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pmid:39114307
Identification and validation of metastasis-related gene ZG16 in the prognosis and progression in colorectal cancer.
Yulun Liu · Jie Yang · Wei Han · Tingting Gu · Liqian Yao · Yongqiang Wang · Hua Chen
Frontiers in oncology · 2024 doi:10.3389/fonc.2024.1409329
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Complete file
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Identification of new metastasis-related genes are critical to improve colorectal cancer prognosis.\nMethods: Data on mRNA expression in metastatic and primary CRC was obtained from the Gene Expression Omnibus (GEO) database, including GSE81986, GSE41568, GSE71222, GSE21510, and GSE14333. Additionally, data concerning mRNA expression in colon cancer (COAD) and adjacent normal tissues were acquired from The Cancer Genome Atlas (TCGA) database. Hub genes were identified by weighted gene co-expression network analysis (WGCNA) and differential gene expression analysis. Moreover, we assessed the impact of hub gene expression on both overall survival (OS) and disease-free survival (DFS) in patients and identified ZG16 as a potential target. We generated CRC cell lines transfected with lentivirus OE-ZG16 to investigate proliferation, invasion, and migration in vitro. To further elucidate the involvement of ZG16, we utilized gene set enrichment analysis (GSEA) to identify enriched pathways, which were subsequently validated via Western blot analysis.\nResults: Five datasets containing primary and metastatic CRC samples from GEO database and CRC samples from TCGA database were included in this study and 29 hub genes were identified by WGCNA and differentially expressed gene (DEG) analysis. Low expression of the hub genes (CLCA1 and ZG16) was associated with poor DFS and OS. We confirmed the low expression of ZG16 in CRC using external database and IHC analysis at both transcriptional and protein levels. In addition, the expression of ZG16 was notably elevated in NCM460 cells in comparison to CRC cell lines. The overexpression of ZG16 in CRC cells has been shown to inhibit the proliferation, invasion, and migration of CRC cells. Furthermore, the overexpression of ZG16 has been found to suppress the activation of the epithelial-mesenchymal transition (EMT) and Wnt/β-catenin signaling pathways in CRC.\nConclusion: ZG16 may serve as a promising therapeutic target for metastatic CRC treatment.", "claims": [{"id": "claim-method", "statement": "The R package limma was applied to analyze the differentially expressed genes (DEGs) in normal and tumor tissues from the TCGA database, as well as patients with various statuses (primary or metastatic) from the GEO database.", "kind": "methodological", "target": null, "evidence": [{"asset": "source:pmid:39114307", "locator": "sections[5] \"Differentially expressed gene analysis\" paragraph 2", "quote": "The R package limma was applied to analyze the differentially expressed genes (DEGs) in normal and tumor tissues from the TCGA database, as well as patients with various statuses (primary or metastatic) from the GEO database."}], "state": "complete"}, {"id": "claim-data-access", "statement": "The datasets presented in this study can be found in online repositories. 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