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pmid:40093675
Circular RNA contributes to gastric cancer by targeting Wnt family member 2B as a competing endogenous RNA.
World journal of gastroenterology · 2025 doi:10.3748/wjg.v31.i10.99583
Paper
partial
Experiment
partial
Data
partial
Analysis
absent
Execution
absent
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Record details sci_version · id · kind · revision · content_hash · schema · created_at · updated_at · generator
generator object · 3 fields
paper object · 10 fields
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parameters object · 0 fields
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reagents array · 0 items
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outputs array · 1 item
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materials array · 0 items
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gaps array · 3 items
data object · 3 fields
assets array · 1 item
[0] object · 15 fields
structure object · 1 field
gaps array · 1 item
capability object · 3 fields
readiness object · 8 fields
axes object · 0 fields
can_run object · 3 fields
dsl_operations array · 0 items
assets array · 1 item
steps array · 1 item
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data_gaps array · 1 item
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gaps array · 2 items
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lineage object · 4 fields
gaps array · 13 items
Complete file
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[{"provider": "minimax", "model": "MiniMax-M3.1-Flash", "prompt_version": "replication-target-v2", "prompt_hash": "bb06b788db1d79ad3cbf166912189e36f13def405ea5b23e244b27e2d89a093a", "source_hash": "198f5ce496798b0a41af4bc6479e0aa8b4475940e3cd910ae87936b7c3b3a104", "raw_response": "{\"parent_value\":0,\"unit\":\"\",\"evidence\":\"\",\"target_result\":\"The paper states the main finding qualitatively: hsa_circRNA_102415 exacerbates gastric cancer cell malignant behavior by upregulating WNT2B expression as a competing endogenous RNA of miR-4529-5p; no numerical result for this main finding is stated.\",\"number_stated\":false}", "reading": {"parent_value": 0, "unit": "", "evidence": "", "target_result": "The paper states the main finding qualitatively: hsa_circRNA_102415 exacerbates gastric cancer cell malignant behavior by upregulating WNT2B expression as a competing endogenous RNA of miR-4529-5p; no numerical result for this main finding is stated.", "number_stated": false, "source_locator": null}, "recorded_at": "2026-10-31T15:34:24.648712+00:00"}, {"provider": "minimax_alt", "model": "MiniMax-M3", "prompt_version": "replication-target-v2", "prompt_hash": "ca0add41f2aeed39022836b5c09384359e358a1cb3643007fac795f18b510d97", "source_hash": "198f5ce496798b0a41af4bc6479e0aa8b4475940e3cd910ae87936b7c3b3a104", "raw_response": "<think>We need answer JSON only. Need identify single numerical result headline main finding. Source text perhaps sample size 75 tumor specimens and matched normal samples. But \"headline numerical result paper states for main finding\" likely numerical target absent. We need infer task patterns. Registered target generic \"the headline numerical result the paper states for its main finding\". Source contains numbers mostly IDs, dates, methods parameters, sample count, significance P<0.05. Main findings qualitative; no quantitative headline result. Thus number_stated false, parent 0, unit/evidence empty, target_result say no numerical result stated for main finding; paper states qualitative conclusion. Need ensure exact quote? If false evidence empty. target_result can state what text does state instead. Perhaps quote exact conclusion: \"This study revealed that hsa_circRNA_102415 exacerbated GC cell malignant behavior as a ceRNA of miR-4529-5p by upregulating WNT2B expression.\" That contains no number. They request if no number, say in target_result what text does state instead. We can use that exact wording. JSON valid. No markdown.</think>\n\n{\"parent_value\":0,\"unit\":\"\",\"evidence\":\"\",\"target_result\":\"This study revealed that hsa_circRNA_102415 exacerbated GC cell malignant behavior as a ceRNA of miR-4529-5p by upregulating WNT2B expression.\",\"number_stated\":false}", "reading": {"parent_value": 0, "unit": "", "evidence": "", "target_result": "This study revealed that hsa_circRNA_102415 exacerbated GC cell malignant behavior as a ceRNA of miR-4529-5p by upregulating WNT2B expression.", "number_stated": false, "source_locator": null}, "recorded_at": "2026-10-31T15:34:25.301743+00:00"}], "agreement": true, "disagreements": {"target_result": {"minimax": "unclear; the paper states that hsa_circRNA_102415 had significantly higher expression levels in disease tissues, but provides no headline numerical value for this result", "minimax_alt": "unclear — the supplied text states no numerical headline result; the main qualitative result is that hsa_circRNA_102415 upregulated WNT2B expression in GC cells as a competing endogenous RNA for miR-4529-5p and exacerbated GC cell malignant behavior.", "decisive": false}, "physical_methods": {"minimax": ["Quantitative real-time polymerase chain reaction", "Transwell assay", "cell counting kit 8", "argonaute 2-RNA immunoprecipitation", "luciferase reporter gene analysis", "Western blot analysis", "rescue experiments"], "minimax_alt": ["Collection of 75 tumor specimens and matched normal samples from Shanxi Province Cancer Hospital", "Quantitative real-time polymerase chain reaction for detecting differentially expressed genes in GC tissue and adjacent cancer tissue samples", "Transwell invasion assay", "Cell counting kit 8 proliferation assay", "Transfection of GC cells with small interfering RNA and plasmid DNA", "Western blot analysis of WNT2B and β-actin", "Argonaute 2-RNA immunoprecipitation", "Luciferase reporter gene assay", "Rescue experiments using miR-4529-5p mimic or inhibitor and small interfering-WNT2B"], "decisive": false}, "analysis_methods": {"minimax": ["GEO2R analysis", "computer-aided algorithms for circRNA and miR target prediction"], "minimax_alt": ["GEO2R analysis of GSE83521 to identify circRNA differences between normal and GC samples", "Computer-aided target-prediction algorithms for circRNA and miR", "Image J software for western blot band-density analysis", "T-test for comparison of two data sets", "Analysis of variance for comparison between groups"], "decisive": false}}, "agreement_basis": {"policy": "decisive_fields", "decisive_fields": ["work_type", "number_stated", "parent_value", "unit"]}, "blinded": true}, "human_critique": {"status": "not_run", "reviewer": null, "signed_at": null, "conflict_checked": false, "commentary": null}, "stages": [{"key": "target_materials", "status": "pending", "reason": null, "evidence": null}, {"key": "independent_readings", "status": "passed", "reason": "The independent readings are incomplete or disagree; the source evidence must resolve the difference.", "evidence": {"provider_errors": []}}, {"key": "source_resolution", "status": "pending", "reason": null, "evidence": null}, {"key": "protocol_reconstruction", "status": "pending", "reason": null, "evidence": null}, {"key": "control_execution", "status": "pending", "reason": null, "evidence": null}, {"key": "control_comparison", "status": "pending", "reason": null, "evidence": null}, {"key": "publication", "status": "pending", "reason": null, "evidence": null}], "gaps": ["review.human_critique", "review.machine_critique.passed"]}, "execution": {"state": "absent", "status": "not_run", "mode": null, "runs": [], "gaps": ["execution.not_run"]}, "provenance": {"entities": [{"id": "package:987929a36fe4d2e75e41183b6a76b342c2554ef4431950e413ef1af0e03f3161", "type": "sep_package", "label": "SEP v1 package for pmid:40093675"}], "activities": [{"id": "activity:conversion:pmid:40093675", "type": "conversion", "used": ["package:987929a36fe4d2e75e41183b6a76b342c2554ef4431950e413ef1af0e03f3161"], "agent": "agent:corpus-assay-engine"}], "agents": [{"id": "agent:minimax", "type": "model", "label": "minimax"}, {"id": "agent:minimax_alt", "type": "model", "label": "minimax_alt"}, {"id": "agent:corpus-assay-engine", "type": "software", "label": "Corpus assay engine"}], "source_run_id": "run-20261023T122449232913", "dsl_catalogue_fingerprint": "343fb30756ba6ec3", "capability_table_fingerprint": "2cb3e42f047d2ecf", "snapshot_id": "ba34b49490d9bfaf"}, "lineage": {"parent_id": "4d897033-62c8-461b-b797-48ab7cf14262", "parent_hash": "987929a36fe4d2e75e41183b6a76b342c2554ef4431950e413ef1af0e03f3161", "fork_of": null, "generation": 1}, "gaps": ["abstract", "asset:source:pmid:40093675 not verified", "authors", "capability", "corpus_record_absent", "execution.not_run", "method", "review.human_critique", "review.machine_critique.passed", "step:obtain_source_data blocked on data:not_downloaded", "step:run_analysis blocked on no owned computational capability is bound to this experiment", "step:run_analysis input 'materials:the source data behind the published result in pmid:40093675' does not resolve to a declared asset", "targets"]}