSE50223 for AR and GSE103760 for SLE were downloaded from the Gene Expression Omnibus (GEO) database to screen differentially expressed genes (DEGs). The Gene Ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were performed to explore the functions of shared DEGs. Hub genes were screened by cytoHubba (a plugin of Cytoscape) and validated in another two datasets. Gene set enrichment analysis (GSEA) and single-sample Gene set enrichment analysis (ssGSEA) algorithm were applied to understand the functions of hub gene. ENTPD1 was validated as a hub gene between AR and SLE. GSEA results revealed that ENTPD1 was associated with KRAS_SIGNALING_UP pathway in AR and related to HYPOXIA, TGF_BETA_SIGNALING and TNFA_SIGNALING_VIA_NFKB pathways in SLE. The expression of ENTPD1 was positively correlated with activated CD8 T cell in both diseases. 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This lane did not download the dataset or read its licence.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE10325"], "outputs": ["the source data with its repository provenance"], "instruments": [], "reagents": []}, {"id": "run_analysis", "order": 3, "name": "Run the published analysis", "kind": "analysis", "state": "complete", "blocked_on": null, "description": "Apply the paper's statistical method to the resolved series and compare the result with the published target.", "duration_hours": null, "parameters": {}, "inputs": ["data:geo:GSE10325"], "outputs": ["the replicated result and its comparison"], "instruments": [], "reagents": []}], "materials": [], "instruments": [], "reagents": [], "conditions": {}, "gaps": []}, "data": {"state": "partial", "assets": [{"id": "source:pmid:39107483", "role": "manuscript", "format": "xml", "media_type": "application/xml", "uri": "https://doi.org/10.1038/s41598-024-69228-3", "sha256": 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